data_1UNM # _entry.id 1UNM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1UNM pdb_00001unm 10.2210/pdb1unm/pdb PDBE EBI-13488 ? ? WWPDB D_1290013488 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1A7Z unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN Z3' PDB 209D unspecified 'CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2' PDB 1I3W unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2' PDB 1A7Y unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D' PDB 1FJA unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2' PDB 173D unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 2D55 unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSC unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1L1V unspecified 'SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)' PDB 316D unspecified 'CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSD unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2' PDB 1MNV unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2' PDB 1UNJ unspecified 'CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2' PDB 1OVF unspecified 'SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2' PDB 1QFI unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN X2' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UNM _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-09-11 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Alexopoulos, E.C.' 1 'Klement, R.' 2 'Jares-Erijman, E.A.' 3 'Uson, I.' 4 'Jovin, T.M.' 5 'Sheldrick, G.M.' 6 # _citation.id primary _citation.title 'Crystal and Solution Structures of 7-Amino-Actinomycin D Complexes with D(Ttagbrut), D(Ttagtt) and D(Tttagttt)' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 61 _citation.page_first 407 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15805595 _citation.pdbx_database_id_DOI 10.1107/S090744490500082X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Alexopoulos, E.C.' 1 ? primary 'Jares-Erijman, E.A.' 2 ? primary 'Jovin, T.M.' 3 ? primary 'Klement, R.' 4 ? primary 'Machinek, R.' 5 ? primary 'Sheldrick, G.M.' 6 ? primary 'Uson, I.' 7 ? # _cell.entry_id 1UNM _cell.length_a 51.586 _cell.length_b 70.975 _cell.length_c 39.453 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UNM _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*TP*AP*GP*BRU*TP)-3'" 1879.096 4 ? ? ? ? 2 polymer syn '7-AMINOACTINOMYCIN D' 1274.462 2 ? ? ? ? 3 water nat water 18.015 13 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DT)(DT)(DA)(DG)(BRU)(DT)' TTAGUT A,B,C,D ? 2 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PX1)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV E,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DA n 1 4 DG n 1 5 BRU n 1 6 DT n 2 1 THR n 2 2 DVA n 2 3 PRO n 2 4 SAR n 2 5 MVA n 2 6 PX1 n 2 7 THR n 2 8 DVA n 2 9 PRO n 2 10 SAR n 2 11 MVA n # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'STREPTOMYCES ANTIBIOTICUS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1890 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1UNM 1 ? ? 1UNM ? 2 NOR NOR00228 2 ? ? NOR00228 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1UNM A 1 ? 6 ? 1UNM 1 ? 6 ? 1 6 2 1 1UNM B 1 ? 6 ? 1UNM 1 ? 6 ? 1 6 3 1 1UNM C 1 ? 6 ? 1UNM 1 ? 6 ? 1 6 4 1 1UNM D 1 ? 6 ? 1UNM 1 ? 6 ? 1 6 5 2 1UNM E 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 6 2 1UNM F 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 5 1UNM PX1 E 6 ? NOR NOR00228 PXZ 6 chromophore 6 1 6 1UNM PX1 F 6 ? NOR NOR00228 PXZ 6 chromophore 6 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 HOH non-polymer . WATER ? 'H2 O' 18.015 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PX1 non-polymer . '(1Z)-7-AMINO-1-(HYDROXYMETHYLENE)-2-IMINO-4,6-DIMETHYL-3-OXO-2,3-DIHYDRO-1H-PHENOXAZINE-9-CARBALDEHYDE' ? 'C16 H13 N3 O4' 311.292 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O4' 296.277 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # _exptl.entry_id 1UNM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.density_percent_sol 45 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.60 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '(NH4)2SO4, NAK TART, NA CIT, PH 5.6, HANGING DROP' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-06-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.5418 1.0 2 0.8110 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418,0.8110 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1UNM _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.000 _reflns.number_obs 10296 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.03200 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.8700 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.830 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.10 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs 0.08960 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.710 _reflns_shell.pdbx_redundancy 1.86 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1UNM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 4870 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.6 _refine.ls_R_factor_obs 0.2431 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.2809 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 257 _refine.ls_number_parameters 2356 _refine.ls_number_restraints 2493 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'IN THIN SHELLS' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1UNM _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0 _refine_analyze.occupancy_sum_non_hydrogen 583.29 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 182 _refine_hist.pdbx_number_atoms_nucleic_acid 390 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 585 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.205 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.082 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1UNM _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.2431 _pdbx_refine.free_R_factor_no_cutoff 0.2809 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 257 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.2370 _pdbx_refine.free_R_factor_4sig_cutoff 0.2744 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.4 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 245 _pdbx_refine.number_reflns_obs_4sig_cutoff 4558 # _struct.entry_id 1UNM _struct.title 'Crystal structure of 7-Aminoactinomycin D with non-complementary DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UNM _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC _struct_keywords.text ;ACTINOMYCIN D, ACTINOMYCIN, ANTIBIOTIC, ANTI CANCER, CHROMOPHORE, DEPSIPEPTIDE, FLUORESCENT AGENT, ANTI TUMOR, NON-COMPLEMENTARY DNA, HOOGSTEN BASE-PAIR, DNA-ANTIBIOTIC COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A BRU 5 P ? ? A DG 4 A BRU 5 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale2 covale both ? A BRU 5 "O3'" ? ? ? 1_555 A DT 6 P ? ? A BRU 5 A DT 6 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale3 covale both ? B DG 4 "O3'" ? ? ? 1_555 B BRU 5 P ? ? B DG 4 B BRU 5 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale4 covale both ? B BRU 5 "O3'" ? ? ? 1_555 B DT 6 P ? ? B BRU 5 B DT 6 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale5 covale both ? C DG 4 "O3'" ? ? ? 1_555 C BRU 5 P ? ? C DG 4 C BRU 5 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale6 covale both ? C BRU 5 "O3'" ? ? ? 1_555 C DT 6 P ? ? C BRU 5 C DT 6 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale7 covale both ? D DG 4 "O3'" ? ? ? 1_555 D BRU 5 P ? ? D DG 4 D BRU 5 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale8 covale both ? D BRU 5 "O3'" ? ? ? 1_555 D DT 6 P ? ? D BRU 5 D DT 6 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale9 covale both ? E THR 1 C ? ? ? 1_555 E DVA 2 N ? ? E THR 1 E DVA 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale10 covale one ? E THR 1 OG1 ? ? ? 1_555 E MVA 5 C ? ? E THR 1 E MVA 5 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale11 covale one ? E THR 1 N ? ? ? 1_555 E PX1 6 C0 ? ? E THR 1 E PX1 6 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale12 covale both ? E DVA 2 C ? ? ? 1_555 E PRO 3 N ? ? E DVA 2 E PRO 3 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale13 covale both ? E PRO 3 C ? ? ? 1_555 E SAR 4 N ? ? E PRO 3 E SAR 4 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale14 covale both ? E SAR 4 C ? ? ? 1_555 E MVA 5 N ? ? E SAR 4 E MVA 5 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale15 covale one ? E PX1 6 "C0'" ? ? ? 1_555 E THR 7 N ? ? E PX1 6 E THR 7 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale16 covale both ? E THR 7 C ? ? ? 1_555 E DVA 8 N ? ? E THR 7 E DVA 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale17 covale one ? E THR 7 OG1 ? ? ? 1_555 E MVA 11 C ? ? E THR 7 E MVA 11 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale18 covale both ? E DVA 8 C ? ? ? 1_555 E PRO 9 N ? ? E DVA 8 E PRO 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale19 covale both ? E PRO 9 C ? ? ? 1_555 E SAR 10 N ? ? E PRO 9 E SAR 10 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale20 covale both ? E SAR 10 C ? ? ? 1_555 E MVA 11 N ? ? E SAR 10 E MVA 11 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale21 covale both ? F THR 1 C ? ? ? 1_555 F DVA 2 N ? ? F THR 1 F DVA 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale22 covale one ? F THR 1 OG1 ? ? ? 1_555 F MVA 5 C ? ? F THR 1 F MVA 5 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale23 covale one ? F THR 1 N ? ? ? 1_555 F PX1 6 C0 ? ? F THR 1 F PX1 6 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale24 covale both ? F DVA 2 C ? ? ? 1_555 F PRO 3 N ? ? F DVA 2 F PRO 3 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale25 covale both ? F PRO 3 C ? ? ? 1_555 F SAR 4 N ? ? F PRO 3 F SAR 4 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale26 covale both ? F SAR 4 C ? ? ? 1_555 F MVA 5 N ? ? F SAR 4 F MVA 5 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale27 covale one ? F PX1 6 "C0'" ? ? ? 1_555 F THR 7 N ? ? F PX1 6 F THR 7 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale28 covale both ? F THR 7 C ? ? ? 1_555 F DVA 8 N ? ? F THR 7 F DVA 8 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale29 covale one ? F THR 7 OG1 ? ? ? 1_555 F MVA 11 C ? ? F THR 7 F MVA 11 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale30 covale both ? F DVA 8 C ? ? ? 1_555 F PRO 9 N ? ? F DVA 8 F PRO 9 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale31 covale both ? F PRO 9 C ? ? ? 1_555 F SAR 10 N ? ? F PRO 9 F SAR 10 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale32 covale both ? F SAR 10 C ? ? ? 1_555 F MVA 11 N ? ? F SAR 10 F MVA 11 1_555 ? ? ? ? ? ? ? 1.331 ? ? hydrog1 hydrog ? ? A BRU 5 N3 ? ? ? 1_555 C DG 4 O6 ? ? A BRU 5 C DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A BRU 5 O2 ? ? ? 1_555 C DG 4 N1 ? ? A BRU 5 C DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A DT 6 N3 ? ? ? 1_555 C DA 3 N1 ? ? A DT 6 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 6 O4 ? ? ? 1_555 C DA 3 N6 ? ? A DT 6 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 3 N1 ? ? ? 1_555 D DT 6 N3 ? ? B DA 3 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 3 N6 ? ? ? 1_555 D DT 6 O4 ? ? B DA 3 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 4 N1 ? ? ? 1_555 D BRU 5 O2 ? ? B DG 4 D BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? B DG 4 O6 ? ? ? 1_555 D BRU 5 N3 ? ? B DG 4 D BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? B BRU 5 N3 ? ? ? 1_555 D DG 4 O6 ? ? B BRU 5 D DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? B BRU 5 O2 ? ? ? 1_555 D DG 4 N1 ? ? B BRU 5 D DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 E . ? DVA 2 E PRO 3 E ? PRO 3 E 1 8.82 2 PRO 3 E . ? PRO 3 E SAR 4 E ? SAR 4 E 1 -5.13 3 DVA 8 E . ? DVA 8 E PRO 9 E ? PRO 9 E 1 13.64 4 PRO 9 E . ? PRO 9 E SAR 10 E ? SAR 10 E 1 -14.36 5 DVA 2 F . ? DVA 2 F PRO 3 F ? PRO 3 F 1 8.95 6 PRO 3 F . ? PRO 3 F SAR 4 F ? SAR 4 F 1 -3.92 7 DVA 8 F . ? DVA 8 F PRO 9 F ? PRO 9 F 1 9.32 8 PRO 9 F . ? PRO 9 F SAR 10 F ? SAR 10 F 1 -4.92 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR CHAIN E OF 7-AMINOACTINOMYCIN D' AC2 Software ? ? ? ? 10 'BINDING SITE FOR CHAIN F OF 7-AMINOACTINOMYCIN D' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DA A 3 ? DA A 3 . ? 1_555 ? 2 AC1 8 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 8 BRU A 5 ? BRU A 5 . ? 1_555 ? 4 AC1 8 DT A 6 ? DT A 6 . ? 1_555 ? 5 AC1 8 DT B 6 ? DT B 6 . ? 7_556 ? 6 AC1 8 DG C 4 ? DG C 4 . ? 1_555 ? 7 AC1 8 BRU C 5 ? BRU C 5 . ? 1_555 ? 8 AC1 8 DT D 2 ? DT D 2 . ? 7_556 ? 9 AC2 10 DT A 2 ? DT A 2 . ? 7_546 ? 10 AC2 10 DA A 3 ? DA A 3 . ? 7_546 ? 11 AC2 10 HOH G . ? HOH A 2001 . ? 7_546 ? 12 AC2 10 DG B 4 ? DG B 4 . ? 1_555 ? 13 AC2 10 BRU B 5 ? BRU B 5 . ? 1_555 ? 14 AC2 10 DA D 3 ? DA D 3 . ? 1_555 ? 15 AC2 10 DG D 4 ? DG D 4 . ? 3_556 ? 16 AC2 10 DG D 4 ? DG D 4 . ? 1_555 ? 17 AC2 10 BRU D 5 ? BRU D 5 . ? 1_555 ? 18 AC2 10 DT D 6 ? DT D 6 . ? 1_555 ? # _database_PDB_matrix.entry_id 1UNM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1UNM _atom_sites.fract_transf_matrix[1][1] 0.019385 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014089 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025347 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 BRU 5 5 5 BRU BRU A . n A 1 6 DT 6 6 6 DT DT A . n B 1 1 DT 1 1 ? ? ? B . n B 1 2 DT 2 2 2 DT DT B . n B 1 3 DA 3 3 3 DA DA B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 BRU 5 5 5 BRU BRU B . n B 1 6 DT 6 6 6 DT DT B . n C 1 1 DT 1 1 ? ? ? C . n C 1 2 DT 2 2 2 DT DT C . n C 1 3 DA 3 3 3 DA DA C . n C 1 4 DG 4 4 4 DG DG C . n C 1 5 BRU 5 5 5 BRU BRU C . n C 1 6 DT 6 6 6 DT DT C . n D 1 1 DT 1 1 ? ? ? D . n D 1 2 DT 2 2 2 DT DT D . n D 1 3 DA 3 3 3 DA DA D . n D 1 4 DG 4 4 4 DG DG D . n D 1 5 BRU 5 5 5 BRU BRU D . n D 1 6 DT 6 6 6 DT DT D . n E 2 1 THR 1 1 1 THR THR E . n E 2 2 DVA 2 2 2 DVA DVA E . n E 2 3 PRO 3 3 3 PRO PRO E . n E 2 4 SAR 4 4 4 SAR SAR E . n E 2 5 MVA 5 5 5 MVA MVA E . n E 2 6 PX1 6 6 6 PX1 PX1 E . n E 2 7 THR 7 7 7 THR THR E . n E 2 8 DVA 8 8 8 DVA DVA E . n E 2 9 PRO 9 9 9 PRO PRO E . n E 2 10 SAR 10 10 10 SAR SAR E . n E 2 11 MVA 11 11 11 MVA MVA E . n F 2 1 THR 1 1 1 THR THR F . n F 2 2 DVA 2 2 2 DVA DVA F . n F 2 3 PRO 3 3 3 PRO PRO F . n F 2 4 SAR 4 4 4 SAR SAR F . n F 2 5 MVA 5 5 5 MVA MVA F . n F 2 6 PX1 6 6 6 PX1 PX1 F . n F 2 7 THR 7 7 7 THR THR F . n F 2 8 DVA 8 8 8 DVA DVA F . n F 2 9 PRO 9 9 9 PRO PRO F . n F 2 10 SAR 10 10 10 SAR SAR F . n F 2 11 MVA 11 11 11 MVA MVA F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 HOH 1 2001 2001 HOH HOH A . G 3 HOH 2 2002 2002 HOH HOH A . G 3 HOH 3 2003 2003 HOH HOH A . G 3 HOH 4 2004 2004 HOH HOH A . H 3 HOH 1 2001 2001 HOH HOH B . H 3 HOH 2 2002 2002 HOH HOH B . I 3 HOH 1 2001 2001 HOH HOH C . I 3 HOH 2 2002 2002 HOH HOH C . I 3 HOH 3 2003 2003 HOH HOH C . I 3 HOH 4 2004 2004 HOH HOH C . I 3 HOH 5 2005 2005 HOH HOH C . J 3 HOH 1 2001 2001 HOH HOH D . J 3 HOH 2 2002 2002 HOH HOH D . # _pdbx_molecule_features.prd_id PRD_000010 _pdbx_molecule_features.name 7-AminoActinomycin _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PX1) THE CHROMOPHORE PX1 IS A MODIFIED PXZ WITH C-NH2 REPLACING C-H IN POSITION 7 OF THE PHENOXAZONE RING. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000010 E 2 PRD_000010 F # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 5 A BRU 5 ? DU ? 2 B BRU 5 B BRU 5 ? DU ? 3 C BRU 5 C BRU 5 ? DU ? 4 D BRU 5 D BRU 5 ? DU ? 5 E SAR 4 E SAR 4 ? GLY SARCOSINE 6 E MVA 5 E MVA 5 ? VAL N-METHYLVALINE 7 E SAR 10 E SAR 10 ? GLY SARCOSINE 8 E MVA 11 E MVA 11 ? VAL N-METHYLVALINE 9 F SAR 4 F SAR 4 ? GLY SARCOSINE 10 F MVA 5 F MVA 5 ? VAL N-METHYLVALINE 11 F SAR 10 F SAR 10 ? GLY SARCOSINE 12 F MVA 11 F MVA 11 ? VAL N-METHYLVALINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-07-20 4 'Structure model' 1 3 2012-11-30 5 'Structure model' 1 4 2019-05-08 6 'Structure model' 1 5 2019-05-22 7 'Structure model' 1 6 2019-07-24 8 'Structure model' 1 7 2019-10-23 9 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' 5 2 'Structure model' 'Version format compliance' 6 3 'Structure model' Other 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' Other 9 5 'Structure model' Advisory 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Experimental preparation' 13 5 'Structure model' Other 14 6 'Structure model' 'Data collection' 15 6 'Structure model' 'Refinement description' 16 7 'Structure model' 'Data collection' 17 8 'Structure model' 'Data collection' 18 8 'Structure model' 'Database references' 19 8 'Structure model' Other 20 9 'Structure model' 'Atomic model' 21 9 'Structure model' 'Data collection' 22 9 'Structure model' 'Database references' 23 9 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_PDB_rev 2 5 'Structure model' database_PDB_rev_record 3 5 'Structure model' exptl_crystal_grow 4 5 'Structure model' pdbx_database_proc 5 5 'Structure model' pdbx_database_status 6 5 'Structure model' pdbx_seq_map_depositor_info 7 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 8 5 'Structure model' pdbx_validate_polymer_linkage 9 5 'Structure model' struct_conn 10 6 'Structure model' pdbx_seq_map_depositor_info 11 6 'Structure model' refine 12 7 'Structure model' diffrn_source 13 8 'Structure model' pdbx_database_status 14 8 'Structure model' struct_ref_seq_dif 15 9 'Structure model' atom_site 16 9 'Structure model' chem_comp_atom 17 9 'Structure model' chem_comp_bond 18 9 'Structure model' database_2 19 9 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_exptl_crystal_grow.method' 2 5 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 6 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 6 6 'Structure model' '_refine.pdbx_ls_cross_valid_method' 7 7 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 8 8 'Structure model' '_pdbx_database_status.status_code_sf' 9 8 'Structure model' '_struct_ref_seq_dif.details' 10 9 'Structure model' '_atom_site.auth_atom_id' 11 9 'Structure model' '_atom_site.label_atom_id' 12 9 'Structure model' '_database_2.pdbx_DOI' 13 9 'Structure model' '_database_2.pdbx_database_accession' 14 9 'Structure model' '_struct_conn.pdbx_dist_value' 15 9 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 16 9 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 9 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 9 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 9 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 9 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 9 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELXD phasing . ? 4 # _pdbx_entry_details.entry_id 1UNM _pdbx_entry_details.compound_details ;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) GROUP: 1 NAME: ACTINOMYCIN D CHAIN: E, F COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 11 DESCRIPTION: ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PX1) THE CHROMOPHORE PX1 IS A MODIFIED PXZ WITH C-NH2 REPLACING C-H IN POSITION 7 OF THE PHENOXAZONE RING. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 111.28 108.30 2.98 0.30 N 2 1 "O4'" C DA 3 ? ? "C1'" C DA 3 ? ? N9 C DA 3 ? ? 103.11 108.00 -4.89 0.70 N 3 1 "O4'" D DT 6 ? ? "C1'" D DT 6 ? ? N1 D DT 6 ? ? 101.86 108.00 -6.14 0.70 N # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id PRO _pdbx_validate_main_chain_plane.auth_asym_id E _pdbx_validate_main_chain_plane.auth_seq_id 9 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -11.77 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DT 1 ? "O5'" ? A DT 1 "O5'" 2 1 Y 1 A DT 1 ? "C5'" ? A DT 1 "C5'" 3 1 Y 1 B DT 2 ? P ? B DT 2 P 4 1 Y 1 B DT 2 ? OP1 ? B DT 2 OP1 5 1 Y 1 B DT 2 ? OP2 ? B DT 2 OP2 6 1 Y 1 B DT 2 ? "O5'" ? B DT 2 "O5'" 7 1 Y 1 B DT 2 ? "C5'" ? B DT 2 "C5'" 8 1 Y 1 B DT 2 ? "C4'" ? B DT 2 "C4'" 9 1 Y 1 B DT 2 ? "O4'" ? B DT 2 "O4'" 10 1 Y 1 B DT 2 ? "C3'" ? B DT 2 "C3'" 11 1 Y 1 B DT 2 ? "C2'" ? B DT 2 "C2'" 12 1 Y 1 B DT 2 ? "C1'" ? B DT 2 "C1'" 13 1 Y 1 B DT 2 ? N1 ? B DT 2 N1 14 1 Y 1 B DT 2 ? C2 ? B DT 2 C2 15 1 Y 1 B DT 2 ? O2 ? B DT 2 O2 16 1 Y 1 B DT 2 ? N3 ? B DT 2 N3 17 1 Y 1 B DT 2 ? C4 ? B DT 2 C4 18 1 Y 1 B DT 2 ? O4 ? B DT 2 O4 19 1 Y 1 B DT 2 ? C5 ? B DT 2 C5 20 1 Y 1 B DT 2 ? C7 ? B DT 2 C7 21 1 Y 1 B DT 2 ? C6 ? B DT 2 C6 22 1 Y 1 B DT 6 ? "O3'" ? B DT 6 "O3'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B DT 1 ? B DT 1 2 1 Y 1 C DT 1 ? C DT 1 3 1 Y 1 D DT 1 ? D DT 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DG OP3 O N N 70 DG P P N N 71 DG OP1 O N N 72 DG OP2 O N N 73 DG "O5'" O N N 74 DG "C5'" C N N 75 DG "C4'" C N R 76 DG "O4'" O N N 77 DG "C3'" C N S 78 DG "O3'" O N N 79 DG "C2'" C N N 80 DG "C1'" C N R 81 DG N9 N Y N 82 DG C8 C Y N 83 DG N7 N Y N 84 DG C5 C Y N 85 DG C6 C N N 86 DG O6 O N N 87 DG N1 N N N 88 DG C2 C N N 89 DG N2 N N N 90 DG N3 N N N 91 DG C4 C Y N 92 DG HOP3 H N N 93 DG HOP2 H N N 94 DG "H5'" H N N 95 DG "H5''" H N N 96 DG "H4'" H N N 97 DG "H3'" H N N 98 DG "HO3'" H N N 99 DG "H2'" H N N 100 DG "H2''" H N N 101 DG "H1'" H N N 102 DG H8 H N N 103 DG H1 H N N 104 DG H21 H N N 105 DG H22 H N N 106 DT OP3 O N N 107 DT P P N N 108 DT OP1 O N N 109 DT OP2 O N N 110 DT "O5'" O N N 111 DT "C5'" C N N 112 DT "C4'" C N R 113 DT "O4'" O N N 114 DT "C3'" C N S 115 DT "O3'" O N N 116 DT "C2'" C N N 117 DT "C1'" C N R 118 DT N1 N N N 119 DT C2 C N N 120 DT O2 O N N 121 DT N3 N N N 122 DT C4 C N N 123 DT O4 O N N 124 DT C5 C N N 125 DT C7 C N N 126 DT C6 C N N 127 DT HOP3 H N N 128 DT HOP2 H N N 129 DT "H5'" H N N 130 DT "H5''" H N N 131 DT "H4'" H N N 132 DT "H3'" H N N 133 DT "HO3'" H N N 134 DT "H2'" H N N 135 DT "H2''" H N N 136 DT "H1'" H N N 137 DT H3 H N N 138 DT H71 H N N 139 DT H72 H N N 140 DT H73 H N N 141 DT H6 H N N 142 DVA N N N N 143 DVA CA C N R 144 DVA CB C N N 145 DVA CG1 C N N 146 DVA CG2 C N N 147 DVA C C N N 148 DVA O O N N 149 DVA OXT O N N 150 DVA H H N N 151 DVA H2 H N N 152 DVA HA H N N 153 DVA HB H N N 154 DVA HG11 H N N 155 DVA HG12 H N N 156 DVA HG13 H N N 157 DVA HG21 H N N 158 DVA HG22 H N N 159 DVA HG23 H N N 160 DVA HXT H N N 161 HOH O O N N 162 HOH H1 H N N 163 HOH H2 H N N 164 MVA N N N N 165 MVA CN C N N 166 MVA CA C N S 167 MVA CB C N N 168 MVA CG1 C N N 169 MVA CG2 C N N 170 MVA C C N N 171 MVA O O N N 172 MVA OXT O N N 173 MVA H H N N 174 MVA HN1 H N N 175 MVA HN2 H N N 176 MVA HN3 H N N 177 MVA HA H N N 178 MVA HB H N N 179 MVA HG11 H N N 180 MVA HG12 H N N 181 MVA HG13 H N N 182 MVA HG21 H N N 183 MVA HG22 H N N 184 MVA HG23 H N N 185 MVA HXT H N N 186 PRO N N N N 187 PRO CA C N S 188 PRO C C N N 189 PRO O O N N 190 PRO CB C N N 191 PRO CG C N N 192 PRO CD C N N 193 PRO OXT O N N 194 PRO H H N N 195 PRO HA H N N 196 PRO HB2 H N N 197 PRO HB3 H N N 198 PRO HG2 H N N 199 PRO HG3 H N N 200 PRO HD2 H N N 201 PRO HD3 H N N 202 PRO HXT H N N 203 PX1 C1 C N N 204 PX1 C0 C N N 205 PX1 O1 O N N 206 PX1 C2 C N N 207 PX1 N2 N N N 208 PX1 C3 C N N 209 PX1 O3 O N N 210 PX1 C4 C N N 211 PX1 O5 O N N 212 PX1 C6 C Y N 213 PX1 C7 C Y N 214 PX1 C8 C Y N 215 PX1 C9 C Y N 216 PX1 "C0'" C N N 217 PX1 "O1'" O N N 218 PX1 N10 N N N 219 PX1 C11 C N N 220 PX1 C12 C N N 221 PX1 C13 C Y N 222 PX1 C14 C Y N 223 PX1 C15 C N N 224 PX1 C16 C N N 225 PX1 N7 N N N 226 PX1 H1 H N N 227 PX1 H4 H N N 228 PX1 H3 H N N 229 PX1 H8 H N N 230 PX1 H9 H N N 231 PX1 H151 H N N 232 PX1 H152 H N N 233 PX1 H153 H N N 234 PX1 H161 H N N 235 PX1 H162 H N N 236 PX1 H163 H N N 237 PX1 H7N1 H N N 238 PX1 H7N2 H N N 239 PXZ C1 C Y N 240 PXZ C0 C N N 241 PXZ O1 O N N 242 PXZ C2 C Y N 243 PXZ N2 N N N 244 PXZ C3 C Y N 245 PXZ O3 O N N 246 PXZ C4 C Y N 247 PXZ O5 O Y N 248 PXZ C6 C Y N 249 PXZ C7 C Y N 250 PXZ C8 C Y N 251 PXZ C9 C Y N 252 PXZ "C0'" C N N 253 PXZ "O1'" O N N 254 PXZ N10 N Y N 255 PXZ C11 C Y N 256 PXZ C12 C Y N 257 PXZ C13 C Y N 258 PXZ C14 C Y N 259 PXZ C15 C N N 260 PXZ C16 C N N 261 PXZ H1 H N N 262 PXZ HN21 H N N 263 PXZ HN22 H N N 264 PXZ H7 H N N 265 PXZ H8 H N N 266 PXZ "H1'" H N N 267 PXZ H151 H N N 268 PXZ H152 H N N 269 PXZ H153 H N N 270 PXZ H161 H N N 271 PXZ H162 H N N 272 PXZ H163 H N N 273 SAR N N N N 274 SAR CA C N N 275 SAR C C N N 276 SAR O O N N 277 SAR CN C N N 278 SAR OXT O N N 279 SAR H H N N 280 SAR HA2 H N N 281 SAR HA3 H N N 282 SAR HN1 H N N 283 SAR HN2 H N N 284 SAR HN3 H N N 285 SAR HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DG OP3 P sing N N 73 DG OP3 HOP3 sing N N 74 DG P OP1 doub N N 75 DG P OP2 sing N N 76 DG P "O5'" sing N N 77 DG OP2 HOP2 sing N N 78 DG "O5'" "C5'" sing N N 79 DG "C5'" "C4'" sing N N 80 DG "C5'" "H5'" sing N N 81 DG "C5'" "H5''" sing N N 82 DG "C4'" "O4'" sing N N 83 DG "C4'" "C3'" sing N N 84 DG "C4'" "H4'" sing N N 85 DG "O4'" "C1'" sing N N 86 DG "C3'" "O3'" sing N N 87 DG "C3'" "C2'" sing N N 88 DG "C3'" "H3'" sing N N 89 DG "O3'" "HO3'" sing N N 90 DG "C2'" "C1'" sing N N 91 DG "C2'" "H2'" sing N N 92 DG "C2'" "H2''" sing N N 93 DG "C1'" N9 sing N N 94 DG "C1'" "H1'" sing N N 95 DG N9 C8 sing Y N 96 DG N9 C4 sing Y N 97 DG C8 N7 doub Y N 98 DG C8 H8 sing N N 99 DG N7 C5 sing Y N 100 DG C5 C6 sing N N 101 DG C5 C4 doub Y N 102 DG C6 O6 doub N N 103 DG C6 N1 sing N N 104 DG N1 C2 sing N N 105 DG N1 H1 sing N N 106 DG C2 N2 sing N N 107 DG C2 N3 doub N N 108 DG N2 H21 sing N N 109 DG N2 H22 sing N N 110 DG N3 C4 sing N N 111 DT OP3 P sing N N 112 DT OP3 HOP3 sing N N 113 DT P OP1 doub N N 114 DT P OP2 sing N N 115 DT P "O5'" sing N N 116 DT OP2 HOP2 sing N N 117 DT "O5'" "C5'" sing N N 118 DT "C5'" "C4'" sing N N 119 DT "C5'" "H5'" sing N N 120 DT "C5'" "H5''" sing N N 121 DT "C4'" "O4'" sing N N 122 DT "C4'" "C3'" sing N N 123 DT "C4'" "H4'" sing N N 124 DT "O4'" "C1'" sing N N 125 DT "C3'" "O3'" sing N N 126 DT "C3'" "C2'" sing N N 127 DT "C3'" "H3'" sing N N 128 DT "O3'" "HO3'" sing N N 129 DT "C2'" "C1'" sing N N 130 DT "C2'" "H2'" sing N N 131 DT "C2'" "H2''" sing N N 132 DT "C1'" N1 sing N N 133 DT "C1'" "H1'" sing N N 134 DT N1 C2 sing N N 135 DT N1 C6 sing N N 136 DT C2 O2 doub N N 137 DT C2 N3 sing N N 138 DT N3 C4 sing N N 139 DT N3 H3 sing N N 140 DT C4 O4 doub N N 141 DT C4 C5 sing N N 142 DT C5 C7 sing N N 143 DT C5 C6 doub N N 144 DT C7 H71 sing N N 145 DT C7 H72 sing N N 146 DT C7 H73 sing N N 147 DT C6 H6 sing N N 148 DVA N CA sing N N 149 DVA N H sing N N 150 DVA N H2 sing N N 151 DVA CA CB sing N N 152 DVA CA C sing N N 153 DVA CA HA sing N N 154 DVA CB CG1 sing N N 155 DVA CB CG2 sing N N 156 DVA CB HB sing N N 157 DVA CG1 HG11 sing N N 158 DVA CG1 HG12 sing N N 159 DVA CG1 HG13 sing N N 160 DVA CG2 HG21 sing N N 161 DVA CG2 HG22 sing N N 162 DVA CG2 HG23 sing N N 163 DVA C O doub N N 164 DVA C OXT sing N N 165 DVA OXT HXT sing N N 166 HOH O H1 sing N N 167 HOH O H2 sing N N 168 MVA N CN sing N N 169 MVA N CA sing N N 170 MVA N H sing N N 171 MVA CN HN1 sing N N 172 MVA CN HN2 sing N N 173 MVA CN HN3 sing N N 174 MVA CA CB sing N N 175 MVA CA C sing N N 176 MVA CA HA sing N N 177 MVA CB CG1 sing N N 178 MVA CB CG2 sing N N 179 MVA CB HB sing N N 180 MVA CG1 HG11 sing N N 181 MVA CG1 HG12 sing N N 182 MVA CG1 HG13 sing N N 183 MVA CG2 HG21 sing N N 184 MVA CG2 HG22 sing N N 185 MVA CG2 HG23 sing N N 186 MVA C O doub N N 187 MVA C OXT sing N N 188 MVA OXT HXT sing N N 189 PRO N CA sing N N 190 PRO N CD sing N N 191 PRO N H sing N N 192 PRO CA C sing N N 193 PRO CA CB sing N N 194 PRO CA HA sing N N 195 PRO C O doub N N 196 PRO C OXT sing N N 197 PRO CB CG sing N N 198 PRO CB HB2 sing N N 199 PRO CB HB3 sing N N 200 PRO CG CD sing N N 201 PRO CG HG2 sing N N 202 PRO CG HG3 sing N N 203 PRO CD HD2 sing N N 204 PRO CD HD3 sing N N 205 PRO OXT HXT sing N N 206 PX1 C1 C0 doub N E 207 PX1 C1 C2 sing N N 208 PX1 C1 C11 sing N N 209 PX1 C0 O1 sing N N 210 PX1 C0 H1 sing N N 211 PX1 O1 H4 sing N N 212 PX1 C2 N2 doub N N 213 PX1 C2 C3 sing N N 214 PX1 N2 H3 sing N N 215 PX1 C3 O3 doub N N 216 PX1 C3 C4 sing N N 217 PX1 C4 C12 doub N N 218 PX1 C4 C15 sing N N 219 PX1 O5 C12 sing N N 220 PX1 O5 C13 sing N N 221 PX1 C6 C7 doub Y N 222 PX1 C6 C13 sing Y N 223 PX1 C6 C16 sing N N 224 PX1 C7 C8 sing Y N 225 PX1 C7 N7 sing N N 226 PX1 C8 C9 doub Y N 227 PX1 C8 H8 sing N N 228 PX1 C9 "C0'" sing N N 229 PX1 C9 C14 sing Y N 230 PX1 "C0'" "O1'" doub N N 231 PX1 "C0'" H9 sing N N 232 PX1 N10 C11 doub N N 233 PX1 N10 C14 sing N N 234 PX1 C11 C12 sing N N 235 PX1 C13 C14 doub Y N 236 PX1 C15 H151 sing N N 237 PX1 C15 H152 sing N N 238 PX1 C15 H153 sing N N 239 PX1 C16 H161 sing N N 240 PX1 C16 H162 sing N N 241 PX1 C16 H163 sing N N 242 PX1 N7 H7N1 sing N N 243 PX1 N7 H7N2 sing N N 244 PXZ C1 C0 sing N N 245 PXZ C1 C2 doub Y N 246 PXZ C1 C11 sing Y N 247 PXZ C0 O1 doub N N 248 PXZ C0 H1 sing N N 249 PXZ C2 N2 sing N N 250 PXZ C2 C3 sing Y N 251 PXZ N2 HN21 sing N N 252 PXZ N2 HN22 sing N N 253 PXZ C3 O3 doub N N 254 PXZ C3 C4 sing Y N 255 PXZ C4 C12 doub Y N 256 PXZ C4 C15 sing N N 257 PXZ O5 C12 sing Y N 258 PXZ O5 C13 sing Y N 259 PXZ C6 C7 doub Y N 260 PXZ C6 C13 sing Y N 261 PXZ C6 C16 sing N N 262 PXZ C7 C8 sing Y N 263 PXZ C7 H7 sing N N 264 PXZ C8 C9 doub Y N 265 PXZ C8 H8 sing N N 266 PXZ C9 "C0'" sing N N 267 PXZ C9 C14 sing Y N 268 PXZ "C0'" "O1'" doub N N 269 PXZ "C0'" "H1'" sing N N 270 PXZ N10 C11 doub Y N 271 PXZ N10 C14 sing Y N 272 PXZ C11 C12 sing Y N 273 PXZ C13 C14 doub Y N 274 PXZ C15 H151 sing N N 275 PXZ C15 H152 sing N N 276 PXZ C15 H153 sing N N 277 PXZ C16 H161 sing N N 278 PXZ C16 H162 sing N N 279 PXZ C16 H163 sing N N 280 SAR N CA sing N N 281 SAR N CN sing N N 282 SAR N H sing N N 283 SAR CA C sing N N 284 SAR CA HA2 sing N N 285 SAR CA HA3 sing N N 286 SAR C O doub N N 287 SAR C OXT sing N N 288 SAR CN HN1 sing N N 289 SAR CN HN2 sing N N 290 SAR CN HN3 sing N N 291 SAR OXT HXT sing N N 292 THR N CA sing N N 293 THR N H sing N N 294 THR N H2 sing N N 295 THR CA C sing N N 296 THR CA CB sing N N 297 THR CA HA sing N N 298 THR C O doub N N 299 THR C OXT sing N N 300 THR CB OG1 sing N N 301 THR CB CG2 sing N N 302 THR CB HB sing N N 303 THR OG1 HG1 sing N N 304 THR CG2 HG21 sing N N 305 THR CG2 HG22 sing N N 306 THR CG2 HG23 sing N N 307 THR OXT HXT sing N N 308 # _ndb_struct_conf_na.entry_id 1UNM _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A BRU 5 1_555 C DG 4 1_555 2.222 -0.559 0.632 -1.930 -6.663 3.956 1 A_BRU5:DG4_C A 5 ? C 4 ? 28 1 1 A DT 6 1_555 C DA 3 1_555 -0.334 -0.159 -0.001 10.575 -9.944 -1.004 2 A_DT6:DA3_C A 6 ? C 3 ? 20 1 1 B DA 3 1_555 D DT 6 1_555 0.266 -0.194 0.234 -5.506 -12.148 -0.531 3 B_DA3:DT6_D B 3 ? D 6 ? 20 1 1 B DG 4 1_555 D BRU 5 1_555 -2.197 -0.385 0.283 4.466 3.761 7.544 4 B_DG4:BRU5_D B 4 ? D 5 ? 28 1 1 B BRU 5 1_555 D DG 4 1_555 2.334 -0.746 0.297 -9.496 6.632 -9.873 5 B_BRU5:DG4_D B 5 ? D 4 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A BRU 5 1_555 C DG 4 1_555 A DT 6 1_555 C DA 3 1_555 -0.300 0.067 2.885 7.077 9.608 17.652 -3.273 3.357 2.329 27.585 -20.319 21.281 1 AA_BRU5DT6:DA3DG4_CC A 5 ? C 4 ? A 6 ? C 3 ? 1 A DT 6 1_555 C DA 3 1_555 B DA 3 1_555 D DT 6 1_555 -0.003 1.877 4.110 -0.779 -6.292 -24.516 -1.857 -0.308 4.443 14.510 -1.797 -25.310 2 AB_DT6DA3:DT6DA3_DC A 6 ? C 3 ? B 3 ? D 6 ? 1 B DA 3 1_555 D DT 6 1_555 B DG 4 1_555 D BRU 5 1_555 0.589 0.341 3.051 -2.298 12.843 15.202 -4.778 -2.726 2.473 40.204 7.193 20.008 3 BB_DA3DG4:BRU5DT6_DD B 3 ? D 6 ? B 4 ? D 5 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #