data_1XOK # _entry.id 1XOK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XOK pdb_00001xok 10.2210/pdb1xok/pdb NDB PR0141 ? ? RCSB RCSB030582 ? ? WWPDB D_1000030582 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-01-04 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XOK _pdbx_database_status.recvd_initial_deposition_date 2004-10-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Guogas, L.M.' 1 'Filman, D.J.' 2 'Hogle, J.M.' 3 'Gehrke, L.' 4 # _citation.id primary _citation.title 'Cofolding organizes alfalfa mosaic virus RNA and coat protein for replication.' _citation.journal_abbrev Science _citation.journal_volume 306 _citation.page_first 2108 _citation.page_last 2111 _citation.year 2004 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15604410 _citation.pdbx_database_id_DOI 10.1126/science.1103399 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guogas, L.M.' 1 ? primary 'Filman, D.J.' 2 ? primary 'Hogle, J.M.' 3 ? primary 'Gehrke, L.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;alfalfa mosaic virus RNA 3' UTR ; 9533.723 1 ? ? 'amv rna bases 843-872' ? 2 polymer syn ;alfalfa mosaic virus RNA 3' UTR ; 2934.831 1 ? ? 'amv rna bases 873-881' ? 3 polymer syn 'Coat protein' 2756.170 2 ? ? 'amv coat protein residues 1-26' ? 4 non-polymer syn 'BROMIDE ION' 79.904 1 ? ? ? ? 5 water nat water 18.015 7 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no AUGCUCAUGCAAAACUGCAUGAAUGCCCCU AUGCUCAUGCAAAACUGCAUGAAUGCCCCU A ? 2 polyribonucleotide no no AAGGGAUGC AAGGGAUGC B ? 3 'polypeptide(L)' no no SSSQKKAGGKAGKPTKRSQNYAALRK SSSQKKAGGKAGKPTKRSQNYAALRK C,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'BROMIDE ION' BR 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 U n 1 3 G n 1 4 C n 1 5 U n 1 6 C n 1 7 A n 1 8 U n 1 9 G n 1 10 C n 1 11 A n 1 12 A n 1 13 A n 1 14 A n 1 15 C n 1 16 U n 1 17 G n 1 18 C n 1 19 A n 1 20 U n 1 21 G n 1 22 A n 1 23 A n 1 24 U n 1 25 G n 1 26 C n 1 27 C n 1 28 C n 1 29 C n 1 30 U n 2 1 A n 2 2 A n 2 3 G n 2 4 G n 2 5 G n 2 6 A n 2 7 U n 2 8 G n 2 9 C n 3 1 SER n 3 2 SER n 3 3 SER n 3 4 GLN n 3 5 LYS n 3 6 LYS n 3 7 ALA n 3 8 GLY n 3 9 GLY n 3 10 LYS n 3 11 ALA n 3 12 GLY n 3 13 LYS n 3 14 PRO n 3 15 THR n 3 16 LYS n 3 17 ARG n 3 18 SER n 3 19 GLN n 3 20 ASN n 3 21 TYR n 3 22 ALA n 3 23 ALA n 3 24 LEU n 3 25 ARG n 3 26 LYS n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'rna synthesis dharmacon research' 2 1 sample ? ? ? ? ? 'rna synthesis dharmacon research' 3 1 sample ? ? ? ? ? 'peptide synthesis by mit biopolymers laboratory' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 843 843 A A A . n A 1 2 U 2 844 844 U U A . n A 1 3 G 3 845 845 G G A . n A 1 4 C 4 846 846 C C A . n A 1 5 U 5 847 847 U U A . n A 1 6 C 6 848 848 C C A . n A 1 7 A 7 849 849 A A A . n A 1 8 U 8 850 850 U U A . n A 1 9 G 9 851 851 G G A . n A 1 10 C 10 852 852 C C A . n A 1 11 A 11 853 ? ? ? A . n A 1 12 A 12 854 ? ? ? A . n A 1 13 A 13 855 ? ? ? A . n A 1 14 A 14 856 856 A A A . n A 1 15 C 15 857 857 C C A . n A 1 16 U 16 858 858 U U A . n A 1 17 G 17 859 859 G G A . n A 1 18 C 18 860 860 C C A . n A 1 19 A 19 861 861 A A A . n A 1 20 U 20 862 862 U U A . n A 1 21 G 21 863 863 G G A . n A 1 22 A 22 864 864 A A A . n A 1 23 A 23 865 865 A A A . n A 1 24 U 24 866 866 U U A . n A 1 25 G 25 867 867 G G A . n A 1 26 C 26 868 868 C C A . n A 1 27 C 27 869 869 C C A . n A 1 28 C 28 870 870 C C A . n A 1 29 C 29 871 871 C C A . n A 1 30 U 30 872 872 U U A . n B 2 1 A 1 873 873 A A B . n B 2 2 A 2 874 874 A A B . n B 2 3 G 3 875 875 G G B . n B 2 4 G 4 876 876 G G B . n B 2 5 G 5 877 877 G G B . n B 2 6 A 6 878 878 A A B . n B 2 7 U 7 879 879 U U B . n B 2 8 G 8 880 880 G G B . n B 2 9 C 9 881 881 C C B . n C 3 1 SER 1 1 ? ? ? C . n C 3 2 SER 2 2 ? ? ? C . n C 3 3 SER 3 3 ? ? ? C . n C 3 4 GLN 4 4 ? ? ? C . n C 3 5 LYS 5 5 ? ? ? C . n C 3 6 LYS 6 6 ? ? ? C . n C 3 7 ALA 7 7 ? ? ? C . n C 3 8 GLY 8 8 ? ? ? C . n C 3 9 GLY 9 9 ? ? ? C . n C 3 10 LYS 10 10 ? ? ? C . n C 3 11 ALA 11 11 ? ? ? C . n C 3 12 GLY 12 12 12 GLY GLY C . n C 3 13 LYS 13 13 13 LYS LYS C . n C 3 14 PRO 14 14 14 PRO PRO C . n C 3 15 THR 15 15 15 THR THR C . n C 3 16 LYS 16 16 16 LYS LYS C . n C 3 17 ARG 17 17 17 ARG ARG C . n C 3 18 SER 18 18 18 SER SER C . n C 3 19 GLN 19 19 19 GLN GLN C . n C 3 20 ASN 20 20 20 ASN ASN C . n C 3 21 TYR 21 21 21 TYR TYR C . n C 3 22 ALA 22 22 22 ALA ALA C . n C 3 23 ALA 23 23 23 ALA ALA C . n C 3 24 LEU 24 24 24 LEU LEU C . n C 3 25 ARG 25 25 25 ARG ARG C . n C 3 26 LYS 26 26 26 LYS LYS C . n D 3 1 SER 1 1 ? ? ? D . n D 3 2 SER 2 2 ? ? ? D . n D 3 3 SER 3 3 ? ? ? D . n D 3 4 GLN 4 4 ? ? ? D . n D 3 5 LYS 5 5 ? ? ? D . n D 3 6 LYS 6 6 ? ? ? D . n D 3 7 ALA 7 7 ? ? ? D . n D 3 8 GLY 8 8 ? ? ? D . n D 3 9 GLY 9 9 9 GLY GLY D . n D 3 10 LYS 10 10 10 LYS LYS D . n D 3 11 ALA 11 11 11 ALA ALA D . n D 3 12 GLY 12 12 12 GLY GLY D . n D 3 13 LYS 13 13 13 LYS LYS D . n D 3 14 PRO 14 14 14 PRO PRO D . n D 3 15 THR 15 15 15 THR THR D . n D 3 16 LYS 16 16 16 LYS LYS D . n D 3 17 ARG 17 17 17 ARG ARG D . n D 3 18 SER 18 18 18 SER SER D . n D 3 19 GLN 19 19 19 GLN GLN D . n D 3 20 ASN 20 20 20 ASN ASN D . n D 3 21 TYR 21 21 21 TYR TYR D . n D 3 22 ALA 22 22 22 ALA ALA D . n D 3 23 ALA 23 23 23 ALA ALA D . n D 3 24 LEU 24 24 24 LEU LEU D . n D 3 25 ARG 25 25 25 ARG ARG D . n D 3 26 LYS 26 26 26 LYS LYS D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 BR 1 1 1 BR BR A . F 5 HOH 1 2 2 HOH HOH A . F 5 HOH 2 3 3 HOH HOH A . F 5 HOH 3 4 4 HOH HOH A . F 5 HOH 4 5 5 HOH HOH A . G 5 HOH 1 8 8 HOH HOH B . H 5 HOH 1 27 6 HOH HOH D . H 5 HOH 2 28 7 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C LYS 13 ? CG ? C LYS 13 CG 2 1 Y 1 C LYS 13 ? CD ? C LYS 13 CD 3 1 Y 1 C LYS 13 ? CE ? C LYS 13 CE 4 1 Y 1 C LYS 13 ? NZ ? C LYS 13 NZ 5 1 Y 1 D LYS 10 ? CG ? D LYS 10 CG 6 1 Y 1 D LYS 10 ? CD ? D LYS 10 CD 7 1 Y 1 D LYS 10 ? CE ? D LYS 10 CE 8 1 Y 1 D LYS 10 ? NZ ? D LYS 10 NZ 9 1 Y 1 D LYS 16 ? CG ? D LYS 16 CG 10 1 Y 1 D LYS 16 ? CD ? D LYS 16 CD 11 1 Y 1 D LYS 16 ? CE ? D LYS 16 CE 12 1 Y 1 D LYS 16 ? NZ ? D LYS 16 NZ 13 1 Y 1 D LYS 26 ? CG ? D LYS 26 CG 14 1 Y 1 D LYS 26 ? CD ? D LYS 26 CD 15 1 Y 1 D LYS 26 ? CE ? D LYS 26 CE 16 1 Y 1 D LYS 26 ? NZ ? D LYS 26 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.19 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHARP phasing . ? 4 # _cell.entry_id 1XOK _cell.length_a 50.1 _cell.length_b 123.0 _cell.length_c 53.6 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1XOK _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1XOK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.3 _exptl_crystal.density_percent_sol 46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details ;2.45M ammonium sulfate, 0.01M magnesium acetate, 0.01M mes, 0.001M samarium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 1,2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD CUSTOM-MADE 2003-08-10 ? 2 CCD CUSTOM-MADE 2003-08-10 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M monochromator MAD x-ray 2 1 M monochromator 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91942 1.0 2 0.91997 1.0 3 0.92181 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'APS BEAMLINE 19-ID' APS 19-ID ? '0.91942, 0.91997, 0.92181' 2 SYNCHROTRON 'APS BEAMLINE 19-ID' APS 19-ID ? 0.91942 # _reflns.entry_id 1XOK _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 3.0 _reflns.d_resolution_low 99.0 _reflns.number_all 3508 _reflns.number_obs 3487 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.085 _reflns.pdbx_netI_over_sigmaI 25.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.9 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 3.0 _reflns_shell.d_res_low 3.19 _reflns_shell.percent_possible_all 98.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.405 _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 1XOK _refine.ls_number_reflns_obs 3236 _refine.ls_number_reflns_all 3237 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.001 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 99.97 _refine.ls_R_factor_obs 0.251 _refine.ls_R_factor_all 0.251 _refine.ls_R_factor_R_work 0.249 _refine.ls_R_factor_R_free 0.26888 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.2 _refine.ls_number_reflns_R_free 326 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.910 _refine.correlation_coeff_Fo_to_Fc_free 0.903 _refine.B_iso_mean 45.218 _refine.aniso_B[1][1] -3.42 _refine.aniso_B[2][2] 6.93 _refine.aniso_B[3][3] -3.51 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.467 _refine.overall_SU_ML 0.332 _refine.overall_SU_B 18.921 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 244 _refine_hist.pdbx_number_atoms_nucleic_acid 765 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 1017 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 1098 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.118 2.797 ? 1647 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 0.027 5.000 ? 31 'X-RAY DIFFRACTION' ? r_chiral_restr 0.091 0.200 ? 178 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 561 'X-RAY DIFFRACTION' ? r_nbd_refined 0.237 0.200 ? 472 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.202 0.200 ? 45 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.313 0.200 ? 47 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.307 0.200 ? 10 'X-RAY DIFFRACTION' ? r_mcbond_it 0.849 2.000 ? 164 'X-RAY DIFFRACTION' ? r_mcangle_it 1.761 4.000 ? 250 'X-RAY DIFFRACTION' ? r_scbond_it 1.392 4.000 ? 934 'X-RAY DIFFRACTION' ? r_scangle_it 2.229 6.000 ? 1397 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 3.00 _refine_ls_shell.d_res_low ? _refine_ls_shell.number_reflns_R_work 453 _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1XOK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1XOK _struct.title ;crystal structure of alfalfa mosaic virus RNA 3'UTR in complex with coat protein N terminal peptide ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XOK _struct_keywords.pdbx_keywords 'Viral protein/RNA' _struct_keywords.text 'protein-rna complex, alpha helix, atypical rna duplex, Viral protein-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP COAT_AMVYS P24264 3 1 ? ? 2 PDB 1XOK 1XOK 1 ? ? ? 3 PDB 1XOK 1XOK 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XOK C 1 ? 26 ? P24264 1 ? 26 ? 1 26 2 1 1XOK D 1 ? 26 ? P24264 1 ? 26 ? 1 26 3 2 1XOK A 1 ? 30 ? 1XOK 843 ? 872 ? 843 872 4 3 1XOK B 1 ? 9 ? 1XOK 873 ? 881 ? 873 881 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR C 15 ? LYS C 26 ? THR C 15 LYS C 26 1 ? 12 HELX_P HELX_P2 2 THR D 15 ? ARG D 25 ? THR D 15 ARG D 25 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? E BR . BR ? ? ? 1_555 A U 30 C5 ? ? A BR 1 A U 872 1_555 ? ? ? ? ? ? ? 2.043 ? ? hydrog1 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 844 A A 865 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog2 hydrog ? ? A U 2 O2 ? ? ? 1_555 A A 23 N6 ? ? A U 844 A A 865 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog3 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 846 A G 867 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 846 A G 867 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 846 A G 867 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 22 N1 ? ? A U 847 A A 864 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 22 N6 ? ? A U 847 A A 864 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 848 A G 863 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 848 A G 863 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 848 A G 863 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 20 N3 ? ? A A 849 A U 862 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 20 O4 ? ? A A 849 A U 862 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 19 N1 ? ? A U 850 A A 861 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 19 N6 ? ? A U 850 A A 861 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 18 N3 ? ? A G 851 A C 860 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 18 O2 ? ? A G 851 A C 860 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 851 A C 860 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 24 N3 ? ? ? 