data_1XV0 # _entry.id 1XV0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XV0 pdb_00001xv0 10.2210/pdb1xv0/pdb RCSB RCSB030794 ? ? WWPDB D_1000030794 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XV0 _pdbx_database_status.recvd_initial_deposition_date 2004-10-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, G.' 1 'Znosko, B.M.' 2 'Kennedy, S.D.' 3 'Krugh, T.R.' 4 'Turner, D.H.' 5 # _citation.id primary _citation.title 'Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 2845 _citation.page_last 2856 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15723528 _citation.pdbx_database_id_DOI 10.1021/bi048079y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, G.' 1 ? primary 'Znosko, B.M.' 2 ? primary 'Kennedy, S.D.' 3 ? primary 'Krugh, T.R.' 4 ? primary 'Turner, D.H.' 5 ? # _cell.entry_id 1XV0 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XV0 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'" 3272.996 1 ? ? ? ? 2 polymer syn "5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3'" 3183.991 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGUGGAGGCU GGUGGAGGCU A ? 2 polyribonucleotide no yes 'GCCGAAGCC(P5P)' GCCGAAGCCA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 G n 1 5 G n 1 6 A n 1 7 G n 1 8 G n 1 9 C n 1 10 U n 2 1 G n 2 2 C n 2 3 C n 2 4 G n 2 5 A n 2 6 A n 2 7 G n 2 8 C n 2 9 C n 2 10 P5P n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1XV0 1XV0 ? ? ? 2 2 PDB 1XV0 1XV0 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XV0 A 1 ? 10 ? 1XV0 1 ? 10 ? 1 10 2 2 1XV0 B 1 ? 10 ? 1XV0 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 P5P 'RNA linking' n ;PURINE RIBOSIDE-5'-MONOPHOSPHATE ; ? 'C10 H13 N4 O7 P' 332.207 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D TOCSY' 2 1 1 '2D NOESY' 3 1 2 DQF-COSY 4 1 2 '2D NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 303 1 5.9 ? atm K 2 273 1 5.9 ? atm K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9 10% D2O ; _pdbx_nmr_sample_details.solvent_system NMR # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian INOVA 500 2 ? Varian INOVA 600 # _pdbx_nmr_ensemble.entry_id 1XV0 _pdbx_nmr_ensemble.conformers_calculated_total_number 40 _pdbx_nmr_ensemble.conformers_submitted_total_number 33 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1XV0 _pdbx_nmr_representative.conformer_id 17 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Felix 2000 'data analysis' ? 1 Discover ? 'structure solution' ? 2 Discover ? refinement ? 3 Amber ? 'structure solution' ? 4 # _exptl.entry_id 1XV0 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1XV0 _struct.title ;Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XV0 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Thermodynamics and Structure, Base stacking and Hydrogen bonding, 3-GA motif, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B C 9 "O3'" ? ? ? 1_555 B P5P 10 P ? ? B C 19 B P5P 20 1_555 ? ? ? ? ? ? ? 1.614 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 1 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 1 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 1 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 2 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 2 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 2 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B G 7 O6 ? ? A U 3 B G 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A U 3 O2 ? ? ? 1_555 B G 7 N1 ? ? A U 3 B G 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B A 6 N7 ? ? A G 4 B A 16 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog10 hydrog ? ? A G 4 N3 ? ? ? 1_555 B A 6 N6 ? ? A G 4 B A 16 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A A 6 N6 ? ? ? 1_555 B G 4 N3 ? ? A A 6 B G 14 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog12 hydrog ? ? A A 6 N7 ? ? ? 