data_1WUD # _entry.id 1WUD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1WUD RCSB RCSB024009 WWPDB D_1000024009 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WUD _pdbx_database_status.recvd_initial_deposition_date 2004-12-04 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bernstein, D.A.' 1 'Keck, J.L.' 2 # _citation.id primary _citation.title 'Conferring Substrate Specificity to DNA Helicases: Role of the RecQ HRDC Domain' _citation.journal_abbrev STRUCTURE _citation.journal_volume 13 _citation.page_first 1173 _citation.page_last 1182 _citation.year 2005 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16084389 _citation.pdbx_database_id_DOI 10.1016/j.str.2005.04.018 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bernstein, D.A.' 1 primary 'Keck, J.L.' 2 # _cell.entry_id 1WUD _cell.length_a 38.304 _cell.length_b 64.611 _cell.length_c 98.114 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WUD _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATP-dependent DNA helicase recQ' 10250.954 3 3.6.1.- ? 'HRDC domain' ? 2 water nat water 18.015 84 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSHQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIE(MSE)AEQ(MSE)PITASE(MSE)LSVNGVG (MSE)RKLERFGKPF(MSE)ALIRAHVDGDDEE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR AHVDGDDEE ; _entity_poly.pdbx_strand_id A,B,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 GLN n 1 5 LYS n 1 6 SER n 1 7 PHE n 1 8 GLY n 1 9 GLY n 1 10 ASN n 1 11 TYR n 1 12 ASP n 1 13 ARG n 1 14 LYS n 1 15 LEU n 1 16 PHE n 1 17 ALA n 1 18 LYS n 1 19 LEU n 1 20 ARG n 1 21 LYS n 1 22 LEU n 1 23 ARG n 1 24 LYS n 1 25 SER n 1 26 ILE n 1 27 ALA n 1 28 ASP n 1 29 GLU n 1 30 SER n 1 31 ASN n 1 32 VAL n 1 33 PRO n 1 34 PRO n 1 35 TYR n 1 36 VAL n 1 37 VAL n 1 38 PHE n 1 39 ASN n 1 40 ASP n 1 41 ALA n 1 42 THR n 1 43 LEU n 1 44 ILE n 1 45 GLU n 1 46 MSE n 1 47 ALA n 1 48 GLU n 1 49 GLN n 1 50 MSE n 1 51 PRO n 1 52 ILE n 1 53 THR n 1 54 ALA n 1 55 SER n 1 56 GLU n 1 57 MSE n 1 58 LEU n 1 59 SER n 1 60 VAL n 1 61 ASN n 1 62 GLY n 1 63 VAL n 1 64 GLY n 1 65 MSE n 1 66 ARG n 1 67 LYS n 1 68 LEU n 1 69 GLU n 1 70 ARG n 1 71 PHE n 1 72 GLY n 1 73 LYS n 1 74 PRO n 1 75 PHE n 1 76 MSE n 1 77 ALA n 1 78 LEU n 1 79 ILE n 1 80 ARG n 1 81 ALA n 1 82 HIS n 1 83 VAL n 1 84 ASP n 1 85 GLY n 1 86 ASP n 1 87 ASP n 1 88 GLU n 1 89 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RECQ_ECOLI _struct_ref.pdbx_db_accession P15043 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHV DGDDEE ; _struct_ref.pdbx_align_begin 523 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1WUD A 4 ? 89 ? P15043 523 ? 608 ? 524 609 2 1 1WUD B 4 ? 89 ? P15043 523 ? 608 ? 524 609 3 1 1WUD D 4 ? 89 ? P15043 523 ? 608 ? 524 609 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WUD GLY A 1 ? UNP P15043 ? ? 'CLONING ARTIFACT' 521 1 1 1WUD SER A 2 ? UNP P15043 ? ? 'CLONING ARTIFACT' 522 2 1 1WUD HIS A 3 ? UNP P15043 ? ? 'CLONING ARTIFACT' 523 3 1 1WUD MSE A 46 ? UNP P15043 MET 565 'MODIFIED RESIDUE' 566 4 1 1WUD MSE A 50 ? UNP P15043 MET 569 'MODIFIED RESIDUE' 570 5 1 1WUD MSE A 57 ? UNP P15043 MET 576 'MODIFIED RESIDUE' 577 6 1 1WUD MSE A 65 ? UNP P15043 MET 584 'MODIFIED RESIDUE' 585 7 1 1WUD MSE A 76 ? UNP P15043 MET 595 'MODIFIED RESIDUE' 596 8 2 1WUD GLY B 1 ? UNP P15043 ? ? 'CLONING ARTIFACT' 521 9 2 1WUD SER B 2 ? UNP P15043 ? ? 'CLONING ARTIFACT' 522 10 2 1WUD HIS B 3 ? UNP P15043 ? ? 'CLONING ARTIFACT' 523 11 2 1WUD MSE B 46 ? UNP P15043 MET 565 'MODIFIED RESIDUE' 566 12 2 1WUD MSE B 50 ? UNP P15043 MET 569 'MODIFIED RESIDUE' 570 13 2 1WUD MSE B 57 ? UNP P15043 MET 576 'MODIFIED RESIDUE' 577 14 2 1WUD MSE B 65 ? UNP P15043 MET 584 'MODIFIED RESIDUE' 585 15 2 1WUD MSE B 76 ? UNP P15043 MET 595 'MODIFIED RESIDUE' 596 16 3 1WUD GLY D 1 ? UNP P15043 ? ? 'CLONING ARTIFACT' 521 17 3 1WUD SER D 2 ? UNP P15043 ? ? 'CLONING ARTIFACT' 522 18 3 1WUD HIS D 3 ? UNP P15043 ? ? 'CLONING ARTIFACT' 523 19 3 1WUD MSE D 46 ? UNP P15043 MET 565 'MODIFIED RESIDUE' 566 20 3 1WUD MSE D 50 ? UNP P15043 MET 569 'MODIFIED RESIDUE' 570 21 3 1WUD MSE D 57 ? UNP P15043 MET 576 'MODIFIED RESIDUE' 577 22 3 1WUD MSE D 65 ? UNP P15043 MET 584 'MODIFIED RESIDUE' 585 23 3 1WUD MSE D 76 ? UNP P15043 MET 595 'MODIFIED RESIDUE' 596 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1WUD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'PEG 4000, MES, TCEP, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-10-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97941 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97941 # _reflns.entry_id 1WUD _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 50 _reflns.number_all 12828 _reflns.number_obs 12636 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1WUD _refine.ls_number_reflns_obs 12251 _refine.ls_number_reflns_all 12251 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.59 _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22523 _refine.ls_R_factor_R_free 0.26344 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 628 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.919 _refine.correlation_coeff_Fo_to_Fc_free 0.895 _refine.B_iso_mean 27.582 _refine.aniso_B[1][1] 0.78 _refine.aniso_B[2][2] 0.51 _refine.aniso_B[3][3] -1.29 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.323 _refine.pdbx_overall_ESU_R_Free 0.232 _refine.overall_SU_ML 0.152 _refine.overall_SU_B 5.801 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1817 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 1901 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1847 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.780 1.980 ? 2477 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.394 5.000 ? 226 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.055 0.200 ? 274 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1364 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.195 0.200 ? 853 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.106 0.200 ? 79 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.150 0.200 ? 58 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.079 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.965 1.500 ? 1142 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.860 2.000 ? 1838 'X-RAY DIFFRACTION' ? r_scbond_it 2.737 3.000 ? 705 'X-RAY DIFFRACTION' ? r_scangle_it 4.528 4.500 ? 639 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.256 _refine_ls_shell.number_reflns_R_work 891 _refine_ls_shell.R_factor_R_work 0.223 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.246 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1WUD _struct.title 'E. coli RecQ HRDC domain' _struct.pdbx_descriptor 'ATP-dependent DNA helicase recQ (E.C.3.6.