data_1WHM # _entry.id 1WHM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WHM pdb_00001whm 10.2210/pdb1whm/pdb RCSB RCSB023589 ? ? WWPDB D_1000023589 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk001000012.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WHM _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saitok, K.' 1 'Koshiba, S.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the 2nd CAP-Gly domain in human cylindromatosis tumor suppressor CYLD' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Saitok, K.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Cylindromatosis tumor suppressor CYLD' _entity.formula_weight 9565.613 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'CAP-Gly domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'KIAA0849 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHIN DIIPESSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHIN DIIPESSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk001000012.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 PRO n 1 10 LEU n 1 11 GLU n 1 12 ILE n 1 13 ASN n 1 14 SER n 1 15 ARG n 1 16 VAL n 1 17 SER n 1 18 LEU n 1 19 LYS n 1 20 VAL n 1 21 GLY n 1 22 GLU n 1 23 THR n 1 24 ILE n 1 25 GLU n 1 26 SER n 1 27 GLY n 1 28 THR n 1 29 VAL n 1 30 ILE n 1 31 PHE n 1 32 CYS n 1 33 ASP n 1 34 VAL n 1 35 LEU n 1 36 PRO n 1 37 GLY n 1 38 LYS n 1 39 GLU n 1 40 SER n 1 41 LEU n 1 42 GLY n 1 43 TYR n 1 44 PHE n 1 45 VAL n 1 46 GLY n 1 47 VAL n 1 48 ASP n 1 49 MET n 1 50 ASP n 1 51 ASN n 1 52 PRO n 1 53 ILE n 1 54 GLY n 1 55 ASN n 1 56 TRP n 1 57 ASP n 1 58 GLY n 1 59 ARG n 1 60 PHE n 1 61 ASP n 1 62 GLY n 1 63 VAL n 1 64 GLN n 1 65 LEU n 1 66 CYS n 1 67 SER n 1 68 PHE n 1 69 ALA n 1 70 CYS n 1 71 VAL n 1 72 GLU n 1 73 SER n 1 74 THR n 1 75 ILE n 1 76 LEU n 1 77 LEU n 1 78 HIS n 1 79 ILE n 1 80 ASN n 1 81 ASP n 1 82 ILE n 1 83 ILE n 1 84 PRO n 1 85 GLU n 1 86 SER n 1 87 SER n 1 88 GLY n 1 89 PRO n 1 90 SER n 1 91 SER n 1 92 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'Kazusa cDNA fh04363' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P031006-38 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free Protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CYLD_HUMAN _struct_ref.pdbx_db_accession Q9NQC7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIPES _struct_ref.pdbx_align_begin 235 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WHM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 86 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NQC7 _struct_ref_seq.db_align_beg 235 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 313 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 86 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WHM GLY A 1 ? UNP Q9NQC7 ? ? 'cloning artifact' 1 1 1 1WHM SER A 2 ? UNP Q9NQC7 ? ? 'cloning artifact' 2 2 1 1WHM SER A 3 ? UNP Q9NQC7 ? ? 'cloning artifact' 3 3 1 1WHM GLY A 4 ? UNP Q9NQC7 ? ? 'cloning artifact' 4 4 1 1WHM SER A 5 ? UNP Q9NQC7 ? ? 'cloning artifact' 5 5 1 1WHM SER A 6 ? UNP Q9NQC7 ? ? 'cloning artifact' 6 6 1 1WHM GLY A 7 ? UNP Q9NQC7 ? ? 