1_555 B G 4 N2 ? ? A A 6 B G 14 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog13 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 7 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 7 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 7 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 8 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 8 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 8 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 9 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 9 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 9 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1XV0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1XV0 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 U 10 10 10 U U A . n B 2 1 G 1 11 11 G G B . n B 2 2 C 2 12 12 C C B . n B 2 3 C 3 13 13 C C B . n B 2 4 G 4 14 14 G G B . n B 2 5 A 5 15 15 A A B . n B 2 6 A 6 16 16 A A B . n B 2 7 G 7 17 17 G G B . n B 2 8 C 8 18 18 C C B . n B 2 9 C 9 19 19 C C B . n B 2 10 P5P 10 20 20 P5P P5P B . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id P5P _pdbx_struct_mod_residue.label_seq_id 10 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id P5P _pdbx_struct_mod_residue.auth_seq_id 20 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details ;PURINE RIBOSIDE-5'-MONOPHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-09 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.20 108.50 5.70 0.70 N 2 1 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.58 108.50 5.08 0.70 N 3 1 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.09 108.50 4.59 0.70 N 4 1 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.20 108.50 4.70 0.70 N 5 1 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 113.26 108.50 4.76 0.70 N 6 2 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.73 108.50 4.23 0.70 N 7 2 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.34 108.50 5.84 0.70 N 8 2 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.55 108.50 5.05 0.70 N 9 2 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.94 108.50 4.44 0.70 N 10 2 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.39 108.50 4.89 0.70 N 11 2 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.72 108.50 4.22 0.70 N 12 3 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.71 108.50 4.21 0.70 N 13 3 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.34 108.50 5.84 0.70 N 14 3 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.49 108.50 4.99 0.70 N 15 3 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.93 108.50 4.43 0.70 N 16 3 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.41 108.50 4.91 0.70 N 17 3 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.75 108.50 4.25 0.70 N 18 4 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.08 108.50 5.58 0.70 N 19 4 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.53 108.50 5.03 0.70 N 20 4 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.05 108.50 4.55 0.70 N 21 4 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.60 108.50 5.10 0.70 N 22 5 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.10 108.50 5.60 0.70 N 23 5 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.55 108.50 5.05 0.70 N 24 5 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.91 108.50 4.41 0.70 N 25 5 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.24 108.50 4.74 0.70 N 26 6 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 113.92 108.50 5.42 0.70 N 27 6 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.62 108.50 5.12 0.70 N 28 6 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.04 108.50 4.54 0.70 N 29 6 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 114.04 108.50 5.54 0.70 N 30 6 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.71 108.50 4.21 0.70 N 31 7 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.10 108.50 5.60 0.70 N 32 7 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.47 108.50 4.97 0.70 N 33 7 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.92 108.50 4.42 0.70 N 34 7 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.23 108.50 4.73 0.70 N 35 8 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.72 108.50 4.22 0.70 N 36 8 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.46 108.50 5.96 0.70 N 37 8 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.64 108.50 5.14 0.70 N 38 8 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.19 108.50 4.69 0.70 N 39 8 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.75 108.50 5.25 0.70 N 40 8 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.71 108.50 4.21 0.70 N 41 9 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 113.98 108.50 5.48 0.70 N 42 9 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.48 