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WUD _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'RecQ, DNA-binding domain, HRDC, helicase, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 _struct_biol.details 'The assembly of RecQ helicase domains is currently unclear.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 12 ? ASN A 31 ? ASP A 532 ASN A 551 1 ? 20 HELX_P HELX_P2 2 PRO A 33 ? PHE A 38 ? PRO A 553 PHE A 558 1 ? 6 HELX_P HELX_P3 3 ASN A 39 ? MSE A 50 ? ASN A 559 MSE A 570 1 ? 12 HELX_P HELX_P4 4 THR A 53 ? SER A 59 ? THR A 573 SER A 579 1 ? 7 HELX_P HELX_P5 5 GLY A 64 ? ASP A 84 ? GLY A 584 ASP A 604 1 ? 21 HELX_P HELX_P6 6 ASP B 12 ? ASN B 31 ? ASP B 532 ASN B 551 1 ? 20 HELX_P HELX_P7 7 PRO B 33 ? VAL B 37 ? PRO B 553 VAL B 557 5 ? 5 HELX_P HELX_P8 8 ASN B 39 ? MSE B 50 ? ASN B 559 MSE B 570 1 ? 12 HELX_P HELX_P9 9 THR B 53 ? SER B 59 ? THR B 573 SER B 579 1 ? 7 HELX_P HELX_P10 10 GLY B 64 ? GLY B 85 ? GLY B 584 GLY B 605 1 ? 22 HELX_P HELX_P11 11 ASP C 12 ? ASN C 31 ? ASP D 532 ASN D 551 1 ? 20 HELX_P HELX_P12 12 PRO C 33 ? PHE C 38 ? PRO D 553 PHE D 558 1 ? 6 HELX_P HELX_P13 13 ASN C 39 ? MSE C 50 ? ASN D 559 MSE D 570 1 ? 12 HELX_P HELX_P14 14 THR C 53 ? SER C 59 ? THR D 573 SER D 579 1 ? 7 HELX_P HELX_P15 15 GLY C 64 ? GLY C 85 ? GLY D 584 GLY D 605 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 45 C ? ? ? 1_555 A MSE 46 N ? ? A GLU 565 A MSE 566 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? A MSE 46 C ? ? ? 1_555 A ALA 47 N ? ? A MSE 566 A ALA 567 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A GLN 49 C ? ? ? 1_555 A MSE 50 N ? ? A GLN 569 A MSE 570 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 50 C ? ? ? 1_555 A PRO 51 N ? ? A MSE 570 A PRO 571 1_555 ? ? ? ? ? ? ? 1.337 ? covale5 covale ? ? A GLU 56 C ? ? ? 1_555 A MSE 57 N ? ? A GLU 576 A MSE 577 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 57 C ? ? ? 1_555 A LEU 58 N ? ? A MSE 577 A LEU 578 1_555 ? ? ? ? ? ? ? 1.335 ? covale7 covale ? ? A GLY 64 C ? ? ? 1_555 A MSE 65 N ? ? A GLY 584 A MSE 585 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? A MSE 65 C ? ? ? 1_555 A ARG 66 N ? ? A MSE 585 A ARG 586 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale ? ? A PHE 75 C ? ? ? 1_555 A MSE 76 N ? ? A PHE 595 A MSE 596 1_555 ? ? ? ? ? ? ? 1.334 ? covale10 covale ? ? A MSE 76 C ? ? ? 1_555 A ALA 77 N ? ? A MSE 596 A ALA 597 1_555 ? ? ? ? ? ? ? 1.337 ? covale11 covale ? ? B GLU 45 C ? ? ? 1_555 B MSE 46 N ? ? B GLU 565 B MSE 566 1_555 ? ? ? ? ? ? ? 1.332 ? covale12 covale ? ? B MSE 46 C ? ? ? 1_555 B ALA 47 N ? ? B MSE 566 B ALA 567 1_555 ? ? ? ? ? ? ? 1.336 ? covale13 covale ? ? B GLN 49 C ? ? ? 1_555 B MSE 50 N ? ? B GLN 569 B MSE 570 1_555 ? ? ? ? ? ? ? 1.331 ? covale14 covale ? ? B MSE 50 C ? ? ? 1_555 B PRO 51 N ? ? B MSE 570 B PRO 571 1_555 ? ? ? ? ? ? ? 1.334 ? covale15 covale ? ? B GLU 56 C ? ? ? 1_555 B MSE 57 N ? ? B GLU 576 B MSE 577 1_555 ? ? ? ? ? ? ? 1.335 ? covale16 covale ? ? B MSE 57 C ? ? ? 1_555 B LEU 58 N ? ? B MSE 577 B LEU 578 1_555 ? ? ? ? ? ? ? 1.335 ? covale17 covale ? ? B GLY 64 C ? ? ? 1_555 B MSE 65 N ? ? B GLY 584 B MSE 585 1_555 ? ? ? ? ? ? ? 1.329 ? covale18 covale ? ? B MSE 65 C ? ? ? 1_555 B ARG 66 N ? ? B MSE 585 B ARG 586 1_555 ? ? ? ? ? ? ? 