1_555 B A 6 N1 ? ? A U 866 B A 878 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog19 hydrog ? ? A U 24 O2 ? ? ? 1_555 B A 6 N6 ? ? A U 866 B A 878 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog20 hydrog ? ? A C 26 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 868 B G 880 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 26 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 868 B G 880 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 26 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 868 B G 880 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 27 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 869 B G 877 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 27 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 869 B G 877 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 27 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 869 B G 877 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 28 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 870 B G 876 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 28 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 870 B G 876 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 28 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 870 B G 876 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 29 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 871 B G 875 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 29 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 871 B G 875 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 29 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 871 B G 875 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 30 N3 ? ? ? 1_555 B A 2 N1 ? ? A U 872 B A 874 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 30 O4 ? ? ? 1_555 B A 2 N6 ? ? A U 872 B A 874 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BR _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE BR A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 C A 29 ? C A 871 . ? 1_555 ? 2 AC1 2 U A 30 ? U A 872 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O3'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 U _pdbx_validate_symm_contact.auth_seq_id_1 872 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O5'" _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 A _pdbx_validate_symm_contact.auth_seq_id_2 873 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_755 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O5'" A G 867 ? ? "C5'" A G 867 ? ? 1.340 1.420 -0.080 0.009 N 2 1 "O5'" A C 868 ? ? "C5'" A C 868 ? ? 1.362 1.420 -0.058 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A U 844 ? ? C4 A U 844 ? ? C5 A U 844 ? ? 118.25 114.60 3.65 0.60 N 2 1 "O5'" A U 847 ? ? "C5'" A U 847 ? ? "C4'" A U 847 ? ? 101.34 109.40 -8.06 0.80 N 3 1 "O4'" A U 847 ? ? "C1'" A U 847 ? ? N1 A U 847 ? ? 112.99 108.50 4.49 0.70 N 4 1 "O5'" A C 848 ? ? P A C 848 ? ? OP2 A C 848 ? ? 99.75 105.70 -5.95 0.90 N 5 1 "O5'" A C 848 ? ? "C5'" A C 848 ? ? "C4'" A C 848 ? ? 102.62 109.40 -6.78 0.80 N 6 1 "C4'" A C 848 ? ? "C3'" A C 848 ? ? "C2'" A C 848 ? ? 96.21 102.60 -6.39 1.00 N 7 1 "C4'" A U 862 ? ? "C3'" A U 862 ? ? "C2'" A U 862 ? ? 95.95 102.60 -6.65 1.00 N 8 1 "C1'" A G 863 ? ? "O4'" A G 863 ? ? "C4'" A G 863 ? ? 104.96 109.70 -4.74 0.70 N 9 1 N1 A G 863 ? ? C6 A G 863 ? ? O6 A G 863 ? ? 116.29 119.90 -3.61 0.60 N 10 1 "C3'" A C 871 ? ? "C2'" A C 871 ? ? "C1'" A C 871 ? ? 96.75 101.30 -4.55 0.70 N 11 1 "O4'" B G 875 ? ? "C1'" B G 875 ? ? N9 B G 875 ? ? 