'cloning artifact' 7 7 1 1WHM SER A 87 ? UNP Q9NQC7 ? ? 'cloning artifact' 87 8 1 1WHM GLY A 88 ? UNP Q9NQC7 ? ? 'cloning artifact' 88 9 1 1WHM PRO A 89 ? UNP Q9NQC7 ? ? 'cloning artifact' 89 10 1 1WHM SER A 90 ? UNP Q9NQC7 ? ? 'cloning artifact' 90 11 1 1WHM SER A 91 ? UNP Q9NQC7 ? ? 'cloning artifact' 91 12 1 1WHM GLY A 92 ? UNP Q9NQC7 ? ? 'cloning artifact' 92 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1mM protein, 20mM sodium phosphate buffer, pH 6.0, 100mM NaCl, 2mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1WHM _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1WHM _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WHM _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 collection Bruker 1 NMRPipe 20020425 processing 'Delaglio, F.' 2 NMRView 5 'data analysis' 'Johnson, B.A.' 3 CNS 1.1 'structure solution' 'Brunger, A.T.' 4 CNS 1.1 refinement 'Brunger, A.T.' 5 # _exptl.entry_id 1WHM _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WHM _struct.title 'Solution structure of the 2nd CAP-Gly domain in human cylindromatosis tumor suppressor CYLD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WHM _struct_keywords.pdbx_keywords 'ANTITUMOR PROTEIN' _struct_keywords.text ;Tumor suppressor, deubiquitinating enzyme, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, ANTITUMOR PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 74 ? HIS A 78 ? THR A 74 HIS A 78 A 2 PHE A 44 ? MET A 49 ? PHE A 44 MET A 49 A 3 THR A 23 ? ASP A 33 ? THR A 23 ASP A 33 A 4 ARG A 15 ? VAL A 20 ? ARG A 15 VAL A 20 A 5 ILE A 82 ? PRO A 84 ? ILE A 82 PRO A 84 B 1 ARG A 59 ? PHE A 60 ? ARG A 59 PHE A 60 B 2 VAL A 63 ? GLN A 64 ? VAL A 63 GLN A 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 77 ? O LEU A 77 N VAL A 45 ? N VAL A 45 A 2 3 O ASP A 48 ? O ASP A 48 N THR A 28 ? N THR A 28 A 3 4 O GLY A 27 ? O GLY A 27 N VAL A 16 ? N VAL A 16 A 4 5 N SER A 17 ? N SER A 17 O ILE A 83 ? O ILE A 83 B 1 2 N PHE A 60 ? N PHE A 60 O VAL A 63 ? O VAL A 63 # _database_PDB_matrix.entry_id 1WHM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WHM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 TRP 56 56 56 TRP TRP A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 CYS 66 66 66 CYS CYS A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 CYS 70 70 70 CYS CYS A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 HIS 78 78 78 HIS HIS A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 GLY 92 92 92 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 30 ? ? -151.26 -43.43 2 1 LYS A 38 ? ? -148.14 31.18 3 1 ILE A 53 ? ? -141.49 27.99 4 1 ASN A 55 ? ? -177.24 38.34 5 1 TRP A 56 ? ? -162.33 109.33 6 1 GLU A 72 ? ? -156.20 -43.07 7 1 SER A 91 ? ? -176.06 -40.46 8 2 SER A 5 ? ? -157.13 35.03 9 2 ILE A 30 ? ? -156.54 -43.09 10 2 ASP A 33 ? ? -176.52 -169.05 11 2 LYS A 38 ? ? -150.72 39.41 12 2 ASN A 55 ? ? -175.31 38.02 13 2 GLU A 72 ? ? -171.48 34.25 14 2 SER A 73 ? ? 179.73 -56.74 15 2 PRO A 84 ? ? -75.99 -168.59 16 2 SER A 87 ? ? 60.66 157.18 17 2 PRO A 89 ? ? -53.73 -172.12 18 2 SER A 90 ? ? 61.29 153.58 19 2 SER A 91 ? ? 63.11 123.25 20 3 ILE A 30 ? ? -139.53 -43.13 21 3 LYS A 38 ? ? -140.78 29.96 22 3 PRO A 52 ? ? -69.34 83.61 23 3 ILE A 53 ? ? -140.50 28.64 24 3 ASN A 55 ? ? -176.14 39.33 25 3 GLU A 72 ? ? -168.64 32.22 26 3 SER A 73 ? ? 177.37 -62.28 27 3 PRO A 84 ? ? -70.51 -167.86 28 3 PRO A 89 ? ? -68.68 99.62 29 3 SER A 90 ? ? -152.59 76.11 30 4 SER A 3 ? ? -171.24 35.12 31 4 ILE A 30 ? ? -133.71 -43.35 32 4 CYS A 32 ? ? -166.64 107.45 33 4 ILE A 53 ? ? -141.37 29.14 34 4 ASN A 55 ? ? -175.91 38.17 35 4 GLU A 72 ? ? -177.20 35.74 36 4 SER A 73 ? ? 177.80 -60.22 37 4 GLU A 85 ? ? -156.09 31.54 38 5 ILE A 30 ? ? -146.34 -42.97 39 5 CYS A 32 ? ? -166.87 101.30 40 5 ASP A 33 ? ? -172.77 -175.62 41 5 LYS A 38 ? ? -141.24 36.43 42 5 ASN A 55 ? ? -170.94 35.09 43 5 PHE A 68 ? ? -97.37 32.96 44 5 CYS A 70 ? ? -176.64 133.96 45 5 VAL A 71 ? ? -68.83 71.87 46 5 GLU A 72 ? ? -168.17 -40.80 47 5 PRO A 84 ? ? -71.56 -169.50 48 5 SER A 91 ? ? 60.60 95.74 49 6 SER A 6 ? ? -176.52 146.89 50 6 ILE A 30 ? ? -153.20 -43.08 51 6 LYS A 38 ? ? -152.89 30.52 52 6 PRO A 52 ? ? -69.75 74.52 53 6 ASN A 55 ? ? -174.65 36.78 54 6 ASP A 57 ? ? -98.68 30.85 55 6 CYS A 70 ? ? -176.92 130.11 56 6 VAL A 71 ? ? -67.24 75.18 57 6 GLU A 72 ? ? -167.44 -41.62 58 6 PRO A 84 ? ? -73.82 -168.25 59 7 SER A 6 ? ? 60.73 94.59 60 7 ILE A 30 ? ? -157.94 -43.17 61 7 LYS A 38 ? ? -143.49 31.12 62 7 ASN A 55 ? ? -161.47 31.06 63 7 GLU A 72 ? ? -170.12 -40.01 64 7 GLU A 85 ? ? 57.90 165.83 65 8 SER A 6 ? ? -154.00 80.75 66 8 ILE A 30 ? ? -157.95 -43.07 67 8 ASP A 33 ? ? -177.31 -169.47 68 8 LYS A 38 ? ? -145.17 31.57 69 8 ILE A 53 ? ? -142.50 25.73 70 8 ASN A 55 ? ? -177.48 37.84 71 8 PHE A 68 ? ? -96.28 41.24 72 8 VAL A 71 ? ? -66.40 77.10 73 8 GLU A 72 ? ? -165.06 -42.58 74 8 PRO A 84 ? ? -69.32 -167.84 75 8 SER A 87 ? ? -177.02 132.94 76 8 SER A 91 ? ? 60.41 178.87 77 9 SER A 6 ? ? 62.72 147.63 78 9 CYS A 32 ? ? -169.32 104.05 79 9 ASP A 33 ? ? -176.06 -168.57 80 9 LYS A 38 ? ? -146.58 30.71 81 9 PRO A 52 ? ? -69.07 81.66 82 9 ILE A 53 ? ? -140.33 30.41 83 9 ASN A 55 ? ? -177.20 37.68 84 9 CYS A 70 ? ? -175.12 136.32 85 9 GLU A 72 ? ? -151.51 -46.00 86 9 PRO A 84 ? ? -73.43 -168.42 87 9 SER A 87 ? ? 60.99 156.27 88 9 SER A 91 ? ? 62.85 90.51 89 10 ILE A 30 ? ? -158.24 -42.86 90 10 ASP A 33 ? ? -172.43 -169.37 91 10 LYS A 38 ? ? -147.58 30.45 92 10 PRO A 52 ? ? -69.80 87.04 93 10 ILE A 53 ? ? -145.58 26.84 94 10 ASN A 55 ? ? -175.07 37.05 95 10 VAL A 71 ? ? -68.64 74.30 96 10 GLU A 72 ? ? -168.96 -41.80 97 10 SER A 87 ? ? -167.58 35.49 98 11 ILE A 30 ? ? -136.56 -42.38 99 11 CYS A 32 ? ? -173.49 110.73 100 11 LYS A 38 ? ? -144.99 30.01 101 11 ASN A 55 ? ? -175.32 37.05 102 11 LEU A 65 ? ? -138.01 -47.37 103 11 PHE A 68 ? ? -96.41 33.64 104 11 VAL A 71 ? ? -65.62 79.22 105 11 GLU A 72 ? ? -172.95 -40.45 106 11 SER A 73 ? ? -131.29 -43.42 107 11 GLU A 85 ? ? -119.25 63.57 108 11 SER A 86 ? ? -109.79 44.64 109 11 SER A 91 ? ? 62.87 149.03 110 12 SER A 5 ? ? -146.72 -52.04 111 12 ILE A 30 ? ? -151.54 -43.54 112 12 ASP A 33 ? ? -176.55 -171.11 113 12 LYS A 38 ? ? -148.61 34.06 114 12 PRO A 52 ? ? -69.98 79.98 115 12 ASN A 55 ? ? -175.25 37.05 116 12 PHE A 68 ? ? -97.29 33.72 117 12 CYS A 70 ? ? -177.01 136.97 118 12 GLU A 72 ? ? -157.98 -44.81 119 12 PRO A 84 ? ? -69.86 -170.47 120 13 ILE A 30 ? ? -151.52 -43.95 121 13 CYS A 32 ? ? -174.12 100.87 122 13 ILE A 53 ? ? -144.12 27.84 123 13 ASN A 55 ? ? -164.97 32.09 124 13 GLU A 72 ? ? -150.50 -45.02 125 13 SER A 73 ? ? -130.60 -41.99 126 13 PRO A 84 ? ? -69.46 -176.50 127 13 SER A 91 ? ? 60.27 93.04 128 14 SER A 3 ? ? -134.29 -53.53 129 14 ILE A 30 ? ? -156.45 -43.21 130 14 LYS A 38 ? ? -144.71 33.15 131 14 PRO A 52 ? ? -68.58 87.72 132 14 ILE A 53 ? ? -148.79 27.08 133 14 ASN A 55 ? ? -174.14 38.26 134 14 CYS A 70 ? ? -176.46 135.03 135 14 VAL A 71 ? ? -68.61 78.58 136 14 GLU A 72 ? ? -174.07 -39.37 137 14 SER A 73 ? ? -128.43 -50.79 138 14 PRO A 84 ? ? -68.62 -178.05 139 14 SER A 86 ? ? -158.58 28.82 140 14 SER A 87 ? ? 57.68 96.18 141 14 SER A 91 ? ? -174.79 147.26 142 15 SER A 5 ? ? -159.43 83.02 143 15 SER A 6 ? ? 60.86 75.33 144 15 ILE A 30 ? ? -155.56 -43.10 145 15 PRO A 52 ? ? -69.01 84.24 146 15 ASN A 55 ? ? -176.43 40.27 147 15 ASP A 57 ? ? -97.43 32.20 148 15 GLU A 72 ? ? -172.19 32.84 149 15 SER A 73 ? ? 177.76 -55.79 150 15 PRO A 84 ? ? -78.11 -168.02 151 15 PRO A 89 ? ? -56.54 -163.67 152 15 SER A 90 ? ? -175.44 106.25 153 16 ILE A 30 ? ? -131.46 -41.81 154 16 CYS A 32 ? ? -176.80 95.48 155 16 LYS A 38 ? ? -144.74 38.66 156 16 PRO A 52 ? ? -69.25 84.05 157 16 ASN A 55 ? ? -170.23 34.51 158 16 VAL A 71 ? ? -64.89 83.33 159 16 GLU A 72 ? ? -176.87 -38.95 160 16 SER A 73 ? ? -130.59 -44.11 161 16 PRO A 84 ? ? -69.08 -175.74 162 16 SER A 86 ? ? -161.31 -45.14 163 17 SER A 2 ? ? 60.44 94.80 164 17 ILE A 30 ? ? -147.13 -43.23 165 17 ASP A 33 ? ? -178.84 -175.92 166 17 LYS A 38 ? ? -144.25 30.97 167 17 PRO A 52 ? ? -69.58 88.00 168 17 ILE A 53 ? ? -146.21 29.73 169 17 ASN A 55 ? ? -176.90 44.42 170 17 GLU A 72 ? ? -176.44 36.44 171 17 SER A 73 ? ? 179.01 -58.60 172 17 PRO A 84 ? ? -72.96 -168.17 173 18 SER A 3 ? ? 60.50 96.41 174 18 ILE A 30 ? ? -149.57 -43.37 175 18 CYS A 32 ? ? -160.23 108.29 176 18 LYS A 38 ? ? -148.00 31.59 177 18 ASN A 55 ? ? -165.68 32.87 178 18 GLU A 72 ? ? -170.02 -41.79 179 18 PRO A 84 ? ? -65.56 -161.23 180 18 GLU A 85 ? ? -99.96 31.31 181 18 SER A 87 ? ? -174.34 -41.02 182 18 PRO A 89 ? ? -69.32 -173.17 183 18 SER A 90 ? ? 61.40 154.39 184 19 SER A 2 ? ? 66.43 -74.93 185 19 SER A 3 ? ? 63.20 -79.40 186 19 SER A 5 ? ? -167.10 97.44 187 19 ILE A 30 ? ? -149.68 -43.72 188 19 LYS A 38 ? ? -149.64 36.19 189 19 PRO A 52 ? ? -69.82 78.75 190 19 ASN A 55 ? ? -174.79 39.42 191 19 PHE A 68 ? ? -96.76 37.48 192 19 GLU A 72 ? ? -176.56 35.10 193 19 SER A 73 ? ? 178.11 -54.00 194 19 GLU A 85 ? ? -99.28 39.32 195 19 SER A 86 ? ? -160.75 30.25 196 19 SER A 87 ? ? 59.14 -170.08 197 20 SER A 5 ? ? -157.28 -67.86 198 20 ILE A 30 ? ? -155.53 -43.13 199 20 ASP A 33 ? ? -176.81 -171.81 200 20 LYS A 38 ? ? -152.78 32.15 201 20 ASN A 55 ? ? -177.38 37.64 202 20 CYS A 70 ? ? -176.00 131.91 203 20 VAL A 71 ? ? -65.51 79.08 204 20 GLU A 72 ? ? -173.26 -39.66 #