1.330 ? covale19 covale ? ? B PHE 75 C ? ? ? 1_555 B MSE 76 N ? ? B PHE 595 B MSE 596 1_555 ? ? ? ? ? ? ? 1.327 ? covale20 covale ? ? B MSE 76 C ? ? ? 1_555 B ALA 77 N ? ? B MSE 596 B ALA 597 1_555 ? ? ? ? ? ? ? 1.336 ? covale21 covale ? ? C GLU 45 C ? ? ? 1_555 C MSE 46 N ? ? D GLU 565 D MSE 566 1_555 ? ? ? ? ? ? ? 1.337 ? covale22 covale ? ? C MSE 46 C ? ? ? 1_555 C ALA 47 N ? ? D MSE 566 D ALA 567 1_555 ? ? ? ? ? ? ? 1.334 ? covale23 covale ? ? C GLN 49 C ? ? ? 1_555 C MSE 50 N ? ? D GLN 569 D MSE 570 1_555 ? ? ? ? ? ? ? 1.333 ? covale24 covale ? ? C MSE 50 C ? ? ? 1_555 C PRO 51 N ? ? D MSE 570 D PRO 571 1_555 ? ? ? ? ? ? ? 1.337 ? covale25 covale ? ? C GLU 56 C ? ? ? 1_555 C MSE 57 N ? ? D GLU 576 D MSE 577 1_555 ? ? ? ? ? ? ? 1.333 ? covale26 covale ? ? C MSE 57 C ? ? ? 1_555 C LEU 58 N ? ? D MSE 577 D LEU 578 1_555 ? ? ? ? ? ? ? 1.331 ? covale27 covale ? ? C GLY 64 C ? ? ? 1_555 C MSE 65 N ? ? D GLY 584 D MSE 585 1_555 ? ? ? ? ? ? ? 1.333 ? covale28 covale ? ? C MSE 65 C ? ? ? 1_555 C ARG 66 N ? ? D MSE 585 D ARG 586 1_555 ? ? ? ? ? ? ? 1.333 ? covale29 covale ? ? C PHE 75 C ? ? ? 1_555 C MSE 76 N ? ? D PHE 595 D MSE 596 1_555 ? ? ? ? ? ? ? 1.327 ? covale30 covale ? ? C MSE 76 C ? ? ? 1_555 C ALA 77 N ? ? D MSE 596 D ALA 597 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1WUD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WUD _atom_sites.fract_transf_matrix[1][1] 0.026107 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015477 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010192 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 521 ? ? ? A . n A 1 2 SER 2 522 ? ? ? A . n A 1 3 HIS 3 523 ? ? ? A . n A 1 4 GLN 4 524 ? ? ? A . n A 1 5 LYS 5 525 ? ? ? A . n A 1 6 SER 6 526 ? ? ? A . n A 1 7 PHE 7 527 ? ? ? A . n A 1 8 GLY 8 528 ? ? ? A . n A 1 9 GLY 9 529 ? ? ? A . n A 1 10 ASN 10 530 530 ASN ASN A . n A 1 11 TYR 11 531 531 TYR TYR A . n A 1 12 ASP 12 532 532 ASP ASP A . n A 1 13 ARG 13 533 533 ARG ARG A . n A 1 14 LYS 14 534 534 LYS LYS A . n A 1 15 LEU 15 535 535 LEU LEU A . n A 1 16 PHE 16 536 536 PHE PHE A . n A 1 17 ALA 17 537 537 ALA ALA A . n A 1 18 LYS 18 538 538 LYS LYS A . n A 1 19 LEU 19 539 539 LEU LEU A . n A 1 20 ARG 20 540 540 ARG ARG A . n A 1 21 LYS 21 541 541 LYS LYS A . n A 1 22 LEU 22 542 542 LEU LEU A . n A 1 23 ARG 23 543 543 ARG ARG A . n A 1 24 LYS 24 544 544 LYS LYS A . n A 1 25 SER 25 545 545 SER SER A . n A 1 26 ILE 26 546 546 ILE ILE A . n A 1 27 ALA 27 547 547 ALA ALA A . n A 1 28 ASP 28 548 548 ASP ASP A . n A 1 29 GLU 29 549 549 GLU GLU A . n A 1 30 SER 30 550 550 SER SER A . n A 1 31 ASN 31 551 551 ASN ASN A . n A 1 32 VAL 32 552 552 VAL VAL A . n A 1 33 PRO 33 553 553 PRO PRO A . n A 1 34 PRO 34 554 554 PRO PRO A . n A 1 35 TYR 35 555 555 TYR TYR A . n A 1 36 VAL 36 556 556 VAL VAL A . n A 1 37 VAL 37 557 557 VAL VAL A . n A 1 38 PHE 38 558 558 PHE PHE A . n A 1 39 ASN 39 559 559 ASN ASN A . n A 1 40 ASP 40 560 560 ASP ASP A . n A 1 41 ALA 41 561 561 ALA ALA A . n A 1 42 THR 42 562 562 THR THR A . n A 1 43 LEU 43 563 563 LEU LEU A . n A 1 44 ILE 44 564 564 ILE ILE A . n A 1 45 GLU 45 565 565 GLU GLU A . n A 1 46 MSE 46 566 566 MSE MSE A . n A 1 47 ALA 47 567 567 ALA ALA A . n A 1 48 GLU 48 568 568 GLU GLU A . n A 1 49 GLN 49 569 569 GLN GLN A . n A 1 50 MSE 50 570 570 MSE MSE A . n