113.16 108.50 4.66 0.70 N 12 1 "C3'" B A 878 ? ? "O3'" B A 878 ? ? P B U 879 ? ? 127.27 119.70 7.57 1.20 Y 13 1 "C3'" B U 879 ? ? "O3'" B U 879 ? ? P B G 880 ? ? 128.45 119.70 8.75 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA C 23 ? ? -65.18 -70.22 2 1 ALA D 11 ? ? -106.55 -68.14 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 36.6597 _pdbx_refine_tls.origin_y 13.0441 _pdbx_refine_tls.origin_z 22.9456 _pdbx_refine_tls.T[1][1] 0.1429 _pdbx_refine_tls.T[2][2] 0.0288 _pdbx_refine_tls.T[3][3] 0.4331 _pdbx_refine_tls.T[1][2] 0.0080 _pdbx_refine_tls.T[1][3] -0.0732 _pdbx_refine_tls.T[2][3] 0.0016 _pdbx_refine_tls.L[1][1] 7.6947 _pdbx_refine_tls.L[2][2] 2.0249 _pdbx_refine_tls.L[3][3] 17.2649 _pdbx_refine_tls.L[1][2] 1.2288 _pdbx_refine_tls.L[1][3] 1.2560 _pdbx_refine_tls.L[2][3] -2.5260 _pdbx_refine_tls.S[1][1] 0.0890 _pdbx_refine_tls.S[2][2] 0.3884 _pdbx_refine_tls.S[3][3] -0.4775 _pdbx_refine_tls.S[1][2] 0.3297 _pdbx_refine_tls.S[1][3] 0.7699 _pdbx_refine_tls.S[2][3] -0.0349 _pdbx_refine_tls.S[2][1] 0.2161 _pdbx_refine_tls.S[3][1] -0.0891 _pdbx_refine_tls.S[3][2] -0.1665 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 D 27 D 28 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 B 8 B 8 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 A 2 A 5 ? . . . . ? 'X-RAY DIFFRACTION' 4 1 A 1 A 1 ? . . . . ? 'X-RAY DIFFRACTION' 5 1 D 9 D 26 ? . . . . ? 'X-RAY DIFFRACTION' 6 1 B 873 B 881 ? . . . . ? 'X-RAY DIFFRACTION' 7 1 C 12 C 26 ? . . . . ? 'X-RAY DIFFRACTION' 8 1 A 843 A 872 ? . . . . ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A A 853 ? A A 11 2 1 Y 1 A A 854 ? A A 12 3 1 Y 1 A A 855 ? A A 13 4 1 Y 1 C SER 1 ? C SER 1 5 1 Y 1 C SER 2 ? C SER 2 6 1 Y 1 C SER 3 ? C SER 3 7 1 Y 1 C GLN 4 ? C GLN 4 8 1 Y 1 C LYS 5 ? C LYS 5 9 1 Y 1 C LYS 6 ? C LYS 6 10 1 Y 1 C ALA 7 ? C ALA 7 11 1 Y 1 C GLY 8 ? C GLY 8 12 1 Y 1 C GLY 9 ? C GLY 9 13 1 Y 1 C LYS 10 ? C LYS 10 14 1 Y 1 C ALA 11 ? C ALA 11 15 1 Y 1 D SER 1 ? D SER 1 16 1 Y 1 D SER 2 ? D SER 2 17 1 Y 1 D SER 3 ? D SER 3 18 1 Y 1 D GLN 4 ? D GLN 4 19 1 Y 1 D LYS 5 ? D LYS 5 20 1 Y 1 D LYS 6 ? D LYS 6 21 1 Y 1 D ALA 7 ? D ALA 7 22 1 Y 1 D GLY 8 ? D GLY 8 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 BR BR BR N N 95 C OP3 O N N 96 C P P N N 97 C OP1 O N N 98 C OP2 O N N 99 C "O5'" O N N 100 C "C5'" C N N 101 C "C4'" C N R 102 C "O4'" O N N 103 C "C3'" C N S 104 C "O3'" O N N 105 C "C2'" C N R 106 C "O2'" O N N 107 C "C1'" C N R 108 C N1 N N N 109 C C2 C N N 110 C O2 O N N 111 C N3 N N N 112 C C4 C N N 113 C N4 N N N 114 C C5 C N N 115 C C6 C N N 116 C HOP3 H N N 117 C HOP2 H N N 118 C "H5'" H N N 119 C "H5''" H N N 120 C "H4'" H N N 121 C "H3'" H N N 122 C "HO3'" H N N 123 C "H2'" H N N 124 C "HO2'" H N N 125 C "H1'" H N N 126 C H41 H N N 127 C H42 H N N 128 C H5 H N N 129 C H6 H N N 130 G OP3 O N N 131 G P P N N 132 G OP1 O N N 133 G OP2 O N N 134 G "O5'" O N N 135 G "C5'" C N N 136 G "C4'" C N R 137 G "O4'" O N N 138 G "C3'" C N S 139 G "O3'" O N N 140 G "C2'" C N R 141 G "O2'" O N N 142 G "C1'" C N R 143 G N9 N Y N 144 G C8 C Y N 145 G N7 N Y N 146 G C5 C Y N 147 G C6 C N N 148 G O6 O N N 149 G N1 N N N 150 G C2 C N N 151 G N2 N N N 152 G N3 N N N 153 G C4 C Y N 154 G HOP3 H N N 155 G HOP2 H N N 156 G "H5'" H N N 157 G "H5''" H N N 158 G "H4'" H N N 159 G "H3'" H N N 160 G "HO3'" H N N 161 G "H2'" H N N 162 G "HO2'" H N N 163 G "H1'" H N N 164 G H8 H N N 165 G H1 H N N 166 G H21 H N N 167 G H22 H N N 168 GLN N N N N 169 GLN CA C N S 170 GLN C C N N 171 GLN O O N N 172 GLN CB C N N 173 GLN CG C N N 174 GLN CD C N N 175 GLN OE1 O N N 176 GLN NE2 N N N 177 GLN OXT O N N 178 GLN H H N N 179 GLN H2 H N N 180 GLN HA H N N 181 GLN HB2 H N N 182 GLN HB3 H N N 183 GLN HG2 H N N 184 GLN HG3 H N N 185 GLN HE21 H N N 186 GLN HE22 H N N 187 GLN HXT H N N 188 GLY N N N N 189 GLY CA C N N 190 GLY C C N N 191 GLY O O N N 192 GLY OXT O N N 193 GLY H H N N 