data_1VC5 # _entry.id 1VC5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VC5 pdb_00001vc5 10.2210/pdb1vc5/pdb NDB PR0119 ? ? RCSB RCSB006452 ? ? WWPDB D_1000006452 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-18 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 4 'Structure model' struct_site 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VC5 _pdbx_database_status.recvd_initial_deposition_date 2004-03-04 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1DRZ 'cleaved HDV ribozyme' unspecified PDB 1CX0 'cleaved HDV ribozyme' unspecified PDB 1VBX 'the same protein/RNA(C75U) complex in EDTA solution' unspecified PDB 1VBY 'the same protein/RNA(C75U) complex and Mn2+ bound' unspecified PDB 1VBZ 'the same protein/RNA(C75U) complex in Ba2+ solution' unspecified PDB 1VC0 'the same protein/RNA(C75U) complex in Imidazole and Sr2+ solutions' unspecified PDB 1SJF 'the same protein/RNA(C75U) complex in Cobalt Hexammine solution' unspecified PDB 1VC6 'the same protein/RNA(C75U) complex in Imidazole and Mg2+ solutions' unspecified PDB 1VC7 'the same protein/RNA(C75U) complex in Sr2+ solution' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ke, A.' 1 'Zhou, K.' 2 'Ding, F.' 3 'Cate, J.H.D.' 4 'Doudna, J.A.' 5 # _citation.id primary _citation.title 'A Conformational Switch controls hepatitis delta virus ribozyme catalysis' _citation.journal_abbrev NATURE _citation.journal_volume 429 _citation.page_first 201 _citation.page_last 205 _citation.year 2004 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15141216 _citation.pdbx_database_id_DOI 10.1038/nature02522 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ke, A.' 1 ? primary 'Zhou, K.' 2 ? primary 'Ding, F.' 3 ? primary 'Cate, J.H.D.' 4 ? primary 'Doudna, J.A.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Hepatitis Delta virus ribozyme' 24466.537 1 ? ? ? ? 2 polymer man 'U1 small nuclear ribonucleoprotein A' 11498.472 1 ? Y31H/Q36R 'U1A_RBD(residues 1-100)' ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'U1 snRNP protein A, U1A protein, U1-A' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGACU GAUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGACU B ? 2 'polypeptide(L)' no no ;MAVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMKGT ; ;MAVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMKGT ; A ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 U n 1 4 G n 1 5 G n 1 6 C n 1 7 C n 1 8 G n 1 9 G n 1 10 C n 1 11 A n 1 12 U n 1 13 G n 1 14 G n 1 15 U n 1 16 C n 1 17 C n 1 18 C n 1 19 A n 1 20 G n 1 21 C n 1 22 C n 1 23 U n 1 24 C n 1 25 C n 1 26 U n 1 27 C n 1 28 G n 1 29 C n 1 30 U n 1 31 G n 1 32 G n 1 33 C n 1 34 G n 1 35 C n 1 36 C n 1 37 G n 1 38 G n 1 39 C n 1 40 U n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 A n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 A n 1 52 U n 1 53 U n 1 54 G n 1 55 C n 1 56 A n 1 57 C n 1 58 U n 1 59 C n 1 60 C n 1 61 G n 1 62 G n 1 63 U n 1 64 G n 1 65 G n 1 66 C n 1 67 G n 1 68 A n 1 69 A n 1 70 U n 1 71 G n 1 72 G n 1 73 G n 1 74 A n 1 75 C n 1 76 U n 2 1 MET n 2 2 ALA n 2 3 VAL n 2 4 PRO n 2 5 GLU n 2 6 THR n 2 7 ARG n 2 8 PRO n 2 9 ASN n 2 10 HIS n 2 11 THR n 2 12 ILE n 2 13 TYR n 2 14 ILE n 2 15 ASN n 2 16 ASN n 2 17 LEU n 2 18 ASN n 2 19 GLU n 2 20 LYS n 2 21 ILE n 2 22 LYS n 2 23 LYS n 2 24 ASP n 2 25 GLU n 2 26 LEU n 2 27 LYS n 2 28 LYS n 2 29 SER n 2 30 LEU n 2 31 HIS n 2 32 ALA n 2 33 ILE n 2 34 PHE n 2 35 SER n 2 36 ARG n 2 37 PHE n 2 38 GLY n 2 39 GLN n 2 40 ILE n 2 41 LEU n 2 42 ASP n 2 43 ILE n 2 44 LEU n 2 45 VAL n 2 46 SER n 2 47 ARG n 2 48 SER n 2 49 LEU n 2 50 LYS n 2 51 MET n 2 52 ARG n 2 53 GLY n 2 54 GLN n 2 55 ALA n 2 56 PHE n 2 57 VAL n 2 58 ILE n 2 59 PHE n 2 60 LYS n 2 61 GLU n 2 62 VAL n 2 63 SER n 2 64 SER n 2 65 ALA n 2 66 THR n 2 67 ASN n 2 68 ALA n 2 69 LEU n 2 70 ARG n 2 71 SER n 2 72 MET n 2 73 GLN n 2 74 GLY n 2 75 PHE n 2 76 PRO n 2 77 PHE n 2 78 TYR n 2 79 ASP n 2 80 LYS n 2 81 PRO n 2 82 MET n 2 83 ARG n 2 84 ILE n 2 85 GLN n 2 86 TYR n 2 87 ALA n 2 88 LYS n 2 89 THR n 2 90 ASP n 2 91 SER n 2 92 ASP n 2 93 ILE n 2 94 ILE n 2 95 ALA n 2 96 LYS n 2 97 MET n 2 98 LYS n 2 99 GLY n 2 100 THR n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pETR _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA occurs from Hapatitis Delta Virus pathogen, in vitro transcription with pUc19' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 98 ? ? ? B . n A 1 2 A 2 99 ? ? ? B . n A 1 3 U 3 100 ? ? ? B . n A 1 4 G 4 101 101 G G B . n A 1 5 G 5 102 102 G G B . n A 1 6 C 6 103 103 C C B . n A 1 7 C 7 104 104 C C B . n A 1 8 G 8 105 105 G G B . n A 1 9 G 9 106 106 G G B . n A 1 10 C 10 107 107 C C B . n A 1 11 A 11 108 108 A A B . n A 1 12 U 12 109 109 U U B . n A 1 13 G 13 110 110 G G B . n A 1 14 G 14 111 111 G G B . n A 1 15 U 15 