108.50 4.98 0.70 N 43 9 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.91 108.50 4.41 0.70 N 44 9 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.98 108.50 5.48 0.70 N 45 10 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 113.78 108.50 5.28 0.70 N 46 10 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.61 108.50 5.11 0.70 N 47 10 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.88 108.50 4.38 0.70 N 48 10 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.41 108.50 4.91 0.70 N 49 11 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 113.98 108.50 5.48 0.70 N 50 11 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.65 108.50 5.15 0.70 N 51 11 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.02 108.50 4.52 0.70 N 52 11 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.80 108.50 5.30 0.70 N 53 12 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.19 108.50 5.69 0.70 N 54 12 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 112.77 108.50 4.27 0.70 N 55 12 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 112.88 108.50 4.38 0.70 N 56 12 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.20 108.50 4.70 0.70 N 57 12 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.96 108.50 4.46 0.70 N 58 13 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.78 108.50 4.28 0.70 N 59 13 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.16 108.50 5.66 0.70 N 60 13 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.53 108.50 5.03 0.70 N 61 13 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.02 108.50 4.52 0.70 N 62 13 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.64 108.50 5.14 0.70 N 63 14 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.29 108.50 5.79 0.70 N 64 14 "C3'" A G 4 ? ? "O3'" A G 4 ? ? P A G 5 ? ? 127.17 119.70 7.47 1.20 Y 65 14 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.49 108.50 4.99 0.70 N 66 14 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.97 108.50 4.47 0.70 N 67 14 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.98 108.50 4.48 0.70 N 68 15 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.17 108.50 5.67 0.70 N 69 15 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.35 108.50 4.85 0.70 N 70 15 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.09 108.50 4.59 0.70 N 71 15 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.06 108.50 4.56 0.70 N 72 16 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.43 108.50 5.93 0.70 N 73 16 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.43 108.50 4.93 0.70 N 74 16 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.95 108.50 4.45 0.70 N 75 16 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.10 108.50 4.60 0.70 N 76 17 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.08 108.50 5.58 0.70 N 77 17 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 112.87 108.50 4.37 0.70 N 78 17 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.93 108.50 4.43 0.70 N 79 17 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.47 108.50 4.97 0.70 N 80 18 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.41 108.50 5.91 0.70 N 81 18 "C3'" A G 4 ? ? "O3'" A G 4 ? ? P A G 5 ? ? 127.19 119.70 7.49 1.20 Y 82 18 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.60 108.50 5.10 0.70 N 83 18 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.02 108.50 4.52 0.70 N 84 18 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 114.12 108.50 5.62 0.70 N 85 18 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.79 108.50 4.29 0.70 N 86 19 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.03 108.50 5.53 0.70 N 87 19 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.28 108.50 4.78 0.70 N 88 19 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.07 108.50 4.57 0.70 N 89 19 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.91 108.50 4.41 0.70 N 90 20 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.98 108.50 4.48 0.70 N 91 20 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.34 108.50 5.84 0.70 N 92 20 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.38 108.50 4.88 0.70 N 93 20 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.00 108.50 4.50 0.70 N 94 20 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.63 108.50 5.13 0.70 N 95 20 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.89 108.50 4.39 0.70 N 96 21 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.32 108.50 5.82 0.70 N 97 21 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 112.73 108.50 4.23 0.70 N 98 21 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.12 108.50 4.62 0.70 N 99 21 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.80 108.50 4.30 0.70 N 100 22 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.42 108.50 5.92 0.70 N 101 22 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 112.84 108.50 4.34 0.70 N 102 22 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.01 108.50 4.51 0.70 N 103 22 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.49 108.50 4.99 0.70 N 104 22 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.80 108.50 4.30 0.70 N 105 23 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.39 108.50 5.89 0.70 N 106 23 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 112.81 108.50 4.31 0.70 N 107 23 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.00 108.50 4.50 0.70 N 108 23 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.15 108.50 4.65 0.70 N 109 24 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 113.89 108.50 5.39 0.70 N 110 24 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.99 108.50 4.49 0.70 N 111 24 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.07 108.50 4.57 0.70 N 112 25 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.27 108.50 5.77 0.70 N 113 25 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.43 108.50 4.93 0.70 N 114 25 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.63 108.50 5.13 0.70 N 115 25 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.65 108.50 5.15 0.70 N 116 25 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.73 108.50 4.23 0.70 N 117 26 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.22 108.50 5.72 0.70 N 118 26 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.15 108.50 4.65 0.70 N 119 26 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.00 108.50 4.50 0.70 N 120 26 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.26 108.50 4.76 0.70 N 121 27 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.10 108.50 5.60 0.70 N 122 27 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.42 108.50 4.92 0.70 N 123 27 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.95 108.50 4.45 0.70 N 124 27 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.08 108.50 4.58 0.70 N 125 28 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.02 108.50 5.52 0.70 N 126 28 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.54 108.50 5.04 0.70 N 127 28 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.09 108.50 4.59 0.70 N 128 28 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.57 108.50 5.07 0.70 N 129 28 "O4'" B C 19 ? ? "C1'" B C 19 ? ? N1 B C 19 ? ? 112.71 108.50 4.21 0.70 N 130 29 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.13 108.50 5.63 0.70 N 131 29 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 112.74 108.50 4.24 0.70 N 132 29 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 112.86 108.50 4.36 0.70 N 133 29 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.90 108.50 4.40 0.70 N 134 29 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.45 108.50 4.95 0.70 N 135 30 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.17 108.50 5.67 0.70 N 136 30 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.30 108.50 4.80 0.70 N 137 30 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.93 108.50 4.43 0.70 N 138 30 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.18 108.50 4.68 0.70 N 139 31 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.76 108.50 4.26 0.70 N 140 31 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.38 108.50 5.88 0.70 N 141 31 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.56 108.50 5.06 0.70 N 142 31 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.03 108.50 4.53 0.70 N 143 31 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.68 108.50 5.18 0.70 N 144 32 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.02 108.50 5.52 0.70 N 145 32 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 113.25 108.50 4.75 0.70 N 146 32 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.60 108.50 5.10 0.70 N 147 32 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.15 108.50 4.65 0.70 N 148 32 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 112.99 108.50 4.49 0.70 N 149 33 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.44 108.50 5.94 0.70 N 150 33 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 113.46 108.50 4.96 0.70 N 151 33 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.85 108.50 4.35 0.70 N 152 33 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 113.45 108.50 4.95 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 4 ? ? 0.057 'SIDE CHAIN' 2 1 G A 5 ? ? 0.057 'SIDE CHAIN' 3 2 G A 5 ? ? 0.055 'SIDE CHAIN' 4 2 A B 16 ? ? 0.083 'SIDE CHAIN' 5 3 G A 5 ? ? 0.055 'SIDE CHAIN' 6 3 A B 16 ? ? 0.083 'SIDE CHAIN' 7 4 A B 16 ? ? 0.051 'SIDE CHAIN' 8 5 G A 5 ? ? 0.063 'SIDE CHAIN' 9 6 G A 5 ? ? 0.061 'SIDE CHAIN' 10 7 G A 5 ? ? 0.060 'SIDE CHAIN' 11 7 A B 16 ? ? 0.082 'SIDE CHAIN' 12 8 A B 16 ? ? 0.059 'SIDE CHAIN' 13 10 G A 5 ? ? 0.063 'SIDE CHAIN' 14 10 G B 14 ? ? 0.075 'SIDE CHAIN' 15 10 A B 16 ? ? 0.069 'SIDE CHAIN' 16 10 G B 17 ? ? 0.055 'SIDE CHAIN' 17 11 G A 5 ? ? 0.086 'SIDE CHAIN' 18 11 A B 16 ? ? 0.059 'SIDE CHAIN' 19 11 G B 17 ? ? 0.064 'SIDE CHAIN' 20 13 G A 5 ? ? 0.059 'SIDE CHAIN' 21 16 A B 16 ? ? 0.052 'SIDE CHAIN' 22 17 G A 5 ? ? 0.066 'SIDE CHAIN' 23 17 G B 11 ? ? 0.057 'SIDE CHAIN' 24 18 A B 16 ? ? 0.061 'SIDE CHAIN' 25 22 G A 5 ? ? 0.049 'SIDE CHAIN' 26 22 G B 11 ? ? 0.056 'SIDE CHAIN' 27 22 A B 15 ? ? 0.050 'SIDE CHAIN' 28 23 G B 11 ? ? 0.056 'SIDE CHAIN' 29 23 G B 14 ? ? 0.055 'SIDE CHAIN' 30 23 A B 16 ? ? 0.063 'SIDE CHAIN' 31 24 G A 5 ? ? 0.072 'SIDE CHAIN' 32 24 G B 11 ? ? 0.058 'SIDE CHAIN' 33 26 G A 5 ? ? 0.059 'SIDE CHAIN' 34 26 G B 14 ? ? 0.056 'SIDE CHAIN' 35 26 A B 16 ? ? 0.067 'SIDE CHAIN' 36 29 G B 11 ? ? 0.060 'SIDE CHAIN' 37 29 A B 16 ? ? 0.050 'SIDE CHAIN' 38 30 G A 5 ? ? 0.079 'SIDE CHAIN' 39 30 G B 14 ? ? 0.065 'SIDE CHAIN' 40 31 G A 5 ? ? 0.052 'SIDE CHAIN' 41 31 A B 16 ? ? 0.062 'SIDE CHAIN' 42 32 G A 5 ? ? 0.092 'SIDE CHAIN' 43 33 G A 5 ? ? 0.099 'SIDE CHAIN' 44 33 A B 15 ? ? 0.058 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1XV0 'double helix' 1XV0 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 9 1_555 -0.686 -0.188 -0.231 -10.570 -10.606 -0.668 1 A_G1:C19_B A 1 ? B 19 ? 19 1 1 A G 2 1_555 B C 8 1_555 -0.315 -0.036 -0.211 -11.736 -14.339 0.658 2 A_G2:C18_B A 2 ? B 18 ? 19 1 1 A U 3 1_555 B G 7 1_555 2.176 -0.299 0.126 -5.534 -12.996 5.074 3 A_U3:G17_B A 3 ? B 17 ? 28 1 1 A G 4 1_555 B A 6 1_555 6.887 -4.109 -0.494 -4.687 -10.432 -5.895 4 A_G4:A16_B A 4 ? B 16 ? 11 10 1 B G 4 1_555 A A 6 1_555 6.873 -4.451 0.168 2.490 -8.033 -6.916 5 B_G14:A6_A B 14 ? A 6 ? 11 10 1 B C 3 1_555 A G 7 1_555 0.559 -0.107 -0.080 -3.759 -7.189 0.970 6 B_C13:G7_A B 13 ? A 7 ? 19 1 1 B C 2 1_555 A G 8 1_555 0.620 -0.133 0.023 -10.940 -7.267 -0.142 7 B_C12:G8_A B 12 ? A 8 ? 19 1 1 B G 1 1_555 A C 9 1_555 -0.700 -0.151 -0.438 -16.916 -12.732 1.003 8 B_G11:C9_A B 11 ? A 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 9 1_555 A G 2 1_555 B C 8 1_555 0.121 -1.640 3.334 1.184 5.535 32.328 -3.835 -0.015 3.022 9.847 -2.107 32.807 1 AA_G1G2:C18C19_BB A 1 ? B 19 ? A 2 ? B 18 ? 1 A G 2 1_555 B C 8 1_555 A U 3 1_555 B G 7 1_555 0.501 -1.251 3.187 0.220 1.922 41.000 -1.986 -0.692 3.130 2.742 -0.315 41.044 2 AA_G2U3:G17C18_BB A 2 ? B 18 ? A 3 ? B 17 ? 1 A U 3 1_555 B G 7 1_555 A G 4 1_555 B A 6 1_555 -0.983 -0.996 3.501 8.111 0.715 56.568 -1.083 1.497 3.331 0.750 -8.509 57.103 3 AA_U3G4:A16G17_BB A 3 ? B 17 ? A 4 ? B 16 ? 1 A G 4 1_555 B A 6 1_555 B G 4 1_555 A A 6 1_555 -0.101 7.267 0.042 167.246 55.633 -165.854 -3.632 -0.056 -0.229 -27.821 83.637 -179.539 4 AB_G4G14:A6A16_AB A 4 ? B 16 ? B 14 ? A 6 ? 1 B G 4 1_555 A A 6 1_555 B C 3 1_555 A G 7 1_555 0.370 1.144 -3.299 -2.755 -7.666 -53.365 -1.728 0.575 -3.098 8.480 -3.048 -53.938 5 BB_G14C13:G7A6_AA B 14 ? A 6 ? B 13 ? A 7 ? 1 B C 3 1_555 A G 7 1_555 B C 2 1_555 A G 8 1_555 -0.206 1.746 -3.112 -2.430 -4.592 -29.001 -4.331 0.070 -2.815 9.078 -4.803 -29.452 6 BB_C13C12:G8G7_AA B 13 ? A 7 ? B 12 ? A 8 ? 1 B C 2 1_555 A G 8 1_555 B G 1 1_555 A C 9 1_555 0.046 1.696 -3.179 0.472 -1.537 -36.157 -2.939 0.010 -3.107 2.475 0.760 -36.191 7 BB_C12G11:C9G8_AA B 12 ? A 8 ? B 11 ? A 9 ? #