A 1 51 PRO 51 571 571 PRO PRO A . n A 1 52 ILE 52 572 572 ILE ILE A . n A 1 53 THR 53 573 573 THR THR A . n A 1 54 ALA 54 574 574 ALA ALA A . n A 1 55 SER 55 575 575 SER SER A . n A 1 56 GLU 56 576 576 GLU GLU A . n A 1 57 MSE 57 577 577 MSE MSE A . n A 1 58 LEU 58 578 578 LEU LEU A . n A 1 59 SER 59 579 579 SER SER A . n A 1 60 VAL 60 580 580 VAL VAL A . n A 1 61 ASN 61 581 581 ASN ASN A . n A 1 62 GLY 62 582 582 GLY GLY A . n A 1 63 VAL 63 583 583 VAL VAL A . n A 1 64 GLY 64 584 584 GLY GLY A . n A 1 65 MSE 65 585 585 MSE MSE A . n A 1 66 ARG 66 586 586 ARG ARG A . n A 1 67 LYS 67 587 587 LYS LYS A . n A 1 68 LEU 68 588 588 LEU LEU A . n A 1 69 GLU 69 589 589 GLU GLU A . n A 1 70 ARG 70 590 590 ARG ARG A . n A 1 71 PHE 71 591 591 PHE PHE A . n A 1 72 GLY 72 592 592 GLY GLY A . n A 1 73 LYS 73 593 593 LYS LYS A . n A 1 74 PRO 74 594 594 PRO PRO A . n A 1 75 PHE 75 595 595 PHE PHE A . n A 1 76 MSE 76 596 596 MSE MSE A . n A 1 77 ALA 77 597 597 ALA ALA A . n A 1 78 LEU 78 598 598 LEU LEU A . n A 1 79 ILE 79 599 599 ILE ILE A . n A 1 80 ARG 80 600 600 ARG ARG A . n A 1 81 ALA 81 601 601 ALA ALA A . n A 1 82 HIS 82 602 602 HIS HIS A . n A 1 83 VAL 83 603 603 VAL VAL A . n A 1 84 ASP 84 604 604 ASP ASP A . n A 1 85 GLY 85 605 605 GLY GLY A . n A 1 86 ASP 86 606 606 ASP ASP A . n A 1 87 ASP 87 607 ? ? ? A . n A 1 88 GLU 88 608 ? ? ? A . n A 1 89 GLU 89 609 ? ? ? A . n B 1 1 GLY 1 521 ? ? ? B . n B 1 2 SER 2 522 ? ? ? B . n B 1 3 HIS 3 523 ? ? ? B . n B 1 4 GLN 4 524 ? ? ? B . n B 1 5 LYS 5 525 ? ? ? B . n B 1 6 SER 6 526 ? ? ? B . n B 1 7 PHE 7 527 ? ? ? B . n B 1 8 GLY 8 528 ? ? ? B . n B 1 9 GLY 9 529 ? ? ? B . n B 1 10 ASN 10 530 ? ? ? B . n B 1 11 TYR 11 531 531 TYR TYR B . n B 1 12 ASP 12 532 532 ASP ASP B . n B 1 13 ARG 13 533 533 ARG ARG B . n B 1 14 LYS 14 534 534 LYS LYS B . n B 1 15 LEU 15 535 535 LEU LEU B . n B 1 16 PHE 16 536 536 PHE PHE B . n B 1 17 ALA 17 537 537 ALA ALA B . n B 1 18 LYS 18 538 538 LYS LYS B . n B 1 19 LEU 19 539 539 LEU LEU B . n B 1 20 ARG 20 540 540 ARG ARG B . n B 1 21 LYS 21 541 541 LYS LYS B . n B 1 22 LEU 22 542 542 LEU LEU B . n B 1 23 ARG 23 543 543 ARG ARG B . n B 1 24 LYS 24 544 544 LYS LYS B . n B 1 25 SER 25 545 545 SER SER B . n B 1 26 ILE 26 546 546 ILE ILE B . n B 1 27 ALA 27 547 547 ALA ALA B . n B 1 28 ASP 28 548 548 ASP ASP B . n B 1 29 GLU 29 549 549 GLU GLU B . n B 1 30 SER 30 550 550 SER SER B . n B 1 31 ASN 31 551 551 ASN ASN B . n B 1 32 VAL 32 552 552 VAL VAL B . n B 1 33 PRO 33 553 553 PRO PRO B . n B 1 34 PRO 34 554 554 PRO PRO B . n B 1 35 TYR 35 555 555 TYR TYR B . n B 1 36 VAL 36 556 556 VAL VAL B . n B 1 37 VAL 37 557 557 VAL VAL B . n B 1 38 PHE 38 558 558 PHE PHE B . n B 1 39 ASN 39 559 559 ASN ASN B . n B 1 40 ASP 40 560 560 ASP ASP B . n B 1 41 ALA 41 561 561 ALA ALA B . n B 1 42 THR 42 562 562 THR THR B . n B 1 43 LEU 43 563 563 LEU LEU B . n B 1 44 ILE 44 564 564 ILE ILE B . n B 1 45 GLU 45 565 565 GLU GLU B . n B 1 46 MSE 46 566 566 MSE MSE B . n B 1 47 ALA 47 567 567 ALA ALA B . n B 1 48 GLU 48 568 568 GLU GLU B . n B 1 49 GLN 49 569 569 GLN GLN B . n B 1 50 MSE 50 570 570 MSE MSE B . n B 1 51 PRO 51 571 571 PRO PRO B . n B 1 52 ILE 52 572 572 ILE ILE B . n B 1 53 THR 53 573 573 THR THR B . n B 1 54 ALA 54 574 574 ALA ALA B . n B 1 55 SER 55 575 575 SER SER B . n B 1 56 GLU 56 576 576 GLU GLU