194 GLY H2 H N N 195 GLY HA2 H N N 196 GLY HA3 H N N 197 GLY HXT H N N 198 HOH O O N N 199 HOH H1 H N N 200 HOH H2 H N N 201 LEU N N N N 202 LEU CA C N S 203 LEU C C N N 204 LEU O O N N 205 LEU CB C N N 206 LEU CG C N N 207 LEU CD1 C N N 208 LEU CD2 C N N 209 LEU OXT O N N 210 LEU H H N N 211 LEU H2 H N N 212 LEU HA H N N 213 LEU HB2 H N N 214 LEU HB3 H N N 215 LEU HG H N N 216 LEU HD11 H N N 217 LEU HD12 H N N 218 LEU HD13 H N N 219 LEU HD21 H N N 220 LEU HD22 H N N 221 LEU HD23 H N N 222 LEU HXT H N N 223 LYS N N N N 224 LYS CA C N S 225 LYS C C N N 226 LYS O O N N 227 LYS CB C N N 228 LYS CG C N N 229 LYS CD C N N 230 LYS CE C N N 231 LYS NZ N N N 232 LYS OXT O N N 233 LYS H H N N 234 LYS H2 H N N 235 LYS HA H N N 236 LYS HB2 H N N 237 LYS HB3 H N N 238 LYS HG2 H N N 239 LYS HG3 H N N 240 LYS HD2 H N N 241 LYS HD3 H N N 242 LYS HE2 H N N 243 LYS HE3 H N N 244 LYS HZ1 H N N 245 LYS HZ2 H N N 246 LYS HZ3 H N N 247 LYS HXT H N N 248 PRO N N N N 249 PRO CA C N S 250 PRO C C N N 251 PRO O O N N 252 PRO CB C N N 253 PRO CG C N N 254 PRO CD C N N 255 PRO OXT O N N 256 PRO H H N N 257 PRO HA H N N 258 PRO HB2 H N N 259 PRO HB3 H N N 260 PRO HG2 H N N 261 PRO HG3 H N N 262 PRO HD2 H N N 263 PRO HD3 H N N 264 PRO HXT H N N 265 SER N N N N 266 SER CA C N S 267 SER C C N N 268 SER O O N N 269 SER CB C N N 270 SER OG O N N 271 SER OXT O N N 272 SER H H N N 273 SER H2 H N N 274 SER HA H N N 275 SER HB2 H N N 276 SER HB3 H N N 277 SER HG H N N 278 SER HXT H N N 279 THR N N N N 280 THR CA C N S 281 THR C C N N 282 THR O O N N 283 THR CB C N R 284 THR OG1 O N N 285 THR CG2 C N N 286 THR OXT O N N 287 THR H H N N 288 THR H2 H N N 289 THR HA H N N 290 THR HB H N N 291 THR HG1 H N N 292 THR HG21 H N N 293 THR HG22 H N N 294 THR HG23 H N N 295 THR HXT H N N 296 TYR N N N N 297 TYR CA C N S 298 TYR C C N N 299 TYR O O N N 300 TYR CB C N N 301 TYR CG C Y N 302 TYR CD1 C Y N 303 TYR CD2 C Y N 304 TYR CE1 C Y N 305 TYR CE2 C Y N 306 TYR CZ C Y N 307 TYR OH O N N 308 TYR OXT O N N 309 TYR H H N N 310 TYR H2 H N N 311 TYR HA H N N 312 TYR HB2 H N N 313 TYR HB3 H N N 314 TYR HD1 H N N 315 TYR HD2 H N N 316 TYR HE1 H N N 317 TYR HE2 H N N 318 TYR HH H N N 319 TYR HXT H N N 320 U OP3 O N N 321 U P P N N 322 U OP1 O N N 323 U OP2 O N N 324 U "O5'" O N N 325 U "C5'" C N N 326 U "C4'" C N R 327 U "O4'" O N N 328 U "C3'" C N S 329 U "O3'" O N N 330 U "C2'" C N R 331 U "O2'" O N N 332 U "C1'" C N R 333 U N1 N N N 334 U C2 C N N 335 U O2 O N N 336 U N3 N N N 337 U C4 C N N 338 U O4 O N N 339 U C5 C N N 340 U C6 C N N 341 U HOP3 H N N 342 U HOP2 H N N 343 U "H5'" H N N 344 U "H5''" H N N 345 U "H4'" H N N 346 U "H3'" H N N 347 U "HO3'" H N N 348 U "H2'" H N N 349 U "HO2'" H N N 350 U "H1'" H N N 351 U H3 H N N 352 U H5 H N N 353 U H6 H N N 354 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 C OP3 P sing N N 94 C OP3 HOP3 sing N N 95 C P OP1 doub N N 96 C P OP2 sing N N 97 C P "O5'" sing N N 98 C OP2 HOP2 sing N N 99 C "O5'" "C5'" sing N N 100 C "C5'" "C4'" sing N N 101 C "C5'" "H5'" sing N N 102 C "C5'" "H5''" sing N N 103 C "C4'" "O4'" sing N N 104 C "C4'" "C3'" sing N N 105 C "C4'" "H4'" sing N N 106 C "O4'" "C1'" sing N N 107 C "C3'" "O3'" sing N N 108 C "C3'" "C2'" sing N N 109 C "C3'" "H3'" sing N N 110 C "O3'" "HO3'" sing N N 111 C "C2'" "O2'" sing N N 112 C "C2'" "C1'" sing N N 113 C "C2'" "H2'" sing N N 114 C "O2'" "HO2'" sing N N 115 C "C1'" N1 sing N N 116 C "C1'" "H1'" sing N N 117 C N1 C2 sing N N 118 C N1 C6 sing N N 119 C C2 O2 doub N N 120 C C2 N3 sing N N 121 C N3 C4 doub N N 122 C C4 N4 sing N N 123 C C4 C5 sing N N 124 C N4 H41 sing N N 125 C N4 H42 sing N N 126 C C5 C6 doub N N 127 C C5 H5 sing N N 128 C C6 H6 sing N N 129 G OP3 P sing N N 130 G OP3 HOP3 sing N N 131 G P OP1 doub N N 132 G P OP2 sing N N 133 G P "O5'" sing N N 134 G OP2 HOP2 sing N N 135 G "O5'" "C5'" sing N N 136 G "C5'" "C4'" sing N N 137 G "C5'" "H5'" sing N N 138 G "C5'" "H5''" sing N N 139 G "C4'" "O4'" sing N N 140 G "C4'" "C3'" sing N N 141 G "C4'" "H4'" sing N N 142 G "O4'" "C1'" sing N N 143 G "C3'" "O3'" sing N N 144 G "C3'" "C2'" sing N N 145 G "C3'" "H3'" sing N N 146 G "O3'" "HO3'" sing N N 147 G "C2'" "O2'" sing N N 148 G "C2'" "C1'" sing N N 149 G "C2'" "H2'" sing N N 150 G "O2'" "HO2'" sing N N 151 G "C1'" N9 sing N N 152 G "C1'" "H1'" sing N N 153 G N9 C8 sing Y N 154 G N9 C4 sing Y N 155 G C8 N7 doub Y N 156 G C8 H8 sing N N 157 G N7 C5 sing Y N 158 G C5 C6 sing N N 159 G C5 C4 doub Y N 160 G C6 O6 doub N N 161 G C6 N1 sing N N 162 G N1 C2 sing N N 163 G N1 H1 sing N N 164 G C2 N2 sing N N 165 G C2 N3 doub N N 166 G N2 H21 sing N N 167 G N2 H22 sing N N 168 G N3 C4 sing N N 169 GLN N CA sing N N 170 GLN N H sing N N 171 GLN N H2 sing N N 172 GLN CA C sing N N 173 GLN CA CB sing N N 174 GLN CA HA sing N N 175 GLN C O doub N N 176 GLN C OXT sing N N 177 GLN CB CG sing N N 178 GLN CB HB2 sing N N 179 GLN CB HB3 sing N N 180 GLN CG CD sing N N 181 GLN CG HG2 sing N N 182 GLN CG HG3 sing N N 183 GLN CD OE1 doub N N 184 GLN CD NE2 sing N N 185 GLN NE2 HE21 sing N N 186 GLN NE2 HE22 sing N N 187 GLN OXT HXT sing N N 188 GLY N CA sing N N 189 GLY N H sing N N 190 GLY N H2 sing N N 191 GLY CA C sing N N 192 GLY CA HA2 sing N N 193 GLY CA HA3 sing N N 194 GLY C O doub N N 195 GLY C OXT sing N N 196 GLY OXT HXT sing N N 197 HOH O H1 sing N N 198 HOH O H2 sing N N 199 LEU N CA sing N N 200 LEU N H sing N N 201 LEU N H2 sing N N 202 LEU CA C sing N N 203 LEU CA CB sing N N 204 LEU CA HA sing N N 205 LEU C O doub N N 206 LEU C OXT sing N N 207 LEU CB CG sing N N 208 LEU CB HB2 sing N N 209 LEU CB HB3 sing N N 210 LEU CG CD1 sing N N 211 LEU CG CD2 sing N N 212 LEU CG HG sing N N 213 LEU CD1 HD11 sing N N 214 LEU CD1 HD12 sing N N 215 LEU CD1 HD13 sing N N 216 LEU CD2 HD21 sing N N 217 LEU CD2 HD22 sing N N 218 LEU CD2 HD23 sing N N 219 LEU OXT HXT sing N N 220 LYS N CA sing N N 221 LYS N H sing N N 222 LYS N H2 sing N N 223 LYS CA C sing N N 224 LYS CA CB sing N N 225 LYS CA HA sing N N 226 LYS C O doub N N 227 LYS C OXT sing N N 228 LYS CB CG sing N N 229 LYS CB HB2 sing N N 230 LYS CB HB3 sing N N 231 LYS CG CD sing N N 232 LYS CG HG2 sing N N 233 LYS CG HG3 sing N N 234 LYS CD CE sing N N 235 LYS CD HD2 sing N N 236 LYS CD HD3 sing N N 237 LYS CE NZ sing N N 238 LYS CE HE2 sing N N 239 LYS CE HE3 sing N N 240 LYS NZ HZ1 sing N N 241 LYS NZ HZ2 sing N N 242 LYS NZ HZ3 sing N N 243 LYS OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TYR N CA sing N N 291 TYR N H sing N N 292 TYR N H2 sing N N 293 TYR CA C sing N N 294 TYR CA CB sing N N 295 TYR CA HA sing N N 296 TYR C O doub N N 297 TYR C OXT sing N N 298 TYR CB CG sing N N 299 TYR CB HB2 sing N N 300 TYR CB HB3 sing N N 301 TYR CG CD1 doub Y N 302 TYR CG CD2 sing Y N 303 TYR CD1 CE1 sing Y N 304 TYR CD1 HD1 sing N N 305 TYR CD2 CE2 doub Y N 306 TYR CD2 HD2 sing N N 307 TYR CE1 CZ doub Y N 308 TYR CE1 HE1 sing N N 309 TYR CE2 CZ sing Y N 310 TYR CE2 HE2 sing N N 311 TYR CZ OH sing N N 312 TYR OH HH sing N N 313 TYR OXT HXT sing N N 314 U OP3 P sing N N 315 U OP3 HOP3 sing N N 316 U P OP1 doub N N 317 U P OP2 sing N N 318 U P "O5'" sing N N 319 U OP2 HOP2 sing N N 320 U "O5'" "C5'" sing N N 321 U "C5'" "C4'" sing N N 322 U "C5'" "H5'" sing N N 323 U "C5'" "H5''" sing N N 324 U "C4'" "O4'" sing N N 325 U "C4'" "C3'" sing N N 326 U "C4'" "H4'" sing N N 327 U "O4'" "C1'" sing N N 328 U "C3'" "O3'" sing N N 329 U "C3'" "C2'" sing N N 330 U "C3'" "H3'" sing N N 331 U "O3'" "HO3'" sing N N 332 U "C2'" "O2'" sing N N 333 U "C2'" "C1'" sing N N 334 U "C2'" "H2'" sing N N 335 U "O2'" "HO2'" sing N N 336 U "C1'" N1 sing N N 337 U "C1'" "H1'" sing N N 338 U N1 C2 sing N N 339 U N1 C6 sing N N 340 U C2 O2 doub N N 341 U C2 N3 sing N N 342 U N3 C4 sing N N 343 U N3 H3 sing N N 344 U C4 O4 doub N N 345 U C4 C5 sing N N 346 U C5 C6 doub N N 347 U C5 H5 sing N N 348 U C6 H6 sing N N 349 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1XOK 'double helix' 1XOK 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 2 1_555 A A 23 1_555 -0.216 -1.070 0.180 -8.757 -12.050 -159.818 1 A_U844:A865_A A 844 ? A 865 ? 21 2 1 A C 4 1_555 A G 25 1_555 -0.040 -0.257 -0.949 18.013 -14.217 1.246 2 A_C846:G867_A A 846 ? A 867 ? 19 1 1 A U 5 1_555 A A 22 1_555 0.009 -0.251 0.071 0.326 -9.746 -5.957 3 A_U847:A864_A A 847 ? A 864 ? 20 1 1 A C 6 1_555 A G 21 1_555 0.497 -0.518 0.009 0.712 -15.112 -3.778 4 A_C848:G863_A A 848 ? A 863 ? 19 1 1 A A 7 1_555 A U 20 1_555 0.328 -0.366 -0.018 -5.797 -20.293 2.056 5 A_A849:U862_A A 849 ? A 862 ? 20 1 1 A U 8 1_555 A A 19 1_555 0.315 -0.371 0.789 -1.694 -4.072 3.792 6 A_U850:A861_A A 850 ? A 861 ? 20 1 1 A G 9 1_555 A C 18 1_555 -0.286 -0.326 0.202 -0.323 -12.730 1.089 7 A_G851:C860_A A 851 ? A 860 ? 19 1 1 A U 24 1_555 B A 6 1_555 -0.099 -1.417 -0.239 -16.552 -17.173 -164.150 8 A_U866:A878_B A 866 ? B 878 ? 21 2 1 A C 26 1_555 B G 8 1_555 -0.162 -0.029 -0.756 26.357 -7.702 1.917 9 A_C868:G880_B A 868 ? B 880 ? 19 1 1 A C 27 1_555 B G 5 1_555 0.516 -0.439 -0.235 8.617 -13.104 -3.075 10 A_C869:G877_B A 869 ? B 877 ? 19 1 1 A C 28 1_555 B G 4 1_555 0.526 -0.144 0.040 2.623 -6.469 4.184 11 A_C870:G876_B A 870 ? B 876 ? 19 1 1 A C 29 1_555 B G 3 1_555 0.859 -0.131 -0.709 14.449 -25.093 10.995 12 A_C871:G875_B A 871 ? B 875 ? 19 1 1 A U 30 1_555 B A 2 1_555 -0.149 -0.157 0.726 -12.957 -2.288 0.692 13 A_U872:A874_B A 872 ? B 874 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 2 1_555 A A 23 1_555 A C 4 1_555 A G 25 1_555 2.649 -0.953 -1.849 76.147 146.101 -139.196 0.771 1.172 -1.867 -73.470 38.292 -174.699 1 AA_U844C846:G867A865_AA A 844 ? A 865 ? A 846 ? A 867 ? 1 A C 4 1_555 A G 25 1_555 A U 5 1_555 A A 22 1_555 1.867 -1.424 3.403 -2.312 14.107 50.408 -2.528 -2.269 2.854 16.192 2.654 52.268 2 AA_C846U847:A864G867_AA A 846 ? A 867 ? A 847 ? A 864 ? 1 A U 5 1_555 A A 22 1_555 A C 6 1_555 A G 21 1_555 0.709 -1.331 3.102 2.693 10.644 33.363 -3.642 -0.814 2.616 17.945 -4.540 35.074 3 AA_U847C848:G863A864_AA A 847 ? A 864 ? A 848 ? A 863 ? 1 A C 6 1_555 A G 21 1_555 A A 7 1_555 A U 20 1_555 -0.126 -1.351 3.248 -1.213 14.633 32.358 -4.176 0.044 2.434 24.730 2.050 35.453 4 AA_C848A849:U862G863_AA A 848 ? A 863 ? A 849 ? A 862 ? 1 A A 7 1_555 A U 20 1_555 A U 8 1_555 A A 19 1_555 -0.229 -1.554 3.159 -9.876 3.582 33.709 -3.073 -1.019 2.933 5.998 16.538 35.263 5 AA_A849U850:A861U862_AA A 849 ? A 862 ? A 850 ? A 861 ? 1 A U 8 1_555 A A 19 1_555 A G 9 1_555 A C 18 1_555 -0.125 -1.501 2.821 5.156 13.552 25.731 -5.124 1.073 1.769 27.797 -10.576 29.475 6 AA_U850G851:C860A861_AA A 850 ? A 861 ? A 851 ? A 860 ? 1 A U 24 1_555 B A 6 1_555 A C 26 1_555 B G 8 1_555 2.174 -0.972 -1.595 82.920 144.187 -153.902 0.644 0.996 -1.609 -72.245 41.547 -176.920 7 AA_U866C868:G880A878_BB A 866 ? B 878 ? A 868 ? B 880 ? 1 A C 26 1_555 B G 8 1_555 A C 27 1_555 B G 5 1_555 1.488 -1.238 3.418 0.099 14.025 53.306 -2.178 -1.605 3.031 15.334 -0.108 54.989 8 AA_C868C869:G877G880_BB A 868 ? B 880 ? A 869 ? B 877 ? 1 A C 27 1_555 B G 5 1_555 A C 28 1_555 B G 4 1_555 0.303 -1.909 3.324 -1.659 6.029 34.901 -3.991 -0.733 2.947 9.954 2.739 35.440 9 AA_C869C870:G876G877_BB A 869 ? B 877 ? A 870 ? B 876 ? 1 A C 28 1_555 B G 4 1_555 A C 29 1_555 B G 3 1_555 0.741 -1.741 2.956 12.460 4.423 26.194 -4.318 1.002 2.701 9.062 -25.528 29.290 10 AA_C870C871:G875G876_BB A 870 ? B 876 ? A 871 ? B 875 ? 1 A C 29 1_555 B G 3 1_555 A U 30 1_555 B A 2 1_555 -0.694 -2.221 3.785 -15.322 17.176 25.745 -6.523 -1.297 2.065 31.659 28.242 34.403 11 AA_C871U872:A874G875_BB A 871 ? B 875 ? A 872 ? B 874 ? # _atom_sites.entry_id 1XOK _atom_sites.fract_transf_matrix[1][1] 0.019962 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008128 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018656 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_