112 112 U U B . n A 1 16 C 16 113 113 C C B . n A 1 17 C 17 114 114 C C B . n A 1 18 C 18 115 115 C C B . n A 1 19 A 19 116 116 A A B . n A 1 20 G 20 117 117 G G B . n A 1 21 C 21 118 118 C C B . n A 1 22 C 22 119 119 C C B . n A 1 23 U 23 120 120 U U B . n A 1 24 C 24 121 121 C C B . n A 1 25 C 25 122 122 C C B . n A 1 26 U 26 123 123 U U B . n A 1 27 C 27 124 124 C C B . n A 1 28 G 28 125 ? ? ? B . n A 1 29 C 29 126 ? ? ? B . n A 1 30 U 30 127 127 U U B . n A 1 31 G 31 128 128 G G B . n A 1 32 G 32 129 129 G G B . n A 1 33 C 33 130 130 C C B . n A 1 34 G 34 131 131 G G B . n A 1 35 C 35 132 132 C C B . n A 1 36 C 36 133 133 C C B . n A 1 37 G 37 134 134 G G B . n A 1 38 G 38 135 135 G G B . n A 1 39 C 39 136 136 C C B . n A 1 40 U 40 137 137 U U B . n A 1 41 G 41 138 138 G G B . n A 1 42 G 42 139 139 G G B . n A 1 43 G 43 140 140 G G B . n A 1 44 C 44 141 141 C C B . n A 1 45 A 45 142 142 A A B . n A 1 46 A 46 143 143 A A B . n A 1 47 C 47 144 144 C C B . n A 1 48 A 48 145 145 A A B . n A 1 49 C 49 146 146 C C B . n A 1 50 C 50 147 147 C C B . n A 1 51 A 51 148 148 A A B . n A 1 52 U 52 149 149 U U B . n A 1 53 U 53 150 150 U U B . n A 1 54 G 54 151 151 G G B . n A 1 55 C 55 152 152 C C B . n A 1 56 A 56 153 153 A A B . n A 1 57 C 57 154 154 C C B . n A 1 58 U 58 155 155 U U B . n A 1 59 C 59 156 156 C C B . n A 1 60 C 60 157 157 C C B . n A 1 61 G 61 158 158 G G B . n A 1 62 G 62 159 159 G G B . n A 1 63 U 63 160 160 U U B . n A 1 64 G 64 161 161 G G B . n A 1 65 G 65 162 162 G G B . n A 1 66 C 66 163 163 C C B . n A 1 67 G 67 164 164 G G B . n A 1 68 A 68 165 165 A A B . n A 1 69 A 69 166 166 A A B . n A 1 70 U 70 167 167 U U B . n A 1 71 G 71 168 168 G G B . n A 1 72 G 72 169 169 G G B . n A 1 73 G 73 170 170 G G B . n A 1 74 A 74 171 171 A A B . n A 1 75 C 75 172 172 C C B . n A 1 76 U 76 173 ? ? ? B . n B 2 1 MET 1 1 ? ? ? A . n B 2 2 ALA 2 2 ? ? ? A . n B 2 3 VAL 3 3 ? ? ? A . n B 2 4 PRO 4 4 4 PRO PRO A . n B 2 5 GLU 5 5 5 GLU ALA A . n B 2 6 THR 6 6 6 THR THR A . n B 2 7 ARG 7 7 7 ARG ARG A . n B 2 8 PRO 8 8 8 PRO PRO A . n B 2 9 ASN 9 9 9 ASN ASN A . n B 2 10 HIS 10 10 10 HIS HIS A . n B 2 11 THR 11 11 11 THR THR A . n B 2 12 ILE 12 12 12 ILE ILE A . n B 2 13 TYR 13 13 13 TYR TYR A . n B 2 14 ILE 14 14 14 ILE ILE A . n B 2 15 ASN 15 15 15 ASN ASN A . n B 2 16 ASN 16 16 16 ASN ASN A . n B 2 17 LEU 17 17 17 LEU LEU A . n B 2 18 ASN 18 18 18 ASN ASN A . n B 2 19 GLU 19 19 19 GLU GLU A . n B 2 20 LYS 20 20 20 LYS ALA A . n B 2 21 ILE 21 21 21 ILE ILE A . n B 2 22 LYS 22 22 22 LYS LYS A . n B 2 23 LYS 23 23 23 LYS LYS A . n B 2 24 ASP 24 24 24 ASP ASP A . n B 2 25 GLU 25 25 25 GLU GLU A . n B 2 26 LEU 26 26 26 LEU LEU A . n B 2 27 LYS 27 27 27 LYS LYS A . n B 2 28 LYS 28 28 28 LYS LYS A . n B 2 29 SER 29 29 29 SER SER A . n B 2 30 LEU 30 30 30 LEU LEU A . n B 2 31 HIS 31 31 31 HIS HIS A . n B 2 32 ALA 32 32 32 ALA ALA A . n B 2 33 ILE 33 33 33 ILE ILE A . n B 2 34 PHE 34 34 34 PHE PHE A . n B 2 35 SER 35 35 35 SER SER A . n B 2 36 ARG 36 36 36 ARG ARG A . n B 2 37 PHE 37 37 37 PHE PHE A . n B 2 38 GLY 38 38 38 GLY GLY A . n B 2 39 GLN 39 39 39 GLN GLN A . n B 2 40 ILE 40 40 40 ILE ILE A . n B 2 41 LEU 41 41 41 LEU LEU A . n B 2 42 ASP 42 42 42 ASP ASP A . n B 2 43 ILE 43 43 43 ILE ILE A . n B 2 44 LEU 44 44 44 LEU LEU A . n B 2 45 VAL 45 45 45 VAL VAL A . n B 2 46 SER 46 46 46 SER SER A . n B 2 47 ARG 47 47 47 ARG ARG A . n B 2 48 SER 48 48 48 SER SER A . n B 2 49 LEU 49 49 49 LEU LEU A . n B 2 50 LYS 50 50 50 LYS LYS A . n B 2 51 MET 51 51 51 MET MET A . n B 2 52 ARG 52 52 52 ARG ARG A . n B 2 53 GLY 53 53 53 GLY GLY A . n B 2 54 GLN 54 54 54 GLN GLN A . n B 2 55 ALA 55 55 55 ALA ALA A . n B 2 56 PHE 56 56 56 PHE PHE A . n B 2 57 VAL 57 57 57 VAL VAL A . n B 2 58 ILE 58 58 58 ILE ILE A . n B 2 59 PHE 59 59 59 PHE PHE A . n B 2 60 LYS 60 60 60 LYS LYS A . n B 2 61 GLU 61 61 61 GLU GLU A . n B 2 62 VAL 62 62 62 VAL VAL A . n B 2 63 SER 63 63 63 SER SER A . n B 2 64 SER 64 64 64 SER SER A . n B 2 65 ALA 65 65 65 ALA ALA A . n B 2 66 THR 66 66 66 THR THR A . n B 2 67 ASN 67 67 67 ASN ASN A . n B 2 68 ALA 68 68 68 ALA ALA A . n B 2 69 LEU 69 69 69 LEU LEU A . n B 2 70 ARG 70 70 70 ARG ARG A . n B 2 71 SER 71 71 71 SER SER A . n B 2 72 MET 72 72 72 MET MET A . n B 2 73 GLN 73 73 73 GLN GLN A . n B 2 74 GLY 74 74 74 GLY GLY A . n B 2 75 PHE 75 75 75 PHE PHE A . n B 2 76 PRO 76 76 76 PRO PRO A . n B 2 77 PHE 77 77 77 PHE PHE A . n B 2 78 TYR 78 78 78 TYR TYR A . n B 2 79 ASP 79 79 79 ASP ALA A . n B 2 80 LYS 80 80 80 LYS LYS A . n B 2 81 PRO 81 81 81 PRO PRO A . n B 2 82 MET 82 82 82 MET MET A . n B 2 83 ARG 83 83 83 ARG ARG A . n B 2 84 ILE 84 84 84 ILE ILE A . n B 2 85 GLN 85 85 85 GLN GLN A . n B 2 86 TYR 86 86 86 TYR TYR A . n B 2 87 ALA 87 87 87 ALA ALA A . n B 2 88 LYS 88 88 88 LYS LYS A . n B 2 89 THR 89 89 89 THR THR A . n B 2 90 ASP 90 90 90 ASP ASP A . n B 2 91 SER 91 91 91 SER SER A . n B 2 92 ASP 92 92 92 ASP ASP A . n B 2 93 ILE 93 93 93 ILE ILE A . n B 2 94 ILE 94 94 94 ILE ILE A . n B 2 95 ALA 95 95 95 ALA ALA A . n B 2 96 LYS 96 96 96 LYS LYS A . n B 2 97 MET 97 97 97 MET MET A . n B 2 98 LYS 98 98 98 LYS ALA A . n B 2 99 GLY 99 99 ? ? ? A . n B 2 100 THR 100 100 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA 1 201 201 NA NA B . D 3 NA 1 202 202 NA NA B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B U 127 ? P ? A U 30 P 2 1 Y 1 B U 127 ? OP1 ? A U 30 OP1 3 1 Y 1 B U 127 ? OP2 ? A U 30 OP2 4 1 Y 1 A GLU 5 ? CG ? B GLU 5 CG 5 1 Y 1 A GLU 5 ? CD ? B GLU 5 CD 6 1 Y 1 A GLU 5 ? OE1 ? B GLU 5 OE1 7 1 Y 1 A GLU 5 ? OE2 ? B GLU 5 OE2 8 1 Y 1 A LYS 20 ? CG ? B LYS 20 CG 9 1 Y 1 A LYS 20 ? CD ? B LYS 20 CD 10 1 Y 1 A LYS 20 ? CE ? B LYS 20 CE 11 1 Y 1 A LYS 20 ? NZ ? B LYS 20 NZ 12 1 Y 1 A ASP 79 ? CG ? B ASP 79 CG 13 1 Y 1 A ASP 79 ? OD1 ? B ASP 79 OD1 14 1 Y 1 A ASP 79 ? OD2 ? B ASP 79 OD2 15 1 Y 1 A LYS 98 ? CG ? B LYS 98 CG 16 1 Y 1 A LYS 98 ? CD ? B LYS 98 CD 17 1 Y 1 A LYS 98 ? CE ? B LYS 98 CE 18 1 Y 1 A LYS 98 ? NZ ? B LYS 98 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.19 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 1VC5 _cell.length_a 109.488 _cell.length_b 109.488 _cell.length_c 187.580 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VC5 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # _exptl.entry_id 1VC5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.43 _exptl_crystal.density_percent_sol 63.91 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'EDTA, NaCl, MPD, Sodium Cacodylate, Spermine-HCl, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 EDTA ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 MPD ? ? ? 1 4 1 'Sodium Cacodylate' ? ? ? 1 5 1 Spermine-HCl ? ? ? 1 6 2 EDTA ? ? ? 1 7 2 NaCl ? ? ? 1 8 2 MPD ? ? ? 1 9 2 'Sodium Cacodylate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-03-30 _diffrn_detector.details graphite # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0781 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0781 # _reflns.entry_id 1VC5 _reflns.observed_criterion_sigma_F 1.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 3.4 _reflns.d_resolution_low 80 _reflns.number_all 6744 _reflns.number_obs 6322 _reflns.percent_possible_obs 93.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.4 _reflns_shell.d_res_low 3.486 _reflns_shell.percent_possible_all 81.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1VC5 _refine.ls_number_reflns_obs 5636 _refine.ls_number_reflns_all 6744 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 3.40 _refine.ls_percent_reflns_obs 96.96 _refine.ls_R_factor_obs 0.30601 _refine.ls_R_factor_all 0.31 _refine.ls_R_factor_R_work 0.30486 _refine.ls_R_factor_R_free 0.32706 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.4 _refine.ls_number_reflns_R_free 322 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.881 _refine.correlation_coeff_Fo_to_Fc_free 0.808 _refine.B_iso_mean 40.392 _refine.aniso_B[1][1] -2.34 _refine.aniso_B[2][2] -2.34 _refine.aniso_B[3][3] 3.51 _refine.aniso_B[1][2] -1.17 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.723 _refine.overall_SU_ML 0.708 _refine.overall_SU_B 44.423 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VC5 _refine_analyze.Luzzati_coordinate_error_obs 0.71 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 759 _refine_hist.pdbx_number_atoms_nucleic_acid 1489 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2250 _refine_hist.d_res_high 3.40 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.021 ? 2435 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.937 2.701 ? 3623 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 2.815 5.000 ? 94 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.046 0.200 ? 396 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.001 0.020 ? 1286 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.129 0.200 ? 870 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.101 0.200 ? 60 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.469 0.200 ? 94 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.686 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.632 1.500 ? 476 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 6.310 2.000 ? 767 'X-RAY DIFFRACTION' ? r_scbond_it 7.120 3.000 ? 1959 'X-RAY DIFFRACTION' ? r_scangle_it 10.322 4.500 ? 2856 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.400 _refine_ls_shell.d_res_low 3.486 _refine_ls_shell.number_reflns_R_work 351 _refine_ls_shell.R_factor_R_work 0.349 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.26 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1VC5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VC5 _struct.title 'Crystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VC5 _struct_keywords.pdbx_keywords TRANSLATION/RNA _struct_keywords.text 'HDV, ribozyme, RNA, U1A, precursor, TRANSLATION-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SNRPA_HUMAN P09012 2 ;MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMKGT ; 1 ? 2 PDB 1VC5 1VC5 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VC5 A 1 ? 100 ? P09012 1 ? 100 ? 1 100 2 2 1VC5 B 1 ? 76 ? 1VC5 98 ? 173 ? 98 173 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VC5 HIS A 31 ? UNP P09012 TYR 31 'engineered mutation' 31 1 1 1VC5 ARG A 36 ? UNP P09012 GLN 36 'engineered mutation' 36 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS B 22 ? SER B 35 ? LYS A 22 SER A 35 1 ? 14 HELX_P HELX_P2 2 GLU B 61 ? GLN B 73 ? GLU A 61 GLN A 73 1 ? 13 HELX_P HELX_P3 3 SER B 91 ? LYS B 98 ? SER A 91 LYS A 98 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 4 N1 ? ? ? 1_555 A U 40 O2 ? ? B G 101 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 4 O6 ? ? ? 1_555 A U 40 N3 ? ? B G 101 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 39 N3 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog4 hydrog ? ? A G 5 N1 ? ? ? 1_555 A U 40 O2 ? ? B G 102 B U 137 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog5 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 38 N1 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 38 O6 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 38 N2 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 37 N1 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 37 O6 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 37 N2 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 36 N3 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 36 O2 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 36 N4 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 35 N3 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 35 O2 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 35 N4 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 34 N2 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog18 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 74 N1 ? ? B U 112 B A 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 74 N6 ? ? B U 112 B A 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 73 N1 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 73 O6 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 73 N2 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 72 N1 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 72 O6 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 72 N2 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 71 N1 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 71 O6 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 71 N2 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 19 N1 ? ? ? 1_555 A U 70 N3 ? ? B A 116 B U 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 19 N6 ? ? ? 1_555 A U 70 O4 ? ? B A 116 B U 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 33 N3 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 33 O2 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 33 N4 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 32 N1 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 32 O6 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 32 N2 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 31 N1 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 31 O6 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 31 N2 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 23 O2 ? ? ? 1_555 A C 27 N4 ? ? B U 120 B C 124 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog41 hydrog ? ? A U 23 O2 ? ? ? 1_555 A G 31 N2 ? ? B U 120 B G 128 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog42 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 42 N1 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 42 O6 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 42 N2 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 24 O2 ? ? ? 1_555 A A 45 N6 ? ? B C 121 B A 142 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog46 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 41 N1 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 41 O6 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 41 N2 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 32 N2 ? ? ? 1_555 A A 69 N3 ? ? B G 129 B A 166 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog50 hydrog ? ? A G 43 N2 ? ? ? 1_555 A G 65 O6 ? ? B G 140 B G 162 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog51 hydrog ? ? A C 44 O2 ? ? ? 1_555 A C 47 N4 ? ? B C 141 B C 144 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog52 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 64 N7 ? ? B C 141 B G 161 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog53 hydrog ? ? A A 46 N1 ? ? ? 1_555 A G 65 N1 ? ? B A 143 B G 162 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog54 hydrog ? ? A C 47 N3 ? ? ? 1_555 A G 64 N1 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 64 O6 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 64 N2 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A A 48 N1 ? ? ? 1_555 A U 63 N3 ? ? B A 145 B U 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 48 N6 ? ? ? 1_555 A U 63 O4 ? ? B A 145 B U 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 62 N1 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 62 O6 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 62 N2 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 61 N1 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 61 O6 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 61 N2 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 58 O2 ? ? ? 1_555 A C 60 N4 ? ? B U 155 B C 157 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE B 40 ? LEU B 44 ? ILE A 40 LEU A 44 A 2 ALA B 55 ? PHE B 59 ? ALA A 55 PHE A 59 A 3 THR B 11 ? ASN B 15 ? THR A 11 ASN A 15 A 4 ARG B 83 ? TYR B 86 ? ARG A 83 TYR A 86 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU B 44 ? N LEU A 44 O PHE B 56 ? O PHE A 56 A 2 3 O ALA B 55 ? O ALA A 55 N ILE B 14 ? N ILE A 14 A 3 4 N ASN B 15 ? N ASN A 15 O ARG B 83 ? O ARG A 83 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id NA _struct_site.pdbx_auth_seq_id 202 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE NA B 202' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id G _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 5 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id G _struct_site_gen.auth_asym_id B _struct_site_gen.auth_seq_id 102 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "O2'" B G 164 ? ? 1_555 N2 B G 164 ? ? 12_555 1.42 2 1 O6 B G 110 ? ? 1_555 N3 B C 157 ? ? 3_665 2.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 B C 163 ? ? N4 B C 163 ? ? 1.228 1.335 -0.107 0.009 N 2 1 N3 B C 163 ? ? C4 B C 163 ? ? 1.388 1.335 0.053 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B G 138 ? ? "O3'" B G 138 ? ? P B G 139 ? ? 127.68 119.70 7.98 1.20 Y 2 1 "C3'" B C 152 ? ? "O3'" B C 152 ? ? P B A 153 ? ? 129.06 119.70 9.36 1.20 Y 3 1 "C3'" B G 162 ? ? "O3'" B G 162 ? ? P B C 163 ? ? 128.67 119.70 8.97 1.20 Y 4 1 N1 B C 163 ? ? C2 B C 163 ? ? N3 B C 163 ? ? 114.67 119.20 -4.53 0.70 N 5 1 C2 B C 163 ? ? N3 B C 163 ? ? C4 B C 163 ? ? 127.03 119.90 7.13 0.50 N 6 1 N3 B C 163 ? ? C4 B C 163 ? ? C5 B C 163 ? ? 115.16 121.90 -6.74 0.40 N 7 1 N1 B C 163 ? ? C2 B C 163 ? ? O2 B C 163 ? ? 124.04 118.90 5.14 0.60 N 8 1 C5 B C 163 ? ? C4 B C 163 ? ? N4 B C 163 ? ? 125.16 120.20 4.96 0.70 N 9 1 "C3'" B C 163 ? ? "O3'" B C 163 ? ? P B G 164 ? ? 127.78 119.70 8.08 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 8 ? ? -48.77 103.90 2 1 SER A 35 ? ? -84.52 38.42 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 38.8639 -19.3284 57.3292 0.4783 0.0402 0.3032 -0.0787 0.1835 -0.0683 10.0424 10.4840 7.2111 -2.3842 -0.8032 0.0907 0.2800 -0.1306 -0.9151 -0.4155 -0.2960 -0.7296 0.5403 0.0099 0.0160 'X-RAY DIFFRACTION' 2 ? refined 34.4696 18.5583 42.2666 1.4899 0.7294 1.0424 0.0264 0.0788 -0.1231 2.0138 9.0146 0.0484 -1.8106 0.9093 -2.2474 -0.4611 -0.2494 1.1281 -0.5798 0.1708 -0.7482 -0.2629 -0.0262 0.2903 'X-RAY DIFFRACTION' 3 ? refined 39.7612 -0.9700 44.2455 0.8257 0.8257 0.8257 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 'X-RAY DIFFRACTION' 4 ? refined 49.7547 25.4501 36.1556 0.8257 0.8257 0.8257 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 B 4 4 B 98 98 ? A A 'X-RAY DIFFRACTION' ? 2 2 A 4 101 A 75 172 ? B B 'X-RAY DIFFRACTION' ? 3 3 C 1 201 C 1 201 ? B B 'X-RAY DIFFRACTION' ? 4 4 D 1 202 D 1 202 ? B B 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B G 98 ? A G 1 2 1 Y 1 B A 99 ? A A 2 3 1 Y 1 B U 100 ? A U 3 4 1 Y 1 B G 125 ? A G 28 5 1 Y 1 B C 126 ? A C 29 6 1 Y 1 B U 173 ? A U 76 7 1 Y 1 A MET 1 ? B MET 1 8 1 Y 1 A ALA 2 ? B ALA 2 9 1 Y 1 A VAL 3 ? B VAL 3 10 1 Y 1 A GLY 99 ? B GLY 99 11 1 Y 1 A THR 100 ? B THR 100 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 MET N N N N 323 MET CA C N S 324 MET C C N N 325 MET O O N N 326 MET CB C N N 327 MET CG C N N 328 MET SD S N N 329 MET CE C N N 330 MET OXT O N N 331 MET H H N N 332 MET H2 H N N 333 MET HA H N N 334 MET HB2 H N N 335 MET HB3 H N N 336 MET HG2 H N N 337 MET HG3 H N N 338 MET HE1 H N N 339 MET HE2 H N N 340 MET HE3 H N N 341 MET HXT H N N 342 NA NA NA N N 343 PHE N N N N 344 PHE CA C N S 345 PHE C C N N 346 PHE O O N N 347 PHE CB C N N 348 PHE CG C Y N 349 PHE CD1 C Y N 350 PHE CD2 C Y N 351 PHE CE1 C Y N 352 PHE CE2 C Y N 353 PHE CZ C Y N 354 PHE OXT O N N 355 PHE H H N N 356 PHE H2 H N N 357 PHE HA H N N 358 PHE HB2 H N N 359 PHE HB3 H N N 360 PHE HD1 H N N 361 PHE HD2 H N N 362 PHE HE1 H N N 363 PHE HE2 H N N 364 PHE HZ H N N 365 PHE HXT H N N 366 PRO N N N N 367 PRO CA C N S 368 PRO C C N N 369 PRO O O N N 370 PRO CB C N N 371 PRO CG C N N 372 PRO CD C N N 373 PRO OXT O N N 374 PRO H H N N 375 PRO HA H N N 376 PRO HB2 H N N 377 PRO HB3 H N N 378 PRO HG2 H N N 379 PRO HG3 H N N 380 PRO HD2 H N N 381 PRO HD3 H N N 382 PRO HXT H N N 383 SER N N N N 384 SER CA C N S 385 SER C C N N 386 SER O O N N 387 SER CB C N N 388 SER OG O N N 389 SER OXT O N N 390 SER H H N N 391 SER H2 H N N 392 SER HA H N N 393 SER HB2 H N N 394 SER HB3 H N N 395 SER HG H N N 396 SER HXT H N N 397 THR N N N N 398 THR CA C N S 399 THR C C N N 400 THR O O N N 401 THR CB C N R 402 THR OG1 O N N 403 THR CG2 C N N 404 THR OXT O N N 405 THR H H N N 406 THR H2 H N N 407 THR HA H N N 408 THR HB H N N 409 THR HG1 H N N 410 THR HG21 H N N 411 THR HG22 H N N 412 THR HG23 H N N 413 THR HXT H N N 414 TYR N N N N 415 TYR CA C N S 416 TYR C C N N 417 TYR O O N N 418 TYR CB C N N 419 TYR CG C Y N 420 TYR CD1 C Y N 421 TYR CD2 C Y N 422 TYR CE1 C Y N 423 TYR CE2 C Y N 424 TYR CZ C Y N 425 TYR OH O N N 426 TYR OXT O N N 427 TYR H H N N 428 TYR H2 H N N 429 TYR HA H N N 430 TYR HB2 H N N 431 TYR HB3 H N N 432 TYR HD1 H N N 433 TYR HD2 H N N 434 TYR HE1 H N N 435 TYR HE2 H N N 436 TYR HH H N N 437 TYR HXT H N N 438 U OP3 O N N 439 U P P N N 440 U OP1 O N N 441 U OP2 O N N 442 U "O5'" O N N 443 U "C5'" C N N 444 U "C4'" C N R 445 U "O4'" O N N 446 U "C3'" C N S 447 U "O3'" O N N 448 U "C2'" C N R 449 U "O2'" O N N 450 U "C1'" C N R 451 U N1 N N N 452 U C2 C N N 453 U O2 O N N 454 U N3 N N N 455 U C4 C N N 456 U O4 O N N 457 U C5 C N N 458 U C6 C N N 459 U HOP3 H N N 460 U HOP2 H N N 461 U "H5'" H N N 462 U "H5''" H N N 463 U "H4'" H N N 464 U "H3'" H N N 465 U "HO3'" H N N 466 U "H2'" H N N 467 U "HO2'" H N N 468 U "H1'" H N N 469 U H3 H N N 470 U H5 H N N 471 U H6 H N N 472 VAL N N N N 473 VAL CA C N S 474 VAL C C N N 475 VAL O O N N 476 VAL CB C N N 477 VAL CG1 C N N 478 VAL CG2 C N N 479 VAL OXT O N N 480 VAL H H N N 481 VAL H2 H N N 482 VAL HA H N N 483 VAL HB H N N 484 VAL HG11 H N N 485 VAL HG12 H N N 486 VAL HG13 H N N 487 VAL HG21 H N N 488 VAL HG22 H N N 489 VAL HG23 H N N 490 VAL HXT H N N 491 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 ILE N CA sing N N 252 ILE N H sing N N 253 ILE N H2 sing N N 254 ILE CA C sing N N 255 ILE CA CB sing N N 256 ILE CA HA sing N N 257 ILE C O doub N N 258 ILE C OXT sing N N 259 ILE CB CG1 sing N N 260 ILE CB CG2 sing N N 261 ILE CB HB sing N N 262 ILE CG1 CD1 sing N N 263 ILE CG1 HG12 sing N N 264 ILE CG1 HG13 sing N N 265 ILE CG2 HG21 sing N N 266 ILE CG2 HG22 sing N N 267 ILE CG2 HG23 sing N N 268 ILE CD1 HD11 sing N N 269 ILE CD1 HD12 sing N N 270 ILE CD1 HD13 sing N N 271 ILE OXT HXT sing N N 272 LEU N CA sing N N 273 LEU N H sing N N 274 LEU N H2 sing N N 275 LEU CA C sing N N 276 LEU CA CB sing N N 277 LEU CA HA sing N N 278 LEU C O doub N N 279 LEU C OXT sing N N 280 LEU CB CG sing N N 281 LEU CB HB2 sing N N 282 LEU CB HB3 sing N N 283 LEU CG CD1 sing N N 284 LEU CG CD2 sing N N 285 LEU CG HG sing N N 286 LEU CD1 HD11 sing N N 287 LEU CD1 HD12 sing N N 288 LEU CD1 HD13 sing N N 289 LEU CD2 HD21 sing N N 290 LEU CD2 HD22 sing N N 291 LEU CD2 HD23 sing N N 292 LEU OXT HXT sing N N 293 LYS N CA sing N N 294 LYS N H sing N N 295 LYS N H2 sing N N 296 LYS CA C sing N N 297 LYS CA CB sing N N 298 LYS CA HA sing N N 299 LYS C O doub N N 300 LYS C OXT sing N N 301 LYS CB CG sing N N 302 LYS CB HB2 sing N N 303 LYS CB HB3 sing N N 304 LYS CG CD sing N N 305 LYS CG HG2 sing N N 306 LYS CG HG3 sing N N 307 LYS CD CE sing N N 308 LYS CD HD2 sing N N 309 LYS CD HD3 sing N N 310 LYS CE NZ sing N N 311 LYS CE HE2 sing N N 312 LYS CE HE3 sing N N 313 LYS NZ HZ1 sing N N 314 LYS NZ HZ2 sing N N 315 LYS NZ HZ3 sing N N 316 LYS OXT HXT sing N N 317 MET N CA sing N N 318 MET N H sing N N 319 MET N H2 sing N N 320 MET CA C sing N N 321 MET CA CB sing N N 322 MET CA HA sing N N 323 MET C O doub N N 324 MET C OXT sing N N 325 MET CB CG sing N N 326 MET CB HB2 sing N N 327 MET CB HB3 sing N N 328 MET CG SD sing N N 329 MET CG HG2 sing N N 330 MET CG HG3 sing N N 331 MET SD CE sing N N 332 MET CE HE1 sing N N 333 MET CE HE2 sing N N 334 MET CE HE3 sing N N 335 MET OXT HXT sing N N 336 PHE N CA sing N N 337 PHE N H sing N N 338 PHE N H2 sing N N 339 PHE CA C sing N N 340 PHE CA CB sing N N 341 PHE CA HA sing N N 342 PHE C O doub N N 343 PHE C OXT sing N N 344 PHE CB CG sing N N 345 PHE CB HB2 sing N N 346 PHE CB HB3 sing N N 347 PHE CG CD1 doub Y N 348 PHE CG CD2 sing Y N 349 PHE CD1 CE1 sing Y N 350 PHE CD1 HD1 sing N N 351 PHE CD2 CE2 doub Y N 352 PHE CD2 HD2 sing N N 353 PHE CE1 CZ doub Y N 354 PHE CE1 HE1 sing N N 355 PHE CE2 CZ sing Y N 356 PHE CE2 HE2 sing N N 357 PHE CZ HZ sing N N 358 PHE OXT HXT sing N N 359 PRO N CA sing N N 360 PRO N CD sing N N 361 PRO N H sing N N 362 PRO CA C sing N N 363 PRO CA CB sing N N 364 PRO CA HA sing N N 365 PRO C O doub N N 366 PRO C OXT sing N N 367 PRO CB CG sing N N 368 PRO CB HB2 sing N N 369 PRO CB HB3 sing N N 370 PRO CG CD sing N N 371 PRO CG HG2 sing N N 372 PRO CG HG3 sing N N 373 PRO CD HD2 sing N N 374 PRO CD HD3 sing N N 375 PRO OXT HXT sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TYR N CA sing N N 406 TYR N H sing N N 407 TYR N H2 sing N N 408 TYR CA C sing N N 409 TYR CA CB sing N N 410 TYR CA HA sing N N 411 TYR C O doub N N 412 TYR C OXT sing N N 413 TYR CB CG sing N N 414 TYR CB HB2 sing N N 415 TYR CB HB3 sing N N 416 TYR CG CD1 doub Y N 417 TYR CG CD2 sing Y N 418 TYR CD1 CE1 sing Y N 419 TYR CD1 HD1 sing N N 420 TYR CD2 CE2 doub Y N 421 TYR CD2 HD2 sing N N 422 TYR CE1 CZ doub Y N 423 TYR CE1 HE1 sing N N 424 TYR CE2 CZ sing Y N 425 TYR CE2 HE2 sing N N 426 TYR CZ OH sing N N 427 TYR OH HH sing N N 428 TYR OXT HXT sing N N 429 U OP3 P sing N N 430 U OP3 HOP3 sing N N 431 U P OP1 doub N N 432 U P OP2 sing N N 433 U P "O5'" sing N N 434 U OP2 HOP2 sing N N 435 U "O5'" "C5'" sing N N 436 U "C5'" "C4'" sing N N 437 U "C5'" "H5'" sing N N 438 U "C5'" "H5''" sing N N 439 U "C4'" "O4'" sing N N 440 U "C4'" "C3'" sing N N 441 U "C4'" "H4'" sing N N 442 U "O4'" "C1'" sing N N 443 U "C3'" "O3'" sing N N 444 U "C3'" "C2'" sing N N 445 U "C3'" "H3'" sing N N 446 U "O3'" "HO3'" sing N N 447 U "C2'" "O2'" sing N N 448 U "C2'" "C1'" sing N N 449 U "C2'" "H2'" sing N N 450 U "O2'" "HO2'" sing N N 451 U "C1'" N1 sing N N 452 U "C1'" "H1'" sing N N 453 U N1 C2 sing N N 454 U N1 C6 sing N N 455 U C2 O2 doub N N 456 U C2 N3 sing N N 457 U N3 C4 sing N N 458 U N3 H3 sing N N 459 U C4 O4 doub N N 460 U C4 C5 sing N N 461 U C5 C6 doub N N 462 U C5 H5 sing N N 463 U C6 H6 sing N N 464 VAL N CA sing N N 465 VAL N H sing N N 466 VAL N H2 sing N N 467 VAL CA C sing N N 468 VAL CA CB sing N N 469 VAL CA HA sing N N 470 VAL C O doub N N 471 VAL C OXT sing N N 472 VAL CB CG1 sing N N 473 VAL CB CG2 sing N N 474 VAL CB HB sing N N 475 VAL CG1 HG11 sing N N 476 VAL CG1 HG12 sing N N 477 VAL CG1 HG13 sing N N 478 VAL CG2 HG21 sing N N 479 VAL CG2 HG22 sing N N 480 VAL CG2 HG23 sing N N 481 VAL OXT HXT sing N N 482 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1VC5 'double helix' 1VC5 'a-form double helix' 1VC5 'bulge loop' 1VC5 'mismatched base pair' 1VC5 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 34 1_555 A C 10 1_555 -0.091 0.250 -0.725 -10.219 -10.376 10.403 1 B_G131:C107_B B 131 ? B 107 ? ? 1 1 A C 35 1_555 A G 9 1_555 -0.291 -0.235 -0.941 14.117 -6.455 -2.072 2 B_C132:G106_B B 132 ? B 106 ? 19 1 1 A C 36 1_555 A G 8 1_555 -0.036 -0.083 -0.436 3.865 -4.191 2.003 3 B_C133:G105_B B 133 ? B 105 ? 19 1 1 A G 37 1_555 A C 7 1_555 -0.163 -0.063 -0.111 -3.944 -2.043 4.037 4 B_G134:C104_B B 134 ? B 104 ? 19 1 1 A G 38 1_555 A C 6 1_555 0.195 -0.167 -0.668 -3.461 4.123 -1.262 5 B_G135:C103_B B 135 ? B 103 ? 19 1 1 A C 39 1_555 A G 5 1_555 0.000 0.058 -1.376 -1.057 1.898 10.662 6 B_C136:G102_B B 136 ? B 102 ? ? 1 1 A U 40 1_555 A G 4 1_555 2.821 -0.197 -0.405 0.450 1.596 12.329 7 B_U137:G101_B B 137 ? B 101 ? 28 ? 1 A G 41 1_555 A C 25 1_555 -0.151 -0.018 -0.286 -11.841 -18.790 2.276 8 B_G138:C122_B B 138 ? B 122 ? 19 1 1 A G 42 1_555 A C 24 1_555 -0.061 -0.148 -0.435 -20.797 -30.097 -3.250 9 B_G139:C121_B B 139 ? B 121 ? 19 1 1 A A 46 1_555 A G 65 1_555 -1.021 1.666 -0.273 6.951 -29.174 -6.640 10 B_A143:G162_B B 143 ? B 162 ? ? 1 1 A C 47 1_555 A G 64 1_555 1.306 -0.010 -0.015 4.867 -22.185 0.688 11 B_C144:G161_B B 144 ? B 161 ? 19 1 1 A A 48 1_555 A U 63 1_555 -0.246 -0.130 -0.265 -4.935 -17.041 7.943 12 B_A145:U160_B B 145 ? B 160 ? 20 1 1 A C 49 1_555 A G 62 1_555 0.113 0.145 -0.645 10.785 -7.396 6.771 13 B_C146:G159_B B 146 ? B 159 ? 19 1 1 A C 50 1_555 A G 61 1_555 0.121 -0.209 -0.541 6.835 -17.082 2.027 14 B_C147:G158_B B 147 ? B 158 ? 19 1 1 A U 15 1_555 A A 74 1_555 0.041 0.037 -0.444 3.326 6.302 -7.711 15 B_U112:A171_B B 112 ? B 171 ? 20 1 1 A C 16 1_555 A G 73 1_555 -0.004 0.027 -0.069 0.012 -6.230 -7.675 16 B_C113:G170_B B 113 ? B 170 ? 19 1 1 A C 17 1_555 A G 72 1_555 0.042 0.130 -0.294 -7.881 -5.059 1.869 17 B_C114:G169_B B 114 ? B 169 ? 19 1 1 A C 18 1_555 A G 71 1_555 -0.607 -0.010 -0.101 -2.786 3.863 -11.593 18 B_C115:G168_B B 115 ? B 168 ? 19 1 1 A A 19 1_555 A U 70 1_555 -0.205 0.013 0.420 10.755 -9.773 8.761 19 B_A116:U167_B B 116 ? B 167 ? 20 1 1 A G 20 1_555 A C 33 1_555 0.041 -0.123 0.169 5.866 -13.501 -3.010 20 B_G117:C130_B B 117 ? B 130 ? 19 1 1 A C 21 1_555 A G 32 1_555 0.250 -0.073 0.078 6.480 -23.251 2.978 21 B_C118:G129_B B 118 ? B 129 ? 19 1 1 A C 22 1_555 A G 31 1_555 0.021 -0.128 0.346 -9.131 -19.139 -9.314 22 B_C119:G128_B B 119 ? B 128 ? 19 1 1 A U 23 1_555 A C 27 1_555 -0.726 0.547 0.433 -26.209 -57.011 -165.908 23 B_U120:C124_B B 120 ? B 124 ? ? ? 1 A U 58 1_555 A C 60 1_555 -4.668 0.434 -0.248 22.273 12.691 46.402 24 B_U155:C157_B B 155 ? B 157 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 34 1_555 A C 10 1_555 A C 35 1_555 A G 9 1_555 -1.395 -1.910 2.729 -1.200 0.939 24.601 -4.713 2.962 2.719 2.201 2.812 24.648 1 BB_G131C132:G106C107_BB B 131 ? B 107 ? B 132 ? B 106 ? 1 A C 35 1_555 A G 9 1_555 A C 36 1_555 A G 8 1_555 0.541 -1.692 3.442 -2.485 13.049 33.859 -4.462 -1.202 2.591 21.411 4.077 36.300 2 BB_C132C133:G105G106_BB B 132 ? B 106 ? B 133 ? B 105 ? 1 A C 36 1_555 A G 8 1_555 A G 37 1_555 A C 7 1_555 0.276 -1.917 3.512 -2.292 4.749 27.156 -5.188 -1.145 3.105 9.995 4.823 27.654 3 BB_C133G134:C104G105_BB B 133 ? B 105 ? B 134 ? B 104 ? 1 A G 37 1_555 A C 7 1_555 A G 38 1_555 A C 6 1_555 -0.334 -2.470 3.434 3.235 0.781 28.286 -5.205 1.443 3.308 1.591 -6.590 28.477 4 BB_G134G135:C103C104_BB B 134 ? B 104 ? B 135 ? B 103 ? 1 A G 38 1_555 A C 6 1_555 A C 39 1_555 A G 5 1_555 0.441 -2.365 3.472 5.170 -0.215 28.569 -4.668 0.345 3.513 -0.431 -10.369 29.024 5 BB_G135C136:G102C103_BB B 135 ? B 103 ? B 136 ? B 102 ? 1 A C 39 1_555 A G 5 1_555 A U 40 1_555 A G 4 1_555 0.997 -1.313 3.394 -1.538 10.497 40.100 -2.960 -1.571 2.936 14.993 2.197 41.424 6 BB_C136U137:G101G102_BB B 136 ? B 102 ? B 137 ? B 101 ? 1 A U 40 1_555 A G 4 1_555 A G 41 1_555 A C 25 1_555 -2.485 -3.006 3.558 2.788 10.185 6.430 -19.941 13.180 -1.181 56.663 -15.512 12.359 7 BB_U137G138:C122G101_BB B 137 ? B 101 ? B 138 ? B 122 ? 1 A G 41 1_555 A C 25 1_555 A G 42 1_555 A C 24 1_555 -0.820 -0.931 3.529 -5.415 11.599 34.635 -3.134 0.522 3.156 18.710 8.735 36.856 8 BB_G138G139:C121C122_BB B 138 ? B 122 ? B 139 ? B 121 ? 1 A G 42 1_555 A C 24 1_555 A A 46 1_555 A G 65 1_555 -5.835 -2.830 3.617 22.723 -4.467 81.157 -2.019 4.872 2.339 -3.373 -17.155 83.843 9 BB_G139A143:G162C121_BB B 139 ? B 121 ? B 143 ? B 162 ? 1 A A 46 1_555 A G 65 1_555 A C 47 1_555 A G 64 1_555 -0.171 -0.524 3.345 -4.731 7.901 42.623 -1.477 -0.231 3.203 10.720 6.418 43.562 10 BB_A143C144:G161G162_BB B 143 ? B 162 ? B 144 ? B 161 ? 1 A C 47 1_555 A G 64 1_555 A A 48 1_555 A U 63 1_555 0.878 -1.423 3.508 -0.737 12.965 28.138 -5.126 -1.786 2.593 25.048 1.423 30.935 11 BB_C144A145:U160G161_BB B 144 ? B 161 ? B 145 ? B 160 ? 1 A A 48 1_555 A U 63 1_555 A C 49 1_555 A G 62 1_555 0.077 -1.063 3.077 1.276 0.219 33.001 -1.905 0.068 3.071 0.385 -2.245 33.026 12 BB_A145C146:G159U160_BB B 145 ? B 160 ? B 146 ? B 159 ? 1 A C 49 1_555 A G 62 1_555 A C 50 1_555 A G 61 1_555 -0.343 -1.159 3.500 1.257 10.352 30.018 -4.044 0.861 2.932 19.269 -2.340 31.738 13 BB_C146C147:G158G159_BB B 146 ? B 159 ? B 147 ? B 158 ? 1 A U 15 1_555 A A 74 1_555 A C 16 1_555 A G 73 1_555 0.719 -1.828 3.528 0.622 -3.294 34.776 -2.494 -1.095 3.692 -5.495 -1.038 34.932 14 BB_U112C113:G170A171_BB B 112 ? B 171 ? B 113 ? B 170 ? 1 A C 16 1_555 A G 73 1_555 A C 17 1_555 A G 72 1_555 -0.125 -2.051 3.478 2.200 4.022 33.337 -4.216 0.584 3.201 6.969 -3.812 33.642 15 BB_C113C114:G169G170_BB B 113 ? B 170 ? B 114 ? B 169 ? 1 A C 17 1_555 A G 72 1_555 A C 18 1_555 A G 71 1_555 -1.167 -1.529 3.191 -2.118 10.133 27.970 -4.901 1.867 2.571 20.113 4.205 29.788 16 BB_C114C115:G168G169_BB B 114 ? B 169 ? B 115 ? B 168 ? 1 A C 18 1_555 A G 71 1_555 A A 19 1_555 A U 70 1_555 1.189 -0.714 2.819 -2.672 11.609 26.431 -3.490 -2.852 2.190 23.905 5.503 28.948 17 BB_C115A116:U167G168_BB B 115 ? B 168 ? B 116 ? B 167 ? 1 A A 19 1_555 A U 70 1_555 A G 20 1_555 A C 33 1_555 0.484 -2.316 3.659 -5.140 -3.994 38.897 -2.894 -1.413 3.778 -5.947 7.653 39.417 18 BB_A116G117:C130U167_BB B 116 ? B 167 ? B 117 ? B 130 ? 1 A G 20 1_555 A C 33 1_555 A C 21 1_555 A G 32 1_555 0.484 -1.889 3.201 0.693 0.380 35.685 -3.135 -0.692 3.189 0.620 -1.130 35.694 19 BB_G117C118:G129C130_BB B 117 ? B 130 ? B 118 ? B 129 ? 1 A C 21 1_555 A G 32 1_555 A C 22 1_555 A G 31 1_555 -0.839 -1.592 3.777 1.031 5.248 33.784 -3.632 1.609 3.471 8.960 -1.761 34.192 20 BB_C118C119:G128G129_BB B 118 ? B 129 ? B 119 ? B 128 ? 1 A C 22 1_555 A G 31 1_555 A U 23 1_555 A C 27 1_555 0.291 0.354 1.747 6.455 6.548 105.013 0.174 -0.135 1.772 4.121 -4.063 105.296 21 BB_C119U120:C124G128_BB B 119 ? B 128 ? B 120 ? B 124 ? # _atom_sites.entry_id 1VC5 _atom_sites.fract_transf_matrix[1][1] 0.009133 _atom_sites.fract_transf_matrix[1][2] 0.005273 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010546 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005331 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_