B . n B 1 57 MSE 57 577 577 MSE MSE B . n B 1 58 LEU 58 578 578 LEU LEU B . n B 1 59 SER 59 579 579 SER SER B . n B 1 60 VAL 60 580 580 VAL VAL B . n B 1 61 ASN 61 581 581 ASN ASN B . n B 1 62 GLY 62 582 582 GLY GLY B . n B 1 63 VAL 63 583 583 VAL VAL B . n B 1 64 GLY 64 584 584 GLY GLY B . n B 1 65 MSE 65 585 585 MSE MSE B . n B 1 66 ARG 66 586 586 ARG ARG B . n B 1 67 LYS 67 587 587 LYS LYS B . n B 1 68 LEU 68 588 588 LEU LEU B . n B 1 69 GLU 69 589 589 GLU GLU B . n B 1 70 ARG 70 590 590 ARG ARG B . n B 1 71 PHE 71 591 591 PHE PHE B . n B 1 72 GLY 72 592 592 GLY GLY B . n B 1 73 LYS 73 593 593 LYS LYS B . n B 1 74 PRO 74 594 594 PRO PRO B . n B 1 75 PHE 75 595 595 PHE PHE B . n B 1 76 MSE 76 596 596 MSE MSE B . n B 1 77 ALA 77 597 597 ALA ALA B . n B 1 78 LEU 78 598 598 LEU LEU B . n B 1 79 ILE 79 599 599 ILE ILE B . n B 1 80 ARG 80 600 600 ARG ARG B . n B 1 81 ALA 81 601 601 ALA ALA B . n B 1 82 HIS 82 602 602 HIS HIS B . n B 1 83 VAL 83 603 603 VAL VAL B . n B 1 84 ASP 84 604 604 ASP ASP B . n B 1 85 GLY 85 605 605 GLY GLY B . n B 1 86 ASP 86 606 606 ASP ASP B . n B 1 87 ASP 87 607 ? ? ? B . n B 1 88 GLU 88 608 ? ? ? B . n B 1 89 GLU 89 609 ? ? ? B . n C 1 1 GLY 1 521 ? ? ? D . n C 1 2 SER 2 522 ? ? ? D . n C 1 3 HIS 3 523 ? ? ? D . n C 1 4 GLN 4 524 ? ? ? D . n C 1 5 LYS 5 525 ? ? ? D . n C 1 6 SER 6 526 ? ? ? D . n C 1 7 PHE 7 527 ? ? ? D . n C 1 8 GLY 8 528 ? ? ? D . n C 1 9 GLY 9 529 ? ? ? D . n C 1 10 ASN 10 530 ? ? ? D . n C 1 11 TYR 11 531 531 TYR TYR D . n C 1 12 ASP 12 532 532 ASP ASP D . n C 1 13 ARG 13 533 533 ARG ARG D . n C 1 14 LYS 14 534 534 LYS LYS D . n C 1 15 LEU 15 535 535 LEU LEU D . n C 1 16 PHE 16 536 536 PHE PHE D . n C 1 17 ALA 17 537 537 ALA ALA D . n C 1 18 LYS 18 538 538 LYS LYS D . n C 1 19 LEU 19 539 539 LEU LEU D . n C 1 20 ARG 20 540 540 ARG ARG D . n C 1 21 LYS 21 541 541 LYS LYS D . n C 1 22 LEU 22 542 542 LEU LEU D . n C 1 23 ARG 23 543 543 ARG ARG D . n C 1 24 LYS 24 544 544 LYS LYS D . n C 1 25 SER 25 545 545 SER SER D . n C 1 26 ILE 26 546 546 ILE ILE D . n C 1 27 ALA 27 547 547 ALA ALA D . n C 1 28 ASP 28 548 548 ASP ASP D . n C 1 29 GLU 29 549 549 GLU GLU D . n C 1 30 SER 30 550 550 SER SER D . n C 1 31 ASN 31 551 551 ASN ASN D . n C 1 32 VAL 32 552 552 VAL VAL D . n C 1 33 PRO 33 553 553 PRO PRO D . n C 1 34 PRO 34 554 554 PRO PRO D . n C 1 35 TYR 35 555 555 TYR TYR D . n C 1 36 VAL 36 556 556 VAL VAL D . n C 1 37 VAL 37 557 557 VAL VAL D . n C 1 38 PHE 38 558 558 PHE PHE D . n C 1 39 ASN 39 559 559 ASN ASN D . n C 1 40 ASP 40 560 560 ASP ASP D . n C 1 41 ALA 41 561 561 ALA ALA D . n C 1 42 THR 42 562 562 THR THR D . n C 1 43 LEU 43 563 563 LEU LEU D . n C 1 44 ILE 44 564 564 ILE ILE D . n C 1 45 GLU 45 565 565 GLU GLU D . n C 1 46 MSE 46 566 566 MSE MSE D . n C 1 47 ALA 47 567 567 ALA ALA D . n C 1 48 GLU 48 568 568 GLU GLU D . n C 1 49 GLN 49 569 569 GLN GLN D . n C 1 50 MSE 50 570 570 MSE MSE D . n C 1 51 PRO 51 571 571 PRO PRO D . n C 1 52 ILE 52 572 572 ILE ILE D . n C 1 53 THR 53 573 573 THR THR D . n C 1 54 ALA 54 574 574 ALA ALA D . n C 1 55 SER 55 575 575 SER SER D . n C 1 56 GLU 56 576 576 GLU GLU D . n C 1 57 MSE 57 577 577 MSE MSE D . n C 1 58 LEU 58 578 578 LEU LEU D . n C 1 59 SER 59 579 579 SER SER D . n C 1 60 VAL 60 580 580 VAL VAL D . n C 1 61 ASN 61 581 581 ASN ASN D . n C 1 62 GLY 62 582 582 GLY GLY D . n C 1 63 VAL 63 583 583 VAL VAL D . n C 1 64 GLY 64 584 584 GLY GLY D . n C 1 65 MSE 65 585 585 MSE MSE D . n C 1 66 ARG 66 586 586 ARG ARG D . n C 1 67 LYS 67 587 587 LYS LYS D . n C 1 68 LEU 68 588 588 LEU LEU D . n C 1 69 GLU 69 589 589 GLU GLU D . n C 1 70 ARG 70 590 590 ARG ARG D . n C 1 71 PHE 71 591 591 PHE PHE D . n C 1 72 GLY 72 592 592 GLY GLY D . n C 1 73 LYS 73 593 593 LYS LYS D . n C 1 74 PRO 74 594 594 PRO PRO D . n C 1 75 PHE 75 595 595 PHE PHE D . n C 1 76 MSE 76 596 596 MSE MSE D . n C 1 77 ALA 77 597 597 ALA ALA D . n C 1 78 LEU 78 598 598 LEU LEU D . n C 1 79 ILE 79 599 599 ILE ILE D . n C 1 80 ARG 80 600 600 ARG ARG D . n C 1 81 ALA 81 601 601 ALA ALA D . n C 1 82 HIS 82 602 602 HIS HIS D . n C 1 83 VAL 83 603 603 VAL VAL D . n C 1 84 ASP 84 604 604 ASP ASP D . n C 1 85 GLY 85 605 605 GLY GLY D . n C 1 86 ASP 86 606 606 ASP ASP D . n C 1 87 ASP 87 607 ? ? ? D . n C 1 88 GLU 88 608 ? ? ? D . n C 1 89 GLU 89 609 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 5 5 HOH HOH A . D 2 HOH 2 6 6 HOH HOH A . D 2 HOH 3 7 7 HOH HOH A . D 2 HOH 4 13 13 HOH HOH A . D 2 HOH 5 15 15 HOH HOH A . D 2 HOH 6 23 23 HOH HOH A . D 2 HOH 7 32 32 HOH HOH A . D 2 HOH 8 37 37 HOH HOH A . D 2 HOH 9 46 46 HOH HOH A . D 2 HOH 10 47 47 HOH HOH A . D 2 HOH 11 51 51 HOH HOH A . D 2 HOH 12 54 54 HOH HOH A . D 2 HOH 13 55 55 HOH HOH A . D 2 HOH 14 58 58 HOH HOH A . D 2 HOH 15 61 61 HOH HOH A . D 2 HOH 16 62 62 HOH HOH A . D 2 HOH 17 68 68 HOH HOH A . D 2 HOH 18 72 72 HOH HOH A . D 2 HOH 19 74 74 HOH HOH A . D 2 HOH 20 76 76 HOH HOH A . D 2 HOH 21 79 79 HOH HOH A . D 2 HOH 22 84 84 HOH HOH A . E 2 HOH 1 1 1 HOH HOH B . E 2 HOH 2 4 4 HOH HOH B . E 2 HOH 3 9 9 HOH HOH B . E 2 HOH 4 10 10 HOH HOH B . E 2 HOH 5 11 11 HOH HOH B . E 2 HOH 6 14 14 HOH HOH B . E 2 HOH 7 16 16 HOH HOH B . E 2 HOH 8 17 17 HOH HOH B . E 2 HOH 9 18 18 HOH HOH B . E 2 HOH 10 19 19 HOH HOH B . E 2 HOH 11 20 20 HOH HOH B . E 2 HOH 12 21 21 HOH HOH B . E 2 HOH 13 22 22 HOH HOH B . E 2 HOH 14 24 24 HOH HOH B . E 2 HOH 15 25 25 HOH HOH B . E 2 HOH 16 26 26 HOH HOH B . E 2 HOH 17 27 27 HOH HOH B . E 2 HOH 18 31 31 HOH HOH B . E 2 HOH 19 33 33 HOH HOH B . E 2 HOH 20 34 34 HOH HOH B . E 2 HOH 21 36 36 HOH HOH B . E 2 HOH 22 39 39 HOH HOH B . E 2 HOH 23 42 42 HOH HOH B . E 2 HOH 24 45 45 HOH HOH B . E 2 HOH 25 49 49 HOH HOH B . E 2 HOH 26 52 52 HOH HOH B . E 2 HOH 27 53 53 HOH HOH B . E 2 HOH 28 56 56 HOH HOH B . E 2 HOH 29 57 57 HOH HOH B . E 2 HOH 30 64 64 HOH HOH B . E 2 HOH 31 65 65 HOH HOH B . E 2 HOH 32 66 66 HOH HOH B . E 2 HOH 33 67 67 HOH HOH B . E 2 HOH 34 70 70 HOH HOH B . E 2 HOH 35 73 73 HOH HOH B . E 2 HOH 36 75 75 HOH HOH B . E 2 HOH 37 78 78 HOH HOH B . E 2 HOH 38 82 82 HOH HOH B . F 2 HOH 1 2 2 HOH HOH D . F 2 HOH 2 3 3 HOH HOH D . F 2 HOH 3 8 8 HOH HOH D . F 2 HOH 4 12 12 HOH HOH D . F 2 HOH 5 28 28 HOH HOH D . F 2 HOH 6 29 29 HOH HOH D . F 2 HOH 7 30 30 HOH HOH D . F 2 HOH 8 35 35 HOH HOH D . F 2 HOH 9 38 38 HOH HOH D . F 2 HOH 10 40 40 HOH HOH D . F 2 HOH 11 41 41 HOH HOH D . F 2 HOH 12 43 43 HOH HOH D . F 2 HOH 13 44 44 HOH HOH D . F 2 HOH 14 48 48 HOH HOH D . F 2 HOH 15 50 50 HOH HOH D . F 2 HOH 16 59 59 HOH HOH D . F 2 HOH 17 60 60 HOH HOH D . F 2 HOH 18 63 63 HOH HOH D . F 2 HOH 19 69 69 HOH HOH D . F 2 HOH 20 71 71 HOH HOH D . F 2 HOH 21 77 77 HOH HOH D . F 2 HOH 22 80 80 HOH HOH D . F 2 HOH 23 81 81 HOH HOH D . F 2 HOH 24 83 83 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 46 A MSE 566 ? MET SELENOMETHIONINE 2 A MSE 50 A MSE 570 ? MET SELENOMETHIONINE 3 A MSE 57 A MSE 577 ? MET SELENOMETHIONINE 4 A MSE 65 A MSE 585 ? MET SELENOMETHIONINE 5 A MSE 76 A MSE 596 ? MET SELENOMETHIONINE 6 B MSE 46 B MSE 566 ? MET SELENOMETHIONINE 7 B MSE 50 B MSE 570 ? MET SELENOMETHIONINE 8 B MSE 57 B MSE 577 ? MET SELENOMETHIONINE 9 B MSE 65 B MSE 585 ? MET SELENOMETHIONINE 10 B MSE 76 B MSE 596 ? MET SELENOMETHIONINE 11 C MSE 46 D MSE 566 ? MET SELENOMETHIONINE 12 C MSE 50 D MSE 570 ? MET SELENOMETHIONINE 13 C MSE 57 D MSE 577 ? MET SELENOMETHIONINE 14 C MSE 65 D MSE 585 ? MET SELENOMETHIONINE 15 C MSE 76 D MSE 596 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-09 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 24.2686 -15.7731 25.1741 0.2144 0.1820 0.2146 0.0114 -0.0259 -0.0028 3.1054 3.4302 3.7894 -0.3022 -0.5296 -0.8617 -0.0718 0.1486 -0.0768 0.0761 0.0513 -0.0565 -0.0392 -0.0595 0.0174 'X-RAY DIFFRACTION' 2 ? refined 20.2797 9.7232 -7.6297 0.1981 0.1872 0.1922 0.0032 0.0051 0.0124 3.5880 1.8388 2.3858 -0.4238 0.5726 -0.1983 0.1147 -0.0713 -0.0433 0.0622 -0.1105 0.0906 -0.0904 0.0938 -0.0518 'X-RAY DIFFRACTION' 3 ? refined 19.9659 -5.6251 7.3175 0.2040 0.2134 0.2071 -0.0289 0.0007 0.0375 2.8312 5.0225 4.0483 0.1712 0.3218 0.3683 -0.0393 0.1293 -0.0900 0.0612 -0.2261 0.1532 -0.0595 0.2930 -0.1634 'X-RAY DIFFRACTION' 4 ? refined 23.1636 0.8601 7.9135 0.0590 0.0447 0.0433 -0.0185 0.0034 0.0399 0.2450 0.4466 0.2563 -0.3802 0.2351 -0.2756 0.0301 -0.0617 0.0316 -0.0525 0.0621 -0.1108 -0.0315 -0.0057 -0.0298 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 530 A 606 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 531 B 606 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 D 531 D 606 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 1 A 84 ? . . . . ? 'X-RAY DIFFRACTION' 5 4 B 1 B 84 ? . . . . ? 'X-RAY DIFFRACTION' 6 4 D 2 D 84 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 557 ? ? -74.98 -73.91 2 1 VAL B 557 ? ? -70.19 -71.07 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 521 ? A GLY 1 2 1 Y 1 A SER 522 ? A SER 2 3 1 Y 1 A HIS 523 ? A HIS 3 4 1 Y 1 A GLN 524 ? A GLN 4 5 1 Y 1 A LYS 525 ? A LYS 5 6 1 Y 1 A SER 526 ? A SER 6 7 1 Y 1 A PHE 527 ? A PHE 7 8 1 Y 1 A GLY 528 ? A GLY 8 9 1 Y 1 A GLY 529 ? A GLY 9 10 1 Y 1 A ASP 607 ? A ASP 87 11 1 Y 1 A GLU 608 ? A GLU 88 12 1 Y 1 A GLU 609 ? A GLU 89 13 1 Y 1 B GLY 521 ? B GLY 1 14 1 Y 1 B SER 522 ? B SER 2 15 1 Y 1 B HIS 523 ? B HIS 3 16 1 Y 1 B GLN 524 ? B GLN 4 17 1 Y 1 B LYS 525 ? B LYS 5 18 1 Y 1 B SER 526 ? B SER 6 19 1 Y 1 B PHE 527 ? B PHE 7 20 1 Y 1 B GLY 528 ? B GLY 8 21 1 Y 1 B GLY 529 ? B GLY 9 22 1 Y 1 B ASN 530 ? B ASN 10 23 1 Y 1 B ASP 607 ? B ASP 87 24 1 Y 1 B GLU 608 ? B GLU 88 25 1 Y 1 B GLU 609 ? B GLU 89 26 1 Y 1 D GLY 521 ? C GLY 1 27 1 Y 1 D SER 522 ? C SER 2 28 1 Y 1 D HIS 523 ? C HIS 3 29 1 Y 1 D GLN 524 ? C GLN 4 30 1 Y 1 D LYS 525 ? C LYS 5 31 1 Y 1 D SER 526 ? C SER 6 32 1 Y 1 D PHE 527 ? C PHE 7 33 1 Y 1 D GLY 528 ? C GLY 8 34 1 Y 1 D GLY 529 ? C GLY 9 35 1 Y 1 D ASN 530 ? C ASN 10 36 1 Y 1 D ASP 607 ? C ASP 87 37 1 Y 1 D GLU 608 ? C GLU 88 38 1 Y 1 D GLU 609 ? C GLU 89 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #