data_1UV7 # _entry.id 1UV7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1UV7 PDBE EBI-13183 WWPDB D_1290013183 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UV7 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2004-01-15 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abendroth, J.' 1 'Hol, W.G.J.' 2 # _citation.id primary _citation.title ;The Crystal Structure of the Periplasmic Domain of the Type II Secretion System Protein Epsm from Vibrio Cholerae: The Simplest Version of the Ferredoxin Fold ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 338 _citation.page_first 585 _citation.page_last ? _citation.year 2004 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15081815 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2004.01.064 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abendroth, J.' 1 ? primary 'Rice, A.' 2 ? primary 'Mcluskey, K.' 3 ? primary 'Bagdasarian, M.' 4 ? primary 'Hol, W.G.J.' 5 ? # _cell.entry_id 1UV7 _cell.length_a 52.879 _cell.length_b 52.879 _cell.length_c 112.484 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UV7 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GENERAL SECRETION PATHWAY PROTEIN M' 12639.798 2 ? ? 'PERIPLASMIC DOMAIN, RESIDUES 65-165' ? 2 water nat water 18.015 70 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CHOLERA TOXIN SECRETION PROTEIN EPSM' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SENANDIVTLRAQGGSDAPSDQPLNQVITNSTRQFNIELIRVQPRGE(MSE)(MSE)QVWIQPLPFSQLVSWIAY LQERQGVSVDAIDIDRGKVNGVVEVKRLQLKRGGLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSENANDIVTLRAQGGSDAPSDQPLNQVITNSTRQFNIELIRVQPRGEMMQVWIQPLPFSQLVSWIAYLQERQGVSVDAI DIDRGKVNGVVEVKRLQLKRGGLEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 GLU n 1 4 ASN n 1 5 ALA n 1 6 ASN n 1 7 ASP n 1 8 ILE n 1 9 VAL n 1 10 THR n 1 11 LEU n 1 12 ARG n 1 13 ALA n 1 14 GLN n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 ASP n 1 19 ALA n 1 20 PRO n 1 21 SER n 1 22 ASP n 1 23 GLN n 1 24 PRO n 1 25 LEU n 1 26 ASN n 1 27 GLN n 1 28 VAL n 1 29 ILE n 1 30 THR n 1 31 ASN n 1 32 SER n 1 33 THR n 1 34 ARG n 1 35 GLN n 1 36 PHE n 1 37 ASN n 1 38 ILE n 1 39 GLU n 1 40 LEU n 1 41 ILE n 1 42 ARG n 1 43 VAL n 1 44 GLN n 1 45 PRO n 1 46 ARG n 1 47 GLY n 1 48 GLU n 1 49 MSE n 1 50 MSE n 1 51 GLN n 1 52 VAL n 1 53 TRP n 1 54 ILE n 1 55 GLN n 1 56 PRO n 1 57 LEU n 1 58 PRO n 1 59 PHE n 1 60 SER n 1 61 GLN n 1 62 LEU n 1 63 VAL n 1 64 SER n 1 65 TRP n 1 66 ILE n 1 67 ALA n 1 68 TYR n 1 69 LEU n 1 70 GLN n 1 71 GLU n 1 72 ARG n 1 73 GLN n 1 74 GLY n 1 75 VAL n 1 76 SER n 1 77 VAL n 1 78 ASP n 1 79 ALA n 1 80 ILE n 1 81 ASP n 1 82 ILE n 1 83 ASP n 1 84 ARG n 1 85 GLY n 1 86 LYS n 1 87 VAL n 1 88 ASN n 1 89 GLY n 1 90 VAL n 1 91 VAL n 1 92 GLU n 1 93 VAL n 1 94 LYS n 1 95 ARG n 1 96 LEU n 1 97 GLN n 1 98 LEU n 1 99 LYS n 1 100 ARG n 1 101 GLY n 1 102 GLY n 1 103 LEU n 1 104 GLU n 1 105 HIS n 1 106 HIS n 1 107 HIS n 1 108 HIS n 1 109 HIS n 1 110 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'VIBRIO CHOLERAE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 666 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET21D(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1UV7 1 ? ? 1UV7 ? 2 UNP GSPM_VIBCH 1 ? ? P41851 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1UV7 A 1 ? 1 ? 1UV7 64 ? 64 ? 64 64 2 2 1UV7 A 2 ? 102 ? P41851 65 ? 165 ? 65 165 3 1 1UV7 A 103 ? 110 ? 1UV7 166 ? 173 ? 166 173 4 1 1UV7 B 1 ? 1 ? 1UV7 64 ? 64 ? 64 64 5 2 1UV7 B 2 ? 102 ? P41851 65 ? 165 ? 65 165 6 1 1UV7 B 103 ? 110 ? 1UV7 166 ? 173 ? 166 173 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1UV7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.8 _exptl_crystal.density_percent_sol 32.4 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;6-12MG/ML PROTEIN IN 20MM TRIS PH8, 150MM NACL, 1MM TCEP; RESERVOIR: 2.4-3.0M SODIUM MALONATE, 100MM TRIS PH~8; CRYSTALLISATION: 1.5MKL PROTEIN + 1.5MKL RESERVIOR, 4C, pH 8.00 ; # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2002-12-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9791 1.0 2 0.9795 1.0 3 0.9686 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9791,0.9795,0.9686 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1UV7 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.290 _reflns.d_resolution_high 1.700 _reflns.number_obs 20676 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.04700 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.0000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.610 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.79 _reflns_shell.percent_possible_all 93.4 _reflns_shell.Rmerge_I_obs 0.62700 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.600 _reflns_shell.pdbx_redundancy 5.50 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1UV7 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 19604 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.6 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.196 _refine.ls_R_factor_R_free 0.242 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1027 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 21.95 _refine.aniso_B[1][1] -0.42000 _refine.aniso_B[2][2] -0.42000 _refine.aniso_B[3][3] 0.63000 _refine.aniso_B[1][2] -0.21000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL PLUS MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. N-TERM 65-85 DISORDERED, LOOP 149-152 DISORDERED, HIS6-TAG DISORDERED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.103 _refine.pdbx_overall_ESU_R_Free 0.108 _refine.overall_SU_ML 0.081 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.489 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1228 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 1298 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 1262 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1216 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.302 1.948 ? 1704 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.068 3.000 ? 2820 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.469 5.000 ? 146 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.158 0.200 ? 196 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.020 ? 1344 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 242 'X-RAY DIFFRACTION' ? r_nbd_refined 0.234 0.200 ? 236 'X-RAY DIFFRACTION' ? r_nbd_other 0.253 0.200 ? 1415 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.090 0.200 ? 885 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.214 0.200 ? 46 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.159 0.200 ? 21 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.305 0.200 ? 43 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.178 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.520 1.500 ? 750 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.700 2.000 ? 1232 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 4.706 3.000 ? 512 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 6.926 4.500 ? 472 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.74 _refine_ls_shell.number_reflns_R_work 1410 _refine_ls_shell.R_factor_R_work 0.2620 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2740 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.609380 _struct_ncs_oper.matrix[1][2] -0.791770 _struct_ncs_oper.matrix[1][3] 0.041790 _struct_ncs_oper.matrix[2][1] -0.792000 _struct_ncs_oper.matrix[2][2] 0.605400 _struct_ncs_oper.matrix[2][3] -0.078880 _struct_ncs_oper.matrix[3][1] 0.037160 _struct_ncs_oper.matrix[3][2] -0.081170 _struct_ncs_oper.matrix[3][3] -0.996010 _struct_ncs_oper.vector[1] 78.71606 _struct_ncs_oper.vector[2] 39.90469 _struct_ncs_oper.vector[3] 18.97545 # _struct.entry_id 1UV7 _struct.title 'periplasmic domain of EpsM from Vibrio cholerae' _struct.pdbx_descriptor 'GENERAL SECRETION PATHWAY PROTEIN M' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UV7 _struct_keywords.pdbx_keywords TRANSPORT _struct_keywords.text 'GENERAL SECRETION PATHWAY, VIBRIO CHOLERAE, TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 24 ? ASN A 37 ? PRO A 87 ASN A 100 1 ? 14 HELX_P HELX_P2 2 PRO A 58 ? GLN A 73 ? PRO A 121 GLN A 136 1 ? 16 HELX_P HELX_P3 3 PRO B 24 ? PHE B 36 ? PRO B 87 PHE B 99 1 ? 13 HELX_P HELX_P4 4 PRO B 58 ? GLN B 73 ? PRO B 121 GLN B 136 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A GLU 48 C ? ? ? 1_555 A MSE 49 N ? ? A GLU 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale both ? A MSE 49 C ? ? ? 1_555 A MSE 50 N ? ? A MSE 112 A MSE 113 1_555 ? ? ? ? ? ? ? 1.322 ? covale3 covale both ? A MSE 50 C ? ? ? 1_555 A GLN 51 N ? ? A MSE 113 A GLN 114 1_555 ? ? ? ? ? ? ? 1.323 ? covale4 covale both ? B GLU 48 C ? ? ? 1_555 B MSE 49 N ? ? B GLU 111 B MSE 112 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale both ? B MSE 49 C ? ? ? 1_555 B MSE 50 N ? ? B MSE 112 B MSE 113 1_555 ? ? ? ? ? ? ? 1.325 ? covale6 covale both ? B MSE 50 C ? ? ? 1_555 B GLN 51 N ? ? B MSE 113 B GLN 114 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? BA ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 40 ? PRO A 45 ? LEU A 103 PRO A 108 AA 2 MSE A 49 ? ILE A 54 ? MSE A 112 ILE A 117 AA 3 VAL A 91 ? LYS A 99 ? VAL A 154 LYS A 162 AA 4 SER A 76 ? ARG A 84 ? SER A 139 ARG A 147 BA 1 LEU B 40 ? ARG B 46 ? LEU B 103 ARG B 109 BA 2 MSE B 49 ? ILE B 54 ? MSE B 112 ILE B 117 BA 3 VAL B 91 ? LYS B 99 ? VAL B 154 LYS B 162 BA 4 SER B 76 ? ARG B 84 ? SER B 139 ARG B 147 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLN A 44 ? N GLN A 107 O GLN A 51 ? O GLN A 114 AA 2 3 N VAL A 52 ? N VAL A 115 O LEU A 96 ? O LEU A 159 AA 3 4 N LYS A 99 ? N LYS A 162 O SER A 76 ? O SER A 139 BA 1 2 N ARG B 46 ? N ARG B 109 O MSE B 49 ? O MSE B 112 BA 2 3 N VAL B 52 ? N VAL B 115 O LEU B 96 ? O LEU B 159 BA 3 4 N LYS B 99 ? N LYS B 162 O SER B 76 ? O SER B 139 # _database_PDB_matrix.entry_id 1UV7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1UV7 _atom_sites.fract_transf_matrix[1][1] 0.018911 _atom_sites.fract_transf_matrix[1][2] 0.010918 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021837 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008890 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 64 ? ? ? A . n A 1 2 SER 2 65 ? ? ? A . n A 1 3 GLU 3 66 ? ? ? A . n A 1 4 ASN 4 67 ? ? ? A . n A 1 5 ALA 5 68 ? ? ? A . n A 1 6 ASN 6 69 ? ? ? A . n A 1 7 ASP 7 70 ? ? ? A . n A 1 8 ILE 8 71 ? ? ? A . n A 1 9 VAL 9 72 ? ? ? A . n A 1 10 THR 10 73 ? ? ? A . n A 1 11 LEU 11 74 ? ? ? A . n A 1 12 ARG 12 75 ? ? ? A . n A 1 13 ALA 13 76 ? ? ? A . n A 1 14 GLN 14 77 ? ? ? A . n A 1 15 GLY 15 78 ? ? ? A . n A 1 16 GLY 16 79 ? ? ? A . n A 1 17 SER 17 80 ? ? ? A . n A 1 18 ASP 18 81 ? ? ? A . n A 1 19 ALA 19 82 ? ? ? A . n A 1 20 PRO 20 83 ? ? ? A . n A 1 21 SER 21 84 ? ? ? A . n A 1 22 ASP 22 85 ? ? ? A . n A 1 23 GLN 23 86 86 GLN GLN A . n A 1 24 PRO 24 87 87 PRO PRO A . n A 1 25 LEU 25 88 88 LEU LEU A . n A 1 26 ASN 26 89 89 ASN ASN A . n A 1 27 GLN 27 90 90 GLN GLN A . n A 1 28 VAL 28 91 91 VAL VAL A . n A 1 29 ILE 29 92 92 ILE ILE A . n A 1 30 THR 30 93 93 THR THR A . n A 1 31 ASN 31 94 94 ASN ASN A . n A 1 32 SER 32 95 95 SER SER A . n A 1 33 THR 33 96 96 THR THR A . n A 1 34 ARG 34 97 97 ARG ARG A . n A 1 35 GLN 35 98 98 GLN GLN A . n A 1 36 PHE 36 99 99 PHE PHE A . n A 1 37 ASN 37 100 100 ASN ASN A . n A 1 38 ILE 38 101 101 ILE ILE A . n A 1 39 GLU 39 102 102 GLU GLU A . n A 1 40 LEU 40 103 103 LEU LEU A . n A 1 41 ILE 41 104 104 ILE ILE A . n A 1 42 ARG 42 105 105 ARG ARG A . n A 1 43 VAL 43 106 106 VAL VAL A . n A 1 44 GLN 44 107 107 GLN GLN A . n A 1 45 PRO 45 108 108 PRO PRO A . n A 1 46 ARG 46 109 109 ARG ARG A . n A 1 47 GLY 47 110 110 GLY GLY A . n A 1 48 GLU 48 111 111 GLU GLU A . n A 1 49 MSE 49 112 112 MSE MSE A . n A 1 50 MSE 50 113 113 MSE MSE A . n A 1 51 GLN 51 114 114 GLN GLN A . n A 1 52 VAL 52 115 115 VAL VAL A . n A 1 53 TRP 53 116 116 TRP TRP A . n A 1 54 ILE 54 117 117 ILE ILE A . n A 1 55 GLN 55 118 118 GLN GLN A . n A 1 56 PRO 56 119 119 PRO PRO A . n A 1 57 LEU 57 120 120 LEU LEU A . n A 1 58 PRO 58 121 121 PRO PRO A . n A 1 59 PHE 59 122 122 PHE PHE A . n A 1 60 SER 60 123 123 SER SER A . n A 1 61 GLN 61 124 124 GLN GLN A . n A 1 62 LEU 62 125 125 LEU LEU A . n A 1 63 VAL 63 126 126 VAL VAL A . n A 1 64 SER 64 127 127 SER SER A . n A 1 65 TRP 65 128 128 TRP TRP A . n A 1 66 ILE 66 129 129 ILE ILE A . n A 1 67 ALA 67 130 130 ALA ALA A . n A 1 68 TYR 68 131 131 TYR TYR A . n A 1 69 LEU 69 132 132 LEU LEU A . n A 1 70 GLN 70 133 133 GLN GLN A . n A 1 71 GLU 71 134 134 GLU GLU A . n A 1 72 ARG 72 135 135 ARG ARG A . n A 1 73 GLN 73 136 136 GLN GLN A . n A 1 74 GLY 74 137 137 GLY GLY A . n A 1 75 VAL 75 138 138 VAL VAL A . n A 1 76 SER 76 139 139 SER SER A . n A 1 77 VAL 77 140 140 VAL VAL A . n A 1 78 ASP 78 141 141 ASP ASP A . n A 1 79 ALA 79 142 142 ALA ALA A . n A 1 80 ILE 80 143 143 ILE ILE A . n A 1 81 ASP 81 144 144 ASP ASP A . n A 1 82 ILE 82 145 145 ILE ILE A . n A 1 83 ASP 83 146 146 ASP ASP A . n A 1 84 ARG 84 147 147 ARG ARG A . n A 1 85 GLY 85 148 148 GLY GLY A . n A 1 86 LYS 86 149 ? ? ? A . n A 1 87 VAL 87 150 ? ? ? A . n A 1 88 ASN 88 151 ? ? ? A . n A 1 89 GLY 89 152 ? ? ? A . n A 1 90 VAL 90 153 153 VAL VAL A . n A 1 91 VAL 91 154 154 VAL VAL A . n A 1 92 GLU 92 155 155 GLU GLU A . n A 1 93 VAL 93 156 156 VAL VAL A . n A 1 94 LYS 94 157 157 LYS LYS A . n A 1 95 ARG 95 158 158 ARG ARG A . n A 1 96 LEU 96 159 159 LEU LEU A . n A 1 97 GLN 97 160 160 GLN GLN A . n A 1 98 LEU 98 161 161 LEU LEU A . n A 1 99 LYS 99 162 162 LYS LYS A . n A 1 100 ARG 100 163 163 ARG ARG A . n A 1 101 GLY 101 164 164 GLY GLY A . n A 1 102 GLY 102 165 165 GLY GLY A . n A 1 103 LEU 103 166 ? ? ? A . n A 1 104 GLU 104 167 ? ? ? A . n A 1 105 HIS 105 168 ? ? ? A . n A 1 106 HIS 106 169 ? ? ? A . n A 1 107 HIS 107 170 ? ? ? A . n A 1 108 HIS 108 171 ? ? ? A . n A 1 109 HIS 109 172 ? ? ? A . n A 1 110 HIS 110 173 ? ? ? A . n B 1 1 MSE 1 64 ? ? ? B . n B 1 2 SER 2 65 ? ? ? B . n B 1 3 GLU 3 66 ? ? ? B . n B 1 4 ASN 4 67 ? ? ? B . n B 1 5 ALA 5 68 ? ? ? B . n B 1 6 ASN 6 69 ? ? ? B . n B 1 7 ASP 7 70 ? ? ? B . n B 1 8 ILE 8 71 ? ? ? B . n B 1 9 VAL 9 72 ? ? ? B . n B 1 10 THR 10 73 ? ? ? B . n B 1 11 LEU 11 74 ? ? ? B . n B 1 12 ARG 12 75 ? ? ? B . n B 1 13 ALA 13 76 ? ? ? B . n B 1 14 GLN 14 77 ? ? ? B . n B 1 15 GLY 15 78 ? ? ? B . n B 1 16 GLY 16 79 ? ? ? B . n B 1 17 SER 17 80 ? ? ? B . n B 1 18 ASP 18 81 ? ? ? B . n B 1 19 ALA 19 82 ? ? ? B . n B 1 20 PRO 20 83 ? ? ? B . n B 1 21 SER 21 84 ? ? ? B . n B 1 22 ASP 22 85 ? ? ? B . n B 1 23 GLN 23 86 86 GLN GLN B . n B 1 24 PRO 24 87 87 PRO PRO B . n B 1 25 LEU 25 88 88 LEU LEU B . n B 1 26 ASN 26 89 89 ASN ASN B . n B 1 27 GLN 27 90 90 GLN GLN B . n B 1 28 VAL 28 91 91 VAL VAL B . n B 1 29 ILE 29 92 92 ILE ILE B . n B 1 30 THR 30 93 93 THR THR B . n B 1 31 ASN 31 94 94 ASN ASN B . n B 1 32 SER 32 95 95 SER SER B . n B 1 33 THR 33 96 96 THR THR B . n B 1 34 ARG 34 97 97 ARG ARG B . n B 1 35 GLN 35 98 98 GLN GLN B . n B 1 36 PHE 36 99 99 PHE PHE B . n B 1 37 ASN 37 100 100 ASN ASN B . n B 1 38 ILE 38 101 101 ILE ILE B . n B 1 39 GLU 39 102 102 GLU GLU B . n B 1 40 LEU 40 103 103 LEU LEU B . n B 1 41 ILE 41 104 104 ILE ILE B . n B 1 42 ARG 42 105 105 ARG ARG B . n B 1 43 VAL 43 106 106 VAL VAL B . n B 1 44 GLN 44 107 107 GLN GLN B . n B 1 45 PRO 45 108 108 PRO PRO B . n B 1 46 ARG 46 109 109 ARG ARG B . n B 1 47 GLY 47 110 110 GLY GLY B . n B 1 48 GLU 48 111 111 GLU GLU B . n B 1 49 MSE 49 112 112 MSE MSE B . n B 1 50 MSE 50 113 113 MSE MSE B . n B 1 51 GLN 51 114 114 GLN GLN B . n B 1 52 VAL 52 115 115 VAL VAL B . n B 1 53 TRP 53 116 116 TRP TRP B . n B 1 54 ILE 54 117 117 ILE ILE B . n B 1 55 GLN 55 118 118 GLN GLN B . n B 1 56 PRO 56 119 119 PRO PRO B . n B 1 57 LEU 57 120 120 LEU LEU B . n B 1 58 PRO 58 121 121 PRO PRO B . n B 1 59 PHE 59 122 122 PHE PHE B . n B 1 60 SER 60 123 123 SER SER B . n B 1 61 GLN 61 124 124 GLN GLN B . n B 1 62 LEU 62 125 125 LEU LEU B . n B 1 63 VAL 63 126 126 VAL VAL B . n B 1 64 SER 64 127 127 SER SER B . n B 1 65 TRP 65 128 128 TRP TRP B . n B 1 66 ILE 66 129 129 ILE ILE B . n B 1 67 ALA 67 130 130 ALA ALA B . n B 1 68 TYR 68 131 131 TYR TYR B . n B 1 69 LEU 69 132 132 LEU LEU B . n B 1 70 GLN 70 133 133 GLN GLN B . n B 1 71 GLU 71 134 134 GLU GLU B . n B 1 72 ARG 72 135 135 ARG ARG B . n B 1 73 GLN 73 136 136 GLN GLN B . n B 1 74 GLY 74 137 137 GLY GLY B . n B 1 75 VAL 75 138 138 VAL VAL B . n B 1 76 SER 76 139 139 SER SER B . n B 1 77 VAL 77 140 140 VAL VAL B . n B 1 78 ASP 78 141 141 ASP ASP B . n B 1 79 ALA 79 142 142 ALA ALA B . n B 1 80 ILE 80 143 143 ILE ILE B . n B 1 81 ASP 81 144 144 ASP ASP B . n B 1 82 ILE 82 145 145 ILE ILE B . n B 1 83 ASP 83 146 146 ASP ASP B . n B 1 84 ARG 84 147 147 ARG ARG B . n B 1 85 GLY 85 148 148 GLY GLY B . n B 1 86 LYS 86 149 ? ? ? B . n B 1 87 VAL 87 150 ? ? ? B . n B 1 88 ASN 88 151 ? ? ? B . n B 1 89 GLY 89 152 ? ? ? B . n B 1 90 VAL 90 153 153 VAL VAL B . n B 1 91 VAL 91 154 154 VAL VAL B . n B 1 92 GLU 92 155 155 GLU GLU B . n B 1 93 VAL 93 156 156 VAL VAL B . n B 1 94 LYS 94 157 157 LYS LYS B . n B 1 95 ARG 95 158 158 ARG ARG B . n B 1 96 LEU 96 159 159 LEU LEU B . n B 1 97 GLN 97 160 160 GLN GLN B . n B 1 98 LEU 98 161 161 LEU LEU B . n B 1 99 LYS 99 162 162 LYS LYS B . n B 1 100 ARG 100 163 163 ARG ARG B . n B 1 101 GLY 101 164 ? ? ? B . n B 1 102 GLY 102 165 ? ? ? B . n B 1 103 LEU 103 166 ? ? ? B . n B 1 104 GLU 104 167 ? ? ? B . n B 1 105 HIS 105 168 ? ? ? B . n B 1 106 HIS 106 169 ? ? ? B . n B 1 107 HIS 107 170 ? ? ? B . n B 1 108 HIS 108 171 ? ? ? B . n B 1 109 HIS 109 172 ? ? ? B . n B 1 110 HIS 110 173 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 2001 2001 HOH HOH A . C 2 HOH 2 2002 2002 HOH HOH A . C 2 HOH 3 2003 2003 HOH HOH A . C 2 HOH 4 2004 2004 HOH HOH A . C 2 HOH 5 2005 2005 HOH HOH A . C 2 HOH 6 2006 2006 HOH HOH A . C 2 HOH 7 2007 2007 HOH HOH A . C 2 HOH 8 2008 2008 HOH HOH A . C 2 HOH 9 2009 2009 HOH HOH A . C 2 HOH 10 2010 2010 HOH HOH A . C 2 HOH 11 2011 2011 HOH HOH A . C 2 HOH 12 2012 2012 HOH HOH A . C 2 HOH 13 2013 2013 HOH HOH A . C 2 HOH 14 2014 2014 HOH HOH A . C 2 HOH 15 2015 2015 HOH HOH A . C 2 HOH 16 2016 2016 HOH HOH A . C 2 HOH 17 2017 2017 HOH HOH A . C 2 HOH 18 2018 2018 HOH HOH A . C 2 HOH 19 2019 2019 HOH HOH A . C 2 HOH 20 2020 2020 HOH HOH A . C 2 HOH 21 2021 2021 HOH HOH A . C 2 HOH 22 2022 2022 HOH HOH A . C 2 HOH 23 2023 2023 HOH HOH A . C 2 HOH 24 2024 2024 HOH HOH A . C 2 HOH 25 2025 2025 HOH HOH A . C 2 HOH 26 2026 2026 HOH HOH A . C 2 HOH 27 2027 2027 HOH HOH A . C 2 HOH 28 2028 2028 HOH HOH A . C 2 HOH 29 2029 2029 HOH HOH A . C 2 HOH 30 2030 2030 HOH HOH A . C 2 HOH 31 2031 2031 HOH HOH A . C 2 HOH 32 2032 2032 HOH HOH A . C 2 HOH 33 2033 2033 HOH HOH A . C 2 HOH 34 2034 2034 HOH HOH A . C 2 HOH 35 2035 2035 HOH HOH A . D 2 HOH 1 2001 2001 HOH HOH B . D 2 HOH 2 2002 2002 HOH HOH B . D 2 HOH 3 2003 2003 HOH HOH B . D 2 HOH 4 2004 2004 HOH HOH B . D 2 HOH 5 2005 2005 HOH HOH B . D 2 HOH 6 2006 2006 HOH HOH B . D 2 HOH 7 2007 2007 HOH HOH B . D 2 HOH 8 2008 2008 HOH HOH B . D 2 HOH 9 2009 2009 HOH HOH B . D 2 HOH 10 2010 2010 HOH HOH B . D 2 HOH 11 2011 2011 HOH HOH B . D 2 HOH 12 2012 2012 HOH HOH B . D 2 HOH 13 2013 2013 HOH HOH B . D 2 HOH 14 2014 2014 HOH HOH B . D 2 HOH 15 2015 2015 HOH HOH B . D 2 HOH 16 2016 2016 HOH HOH B . D 2 HOH 17 2017 2017 HOH HOH B . D 2 HOH 18 2018 2018 HOH HOH B . D 2 HOH 19 2019 2019 HOH HOH B . D 2 HOH 20 2020 2020 HOH HOH B . D 2 HOH 21 2021 2021 HOH HOH B . D 2 HOH 22 2022 2022 HOH HOH B . D 2 HOH 23 2023 2023 HOH HOH B . D 2 HOH 24 2024 2024 HOH HOH B . D 2 HOH 25 2025 2025 HOH HOH B . D 2 HOH 26 2026 2026 HOH HOH B . D 2 HOH 27 2027 2027 HOH HOH B . D 2 HOH 28 2028 2028 HOH HOH B . D 2 HOH 29 2029 2029 HOH HOH B . D 2 HOH 30 2030 2030 HOH HOH B . D 2 HOH 31 2031 2031 HOH HOH B . D 2 HOH 32 2032 2032 HOH HOH B . D 2 HOH 33 2033 2033 HOH HOH B . D 2 HOH 34 2034 2034 HOH HOH B . D 2 HOH 35 2035 2035 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 49 A MSE 112 ? MET SELENOMETHIONINE 2 A MSE 50 A MSE 113 ? MET SELENOMETHIONINE 3 B MSE 49 B MSE 112 ? MET SELENOMETHIONINE 4 B MSE 50 B MSE 113 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-04-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Experimental preparation' 6 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 3 'Structure model' pdbx_database_proc 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.temp' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 28.0100 24.9603 16.6642 0.0397 0.1242 0.1248 0.0049 0.0376 0.0229 5.2373 5.4339 7.0751 0.8850 -2.6984 2.9832 -0.0268 -0.1002 0.3289 0.0729 -0.0585 0.6217 0.0438 -0.4346 0.0853 'X-RAY DIFFRACTION' 2 ? refined 42.3567 31.4674 1.2700 0.1114 0.0722 0.0229 -0.0779 0.0383 -0.0136 5.4177 6.4544 5.6229 3.3734 0.3636 -2.3003 -0.2942 0.3392 0.0964 -0.3422 0.2726 -0.0987 -0.3054 0.3389 0.0216 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 86 ? ? A 165 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 86 ? ? B 163 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_entry_details.entry_id 1UV7 _pdbx_entry_details.compound_details ;REQUIRED FOR SECRETION OF CHOLERA TOXIN THROUGH THE OUTER MEMBRANE. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;RESIDUES 166 TO 173 IN THE SEQRES RECORDS GIVEN BELOW ARE FROM THE HIS-TAG USED FOR THE EXPRESSION OF THE PROTEIN. RESIDUE 64 IS THE INITIAL EXPRESSION METHIONINE RESIDUE. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 2024 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2030 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.06 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLY _pdbx_validate_rmsd_bond.auth_seq_id_1 110 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CA _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLY _pdbx_validate_rmsd_bond.auth_seq_id_2 110 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.586 _pdbx_validate_rmsd_bond.bond_target_value 1.456 _pdbx_validate_rmsd_bond.bond_deviation 0.130 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.015 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 141 ? ? CG A ASP 141 ? ? OD1 A ASP 141 ? ? 124.08 118.30 5.78 0.90 N 2 1 CB A ASP 144 ? ? CG A ASP 144 ? ? OD2 A ASP 144 ? ? 123.92 118.30 5.62 0.90 N 3 1 CB B ASP 141 ? ? CG B ASP 141 ? ? OD2 B ASP 141 ? ? 124.52 118.30 6.22 0.90 N 4 1 CB B ASP 146 ? ? CG B ASP 146 ? ? OD2 B ASP 146 ? ? 123.79 118.30 5.49 0.90 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 64 ? A MSE 1 2 1 Y 1 A SER 65 ? A SER 2 3 1 Y 1 A GLU 66 ? A GLU 3 4 1 Y 1 A ASN 67 ? A ASN 4 5 1 Y 1 A ALA 68 ? A ALA 5 6 1 Y 1 A ASN 69 ? A ASN 6 7 1 Y 1 A ASP 70 ? A ASP 7 8 1 Y 1 A ILE 71 ? A ILE 8 9 1 Y 1 A VAL 72 ? A VAL 9 10 1 Y 1 A THR 73 ? A THR 10 11 1 Y 1 A LEU 74 ? A LEU 11 12 1 Y 1 A ARG 75 ? A ARG 12 13 1 Y 1 A ALA 76 ? A ALA 13 14 1 Y 1 A GLN 77 ? A GLN 14 15 1 Y 1 A GLY 78 ? A GLY 15 16 1 Y 1 A GLY 79 ? A GLY 16 17 1 Y 1 A SER 80 ? A SER 17 18 1 Y 1 A ASP 81 ? A ASP 18 19 1 Y 1 A ALA 82 ? A ALA 19 20 1 Y 1 A PRO 83 ? A PRO 20 21 1 Y 1 A SER 84 ? A SER 21 22 1 Y 1 A ASP 85 ? A ASP 22 23 1 Y 1 A LYS 149 ? A LYS 86 24 1 Y 1 A VAL 150 ? A VAL 87 25 1 Y 1 A ASN 151 ? A ASN 88 26 1 Y 1 A GLY 152 ? A GLY 89 27 1 Y 1 A LEU 166 ? A LEU 103 28 1 Y 1 A GLU 167 ? A GLU 104 29 1 Y 1 A HIS 168 ? A HIS 105 30 1 Y 1 A HIS 169 ? A HIS 106 31 1 Y 1 A HIS 170 ? A HIS 107 32 1 Y 1 A HIS 171 ? A HIS 108 33 1 Y 1 A HIS 172 ? A HIS 109 34 1 Y 1 A HIS 173 ? A HIS 110 35 1 Y 1 B MSE 64 ? B MSE 1 36 1 Y 1 B SER 65 ? B SER 2 37 1 Y 1 B GLU 66 ? B GLU 3 38 1 Y 1 B ASN 67 ? B ASN 4 39 1 Y 1 B ALA 68 ? B ALA 5 40 1 Y 1 B ASN 69 ? B ASN 6 41 1 Y 1 B ASP 70 ? B ASP 7 42 1 Y 1 B ILE 71 ? B ILE 8 43 1 Y 1 B VAL 72 ? B VAL 9 44 1 Y 1 B THR 73 ? B THR 10 45 1 Y 1 B LEU 74 ? B LEU 11 46 1 Y 1 B ARG 75 ? B ARG 12 47 1 Y 1 B ALA 76 ? B ALA 13 48 1 Y 1 B GLN 77 ? B GLN 14 49 1 Y 1 B GLY 78 ? B GLY 15 50 1 Y 1 B GLY 79 ? B GLY 16 51 1 Y 1 B SER 80 ? B SER 17 52 1 Y 1 B ASP 81 ? B ASP 18 53 1 Y 1 B ALA 82 ? B ALA 19 54 1 Y 1 B PRO 83 ? B PRO 20 55 1 Y 1 B SER 84 ? B SER 21 56 1 Y 1 B ASP 85 ? B ASP 22 57 1 Y 1 B LYS 149 ? B LYS 86 58 1 Y 1 B VAL 150 ? B VAL 87 59 1 Y 1 B ASN 151 ? B ASN 88 60 1 Y 1 B GLY 152 ? B GLY 89 61 1 Y 1 B GLY 164 ? B GLY 101 62 1 Y 1 B GLY 165 ? B GLY 102 63 1 Y 1 B LEU 166 ? B LEU 103 64 1 Y 1 B GLU 167 ? B GLU 104 65 1 Y 1 B HIS 168 ? B HIS 105 66 1 Y 1 B HIS 169 ? B HIS 106 67 1 Y 1 B HIS 170 ? B HIS 107 68 1 Y 1 B HIS 171 ? B HIS 108 69 1 Y 1 B HIS 172 ? B HIS 109 70 1 Y 1 B HIS 173 ? B HIS 110 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #