data_1YWD # _entry.id 1YWD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YWD pdb_00001ywd 10.2210/pdb1ywd/pdb RCSB RCSB031995 ? ? WWPDB D_1000031995 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-10-04 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 5 'Structure model' 1 4 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_entry_details 8 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 4 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 5 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 1YWD _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.recvd_initial_deposition_date 2005-02-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YWA . unspecified PDB 1YWB . unspecified PDB 1YWC . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Maes, E.M.' 1 'Weichsel, A.' 2 'Roberts, S.A.' 3 'Montfort, W.R.' 4 # _citation.id primary _citation.title 'Ultrahigh Resolution Structures of Nitrophorin 4: Heme Distortion in Ferrous CO and NO Complexes' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 12690 _citation.page_last 12699 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16171383 _citation.pdbx_database_id_DOI 10.1021/bi0506573 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Maes, E.M.' 1 ? primary 'Roberts, S.A.' 2 ? primary 'Weichsel, A.' 3 ? primary 'Montfort, W.R.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'nitrophorin 4' 20292.664 1 ? ? ? ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 water nat water 18.015 298 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name NP4 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ACTKNAIAQTGFNKDKYFNGDVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLG KYTANFKKVDKNGNVKVAVTAGNYYTFTVMYADDSSALIHTCLHKGNKDLGDLYAVLNRNKDAAAGDKVKSAVSAATLEF SKFISTKENNCAYDNDSLKSLLTK ; _entity_poly.pdbx_seq_one_letter_code_can ;ACTKNAIAQTGFNKDKYFNGDVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLG KYTANFKKVDKNGNVKVAVTAGNYYTFTVMYADDSSALIHTCLHKGNKDLGDLYAVLNRNKDAAAGDKVKSAVSAATLEF SKFISTKENNCAYDNDSLKSLLTK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 CYS n 1 3 THR n 1 4 LYS n 1 5 ASN n 1 6 ALA n 1 7 ILE n 1 8 ALA n 1 9 GLN n 1 10 THR n 1 11 GLY n 1 12 PHE n 1 13 ASN n 1 14 LYS n 1 15 ASP n 1 16 LYS n 1 17 TYR n 1 18 PHE n 1 19 ASN n 1 20 GLY n 1 21 ASP n 1 22 VAL n 1 23 TRP n 1 24 TYR n 1 25 VAL n 1 26 THR n 1 27 ASP n 1 28 TYR n 1 29 LEU n 1 30 ASP n 1 31 LEU n 1 32 GLU n 1 33 PRO n 1 34 ASP n 1 35 ASP n 1 36 VAL n 1 37 PRO n 1 38 LYS n 1 39 ARG n 1 40 TYR n 1 41 CYS n 1 42 ALA n 1 43 ALA n 1 44 LEU n 1 45 ALA n 1 46 ALA n 1 47 GLY n 1 48 THR n 1 49 ALA n 1 50 SER n 1 51 GLY n 1 52 LYS n 1 53 LEU n 1 54 LYS n 1 55 GLU n 1 56 ALA n 1 57 LEU n 1 58 TYR n 1 59 HIS n 1 60 TYR n 1 61 ASP n 1 62 PRO n 1 63 LYS n 1 64 THR n 1 65 GLN n 1 66 ASP n 1 67 THR n 1 68 PHE n 1 69 TYR n 1 70 ASP n 1 71 VAL n 1 72 SER n 1 73 GLU n 1 74 LEU n 1 75 GLN n 1 76 VAL n 1 77 GLU n 1 78 SER n 1 79 LEU n 1 80 GLY n 1 81 LYS n 1 82 TYR n 1 83 THR n 1 84 ALA n 1 85 ASN n 1 86 PHE n 1 87 LYS n 1 88 LYS n 1 89 VAL n 1 90 ASP n 1 91 LYS n 1 92 ASN n 1 93 GLY n 1 94 ASN n 1 95 VAL n 1 96 LYS n 1 97 VAL n 1 98 ALA n 1 99 VAL n 1 100 THR n 1 101 ALA n 1 102 GLY n 1 103 ASN n 1 104 TYR n 1 105 TYR n 1 106 THR n 1 107 PHE n 1 108 THR n 1 109 VAL n 1 110 MET n 1 111 TYR n 1 112 ALA n 1 113 ASP n 1 114 ASP n 1 115 SER n 1 116 SER n 1 117 ALA n 1 118 LEU n 1 119 ILE n 1 120 HIS n 1 121 THR n 1 122 CYS n 1 123 LEU n 1 124 HIS n 1 125 LYS n 1 126 GLY n 1 127 ASN n 1 128 LYS n 1 129 ASP n 1 130 LEU n 1 131 GLY n 1 132 ASP n 1 133 LEU n 1 134 TYR n 1 135 ALA n 1 136 VAL n 1 137 LEU n 1 138 ASN n 1 139 ARG n 1 140 ASN n 1 141 LYS n 1 142 ASP n 1 143 ALA n 1 144 ALA n 1 145 ALA n 1 146 GLY n 1 147 ASP n 1 148 LYS n 1 149 VAL n 1 150 LYS n 1 151 SER n 1 152 ALA n 1 153 VAL n 1 154 SER n 1 155 ALA n 1 156 ALA n 1 157 THR n 1 158 LEU n 1 159 GLU n 1 160 PHE n 1 161 SER n 1 162 LYS n 1 163 PHE n 1 164 ILE n 1 165 SER n 1 166 THR n 1 167 LYS n 1 168 GLU n 1 169 ASN n 1 170 ASN n 1 171 CYS n 1 172 ALA n 1 173 TYR n 1 174 ASP n 1 175 ASN n 1 176 ASP n 1 177 SER n 1 178 LEU n 1 179 LYS n 1 180 SER n 1 181 LEU n 1 182 LEU n 1 183 THR n 1 184 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Rhodnius _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rhodnius prolixus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 13249 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET17B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 TRP 23 23 23 TRP TRP A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 CYS 41 41 41 CYS CYS A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 HIS 59 59 59 HIS HIS A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 MET 110 110 110 MET MET A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 CYS 122 122 122 CYS CYS A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 TYR 134 134 134 TYR TYR A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 ASP 142 142 142 ASP ASP A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 ASP 147 147 147 ASP ASP A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 SER 154 154 154 SER SER A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 THR 157 157 157 THR THR A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 SER 161 161 161 SER SER A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 PHE 163 163 163 PHE PHE A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 SER 165 165 165 SER SER A . n A 1 166 THR 166 166 166 THR THR A . n A 1 167 LYS 167 167 167 LYS LYS A . n A 1 168 GLU 168 168 168 GLU GLU A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 ASN 170 170 170 ASN ASN A . n A 1 171 CYS 171 171 171 CYS CYS A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 TYR 173 173 173 TYR TYR A . n A 1 174 ASP 174 174 174 ASP ASP A . n A 1 175 ASN 175 175 175 ASN ASN A . n A 1 176 ASP 176 176 176 ASP ASP A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 LYS 179 179 179 LYS LYS A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 THR 183 183 183 THR THR A . n A 1 184 LYS 184 184 184 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 185 185 HEM HEM A . C 3 HOH 1 186 186 HOH HOH A . C 3 HOH 2 201 201 HOH HOH A . C 3 HOH 3 202 202 HOH HOH A . C 3 HOH 4 203 203 HOH HOH A . C 3 HOH 5 204 204 HOH HOH A . C 3 HOH 6 205 205 HOH HOH A . C 3 HOH 7 206 206 HOH HOH A . C 3 HOH 8 207 207 HOH HOH A . C 3 HOH 9 208 208 HOH HOH A . C 3 HOH 10 209 209 HOH HOH A . C 3 HOH 11 210 210 HOH HOH A . C 3 HOH 12 211 211 HOH HOH A . C 3 HOH 13 212 212 HOH HOH A . C 3 HOH 14 213 213 HOH HOH A . C 3 HOH 15 214 214 HOH HOH A . C 3 HOH 16 215 215 HOH HOH A . C 3 HOH 17 216 216 HOH HOH A . C 3 HOH 18 217 217 HOH HOH A . C 3 HOH 19 218 218 HOH HOH A . C 3 HOH 20 219 219 HOH HOH A . C 3 HOH 21 220 220 HOH HOH A . C 3 HOH 22 221 221 HOH HOH A . C 3 HOH 23 222 222 HOH HOH A . C 3 HOH 24 223 223 HOH HOH A . C 3 HOH 25 224 224 HOH HOH A . C 3 HOH 26 225 225 HOH HOH A . C 3 HOH 27 226 226 HOH HOH A . C 3 HOH 28 227 227 HOH HOH A . C 3 HOH 29 228 228 HOH HOH A . C 3 HOH 30 229 229 HOH HOH A . C 3 HOH 31 230 230 HOH HOH A . C 3 HOH 32 231 231 HOH HOH A . C 3 HOH 33 232 232 HOH HOH A . C 3 HOH 34 233 233 HOH HOH A . C 3 HOH 35 234 234 HOH HOH A . C 3 HOH 36 235 235 HOH HOH A . C 3 HOH 37 236 236 HOH HOH A . C 3 HOH 38 237 237 HOH HOH A . C 3 HOH 39 238 238 HOH HOH A . C 3 HOH 40 239 239 HOH HOH A . C 3 HOH 41 240 240 HOH HOH A . C 3 HOH 42 241 241 HOH HOH A . C 3 HOH 43 242 242 HOH HOH A . C 3 HOH 44 243 243 HOH HOH A . C 3 HOH 45 244 244 HOH HOH A . C 3 HOH 46 245 245 HOH HOH A . C 3 HOH 47 246 246 HOH HOH A . C 3 HOH 48 247 247 HOH HOH A . C 3 HOH 49 248 248 HOH HOH A . C 3 HOH 50 249 249 HOH HOH A . C 3 HOH 51 250 250 HOH HOH A . C 3 HOH 52 251 251 HOH HOH A . C 3 HOH 53 252 252 HOH HOH A . C 3 HOH 54 253 253 HOH HOH A . C 3 HOH 55 254 254 HOH HOH A . C 3 HOH 56 255 255 HOH HOH A . C 3 HOH 57 256 256 HOH HOH A . C 3 HOH 58 257 257 HOH HOH A . C 3 HOH 59 258 258 HOH HOH A . C 3 HOH 60 259 259 HOH HOH A . C 3 HOH 61 260 260 HOH HOH A . C 3 HOH 62 261 261 HOH HOH A . C 3 HOH 63 262 262 HOH HOH A . C 3 HOH 64 263 263 HOH HOH A . C 3 HOH 65 264 264 HOH HOH A . C 3 HOH 66 265 265 HOH HOH A . C 3 HOH 67 266 266 HOH HOH A . C 3 HOH 68 267 267 HOH HOH A . C 3 HOH 69 268 268 HOH HOH A . C 3 HOH 70 269 269 HOH HOH A . C 3 HOH 71 270 270 HOH HOH A . C 3 HOH 72 271 271 HOH HOH A . C 3 HOH 73 272 272 HOH HOH A . C 3 HOH 74 273 273 HOH HOH A . C 3 HOH 75 274 274 HOH HOH A . C 3 HOH 76 275 275 HOH HOH A . C 3 HOH 77 276 276 HOH HOH A . C 3 HOH 78 277 277 HOH HOH A . C 3 HOH 79 278 278 HOH HOH A . C 3 HOH 80 279 279 HOH HOH A . C 3 HOH 81 280 280 HOH HOH A . C 3 HOH 82 281 281 HOH HOH A . C 3 HOH 83 282 282 HOH HOH A . C 3 HOH 84 283 283 HOH HOH A . C 3 HOH 85 284 284 HOH HOH A . C 3 HOH 86 285 285 HOH HOH A . C 3 HOH 87 286 286 HOH HOH A . C 3 HOH 88 287 287 HOH HOH A . C 3 HOH 89 288 288 HOH HOH A . C 3 HOH 90 289 289 HOH HOH A . C 3 HOH 91 290 290 HOH HOH A . C 3 HOH 92 291 291 HOH HOH A . C 3 HOH 93 292 292 HOH HOH A . C 3 HOH 94 293 293 HOH HOH A . C 3 HOH 95 294 294 HOH HOH A . C 3 HOH 96 295 295 HOH HOH A . C 3 HOH 97 296 296 HOH HOH A . C 3 HOH 98 297 297 HOH HOH A . C 3 HOH 99 298 298 HOH HOH A . C 3 HOH 100 299 299 HOH HOH A . C 3 HOH 101 300 300 HOH HOH A . C 3 HOH 102 301 301 HOH HOH A . C 3 HOH 103 302 302 HOH HOH A . C 3 HOH 104 303 303 HOH HOH A . C 3 HOH 105 304 304 HOH HOH A . C 3 HOH 106 305 305 HOH HOH A . C 3 HOH 107 306 306 HOH HOH A . C 3 HOH 108 307 307 HOH HOH A . C 3 HOH 109 308 308 HOH HOH A . C 3 HOH 110 309 309 HOH HOH A . C 3 HOH 111 310 310 HOH HOH A . C 3 HOH 112 311 311 HOH HOH A . C 3 HOH 113 312 312 HOH HOH A . C 3 HOH 114 313 313 HOH HOH A . C 3 HOH 115 314 314 HOH HOH A . C 3 HOH 116 315 315 HOH HOH A . C 3 HOH 117 316 316 HOH HOH A . C 3 HOH 118 317 317 HOH HOH A . C 3 HOH 119 318 318 HOH HOH A . C 3 HOH 120 319 319 HOH HOH A . C 3 HOH 121 320 320 HOH HOH A . C 3 HOH 122 321 321 HOH HOH A . C 3 HOH 123 322 322 HOH HOH A . C 3 HOH 124 323 323 HOH HOH A . C 3 HOH 125 324 324 HOH HOH A . C 3 HOH 126 325 325 HOH HOH A . C 3 HOH 127 326 326 HOH HOH A . C 3 HOH 128 327 327 HOH HOH A . C 3 HOH 129 328 328 HOH HOH A . C 3 HOH 130 329 329 HOH HOH A . C 3 HOH 131 330 330 HOH HOH A . C 3 HOH 132 331 331 HOH HOH A . C 3 HOH 133 332 332 HOH HOH A . C 3 HOH 134 333 333 HOH HOH A . C 3 HOH 135 334 334 HOH HOH A . C 3 HOH 136 335 335 HOH HOH A . C 3 HOH 137 336 336 HOH HOH A . C 3 HOH 138 337 337 HOH HOH A . C 3 HOH 139 338 338 HOH HOH A . C 3 HOH 140 339 339 HOH HOH A . C 3 HOH 141 340 340 HOH HOH A . C 3 HOH 142 341 341 HOH HOH A . C 3 HOH 143 342 342 HOH HOH A . C 3 HOH 144 343 343 HOH HOH A . C 3 HOH 145 344 344 HOH HOH A . C 3 HOH 146 345 345 HOH HOH A . C 3 HOH 147 346 346 HOH HOH A . C 3 HOH 148 347 347 HOH HOH A . C 3 HOH 149 348 348 HOH HOH A . C 3 HOH 150 349 349 HOH HOH A . C 3 HOH 151 350 350 HOH HOH A . C 3 HOH 152 351 351 HOH HOH A . C 3 HOH 153 352 352 HOH HOH A . C 3 HOH 154 353 353 HOH HOH A . C 3 HOH 155 354 354 HOH HOH A . C 3 HOH 156 355 355 HOH HOH A . C 3 HOH 157 356 356 HOH HOH A . C 3 HOH 158 357 357 HOH HOH A . C 3 HOH 159 358 358 HOH HOH A . C 3 HOH 160 359 359 HOH HOH A . C 3 HOH 161 360 360 HOH HOH A . C 3 HOH 162 361 361 HOH HOH A . C 3 HOH 163 362 362 HOH HOH A . C 3 HOH 164 363 363 HOH HOH A . C 3 HOH 165 364 364 HOH HOH A . C 3 HOH 166 365 365 HOH HOH A . C 3 HOH 167 366 366 HOH HOH A . C 3 HOH 168 367 367 HOH HOH A . C 3 HOH 169 368 368 HOH HOH A . C 3 HOH 170 369 369 HOH HOH A . C 3 HOH 171 370 370 HOH HOH A . C 3 HOH 172 371 371 HOH HOH A . C 3 HOH 173 372 372 HOH HOH A . C 3 HOH 174 373 373 HOH HOH A . C 3 HOH 175 374 374 HOH HOH A . C 3 HOH 176 375 375 HOH HOH A . C 3 HOH 177 376 376 HOH HOH A . C 3 HOH 178 377 377 HOH HOH A . C 3 HOH 179 378 378 HOH HOH A . C 3 HOH 180 379 379 HOH HOH A . C 3 HOH 181 380 380 HOH HOH A . C 3 HOH 182 381 381 HOH HOH A . C 3 HOH 183 382 382 HOH HOH A . C 3 HOH 184 383 383 HOH HOH A . C 3 HOH 185 384 384 HOH HOH A . C 3 HOH 186 385 385 HOH HOH A . C 3 HOH 187 386 386 HOH HOH A . C 3 HOH 188 387 387 HOH HOH A . C 3 HOH 189 388 388 HOH HOH A . C 3 HOH 190 389 389 HOH HOH A . C 3 HOH 191 390 390 HOH HOH A . C 3 HOH 192 391 391 HOH HOH A . C 3 HOH 193 392 392 HOH HOH A . C 3 HOH 194 393 393 HOH HOH A . C 3 HOH 195 394 394 HOH HOH A . C 3 HOH 196 395 395 HOH HOH A . C 3 HOH 197 396 396 HOH HOH A . C 3 HOH 198 397 397 HOH HOH A . C 3 HOH 199 398 398 HOH HOH A . C 3 HOH 200 399 399 HOH HOH A . C 3 HOH 201 400 400 HOH HOH A . C 3 HOH 202 401 401 HOH HOH A . C 3 HOH 203 402 402 HOH HOH A . C 3 HOH 204 403 403 HOH HOH A . C 3 HOH 205 404 404 HOH HOH A . C 3 HOH 206 405 405 HOH HOH A . C 3 HOH 207 406 406 HOH HOH A . C 3 HOH 208 407 407 HOH HOH A . C 3 HOH 209 408 408 HOH HOH A . C 3 HOH 210 409 409 HOH HOH A . C 3 HOH 211 410 410 HOH HOH A . C 3 HOH 212 411 411 HOH HOH A . C 3 HOH 213 412 412 HOH HOH A . C 3 HOH 214 413 413 HOH HOH A . C 3 HOH 215 414 414 HOH HOH A . C 3 HOH 216 415 415 HOH HOH A . C 3 HOH 217 416 416 HOH HOH A . C 3 HOH 218 417 417 HOH HOH A . C 3 HOH 219 418 418 HOH HOH A . C 3 HOH 220 419 419 HOH HOH A . C 3 HOH 221 420 420 HOH HOH A . C 3 HOH 222 421 421 HOH HOH A . C 3 HOH 223 422 422 HOH HOH A . C 3 HOH 224 423 423 HOH HOH A . C 3 HOH 225 424 424 HOH HOH A . C 3 HOH 226 425 425 HOH HOH A . C 3 HOH 227 426 426 HOH HOH A . C 3 HOH 228 427 427 HOH HOH A . C 3 HOH 229 428 428 HOH HOH A . C 3 HOH 230 429 429 HOH HOH A . C 3 HOH 231 430 430 HOH HOH A . C 3 HOH 232 431 431 HOH HOH A . C 3 HOH 233 432 432 HOH HOH A . C 3 HOH 234 433 433 HOH HOH A . C 3 HOH 235 434 434 HOH HOH A . C 3 HOH 236 435 435 HOH HOH A . C 3 HOH 237 436 436 HOH HOH A . C 3 HOH 238 437 437 HOH HOH A . C 3 HOH 239 438 438 HOH HOH A . C 3 HOH 240 439 439 HOH HOH A . C 3 HOH 241 440 440 HOH HOH A . C 3 HOH 242 441 441 HOH HOH A . C 3 HOH 243 442 442 HOH HOH A . C 3 HOH 244 443 443 HOH HOH A . C 3 HOH 245 444 444 HOH HOH A . C 3 HOH 246 445 445 HOH HOH A . C 3 HOH 247 446 446 HOH HOH A . C 3 HOH 248 447 447 HOH HOH A . C 3 HOH 249 448 448 HOH HOH A . C 3 HOH 250 449 449 HOH HOH A . C 3 HOH 251 450 450 HOH HOH A . C 3 HOH 252 451 451 HOH HOH A . C 3 HOH 253 452 452 HOH HOH A . C 3 HOH 254 453 453 HOH HOH A . C 3 HOH 255 454 454 HOH HOH A . C 3 HOH 256 455 455 HOH HOH A . C 3 HOH 257 456 456 HOH HOH A . C 3 HOH 258 457 457 HOH HOH A . C 3 HOH 259 458 458 HOH HOH A . C 3 HOH 260 459 459 HOH HOH A . C 3 HOH 261 460 460 HOH HOH A . C 3 HOH 262 461 461 HOH HOH A . C 3 HOH 263 462 462 HOH HOH A . C 3 HOH 264 463 463 HOH HOH A . C 3 HOH 265 464 464 HOH HOH A . C 3 HOH 266 465 465 HOH HOH A . C 3 HOH 267 466 466 HOH HOH A . C 3 HOH 268 467 467 HOH HOH A . C 3 HOH 269 468 468 HOH HOH A . C 3 HOH 270 469 469 HOH HOH A . C 3 HOH 271 470 470 HOH HOH A . C 3 HOH 272 471 471 HOH HOH A . C 3 HOH 273 472 472 HOH HOH A . C 3 HOH 274 473 473 HOH HOH A . C 3 HOH 275 474 474 HOH HOH A . C 3 HOH 276 475 475 HOH HOH A . C 3 HOH 277 476 476 HOH HOH A . C 3 HOH 278 477 477 HOH HOH A . C 3 HOH 279 478 478 HOH HOH A . C 3 HOH 280 479 479 HOH HOH A . C 3 HOH 281 480 480 HOH HOH A . C 3 HOH 282 481 481 HOH HOH A . C 3 HOH 283 482 482 HOH HOH A . C 3 HOH 284 483 483 HOH HOH A . C 3 HOH 285 484 484 HOH HOH A . C 3 HOH 286 485 485 HOH HOH A . C 3 HOH 287 486 486 HOH HOH A . C 3 HOH 288 487 487 HOH HOH A . C 3 HOH 289 488 488 HOH HOH A . C 3 HOH 290 489 489 HOH HOH A . C 3 HOH 291 490 490 HOH HOH A . C 3 HOH 292 491 491 HOH HOH A . C 3 HOH 293 492 492 HOH HOH A . C 3 HOH 294 493 493 HOH HOH A . C 3 HOH 295 494 494 HOH HOH A . C 3 HOH 296 495 495 HOH HOH A . C 3 HOH 297 496 496 HOH HOH A . C 3 HOH 298 497 497 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal d*TREK 'data reduction' . ? 1 SHELXL-97 refinement . ? 2 d*TREK 'data scaling' . ? 3 # _cell.entry_id 1YWD _cell.length_a 70.063 _cell.length_b 42.905 _cell.length_c 52.272 _cell.angle_alpha 90.00 _cell.angle_beta 94.37 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YWD _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.cell_setting monoclinic _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YWD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 36.27 _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '2.8 M ammonium phosphate, pH 7.5, VAPOR DIFFUSION, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-02-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7510 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.7510 # _reflns.entry_id 1YWD _reflns.observed_criterion_sigma_F 0. _reflns.observed_criterion_sigma_I 0. _reflns.d_resolution_high 1.08 _reflns.d_resolution_low 30. _reflns.number_all 64299 _reflns.number_obs 64299 _reflns.percent_possible_obs 99. _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.052 _reflns.pdbx_netI_over_sigmaI 9.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.08 _reflns_shell.d_res_low 1.12 _reflns_shell.percent_possible_all 99 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.228 _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 6266 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YWD _refine.ls_d_res_high 1.08 _refine.ls_d_res_low 10.0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 64231 _refine.ls_number_reflns_obs 64231 _refine.ls_number_reflns_R_free 3221 _refine.ls_percent_reflns_obs 99 _refine.ls_R_factor_all 0.141 _refine.ls_R_factor_obs 0.141 _refine.ls_R_factor_R_work 0.14 _refine.ls_R_factor_R_free 0.17 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'starting model 1D2U' _refine.pdbx_starting_model 'PDB ID 1D2U' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model 'individual anisotropic thermal parameters' _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1481 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 300 _refine_hist.number_atoms_total 1824 _refine_hist.d_res_high 1.08 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d .014 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d .035 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1YWD _struct.title '1.08 A Structure of Ferrous NP4 (aquo complex)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YWD _struct_keywords.pdbx_keywords 'LIGAND BINDING PROTEIN, BLOOD CLOTTING' _struct_keywords.text 'ferrous heme; lipocalin fold; beta barrel, LIGAND BINDING PROTEIN, BLOOD CLOTTING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code NP4_RHOPR _struct_ref.pdbx_db_accession Q94734 _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_seq_one_letter_code ;ACTKNAIAQTGFNKDKYFNGDVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLG KYTANFKKVDKNGNVKVAVTAGNYYTFTVMYADDSSALIHTCLHKGNKDLGDLYAVLNRNKDAAAGDKVKSAVSAATLEF SKFISTKENNCAYDNDSLKSLLTK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YWD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 184 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q94734 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 205 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 184 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 13 ? PHE A 18 ? ASN A 13 PHE A 18 1 ? 6 HELX_P HELX_P2 2 GLY A 146 ? ALA A 156 ? GLY A 146 ALA A 156 1 ? 11 HELX_P HELX_P3 3 GLU A 159 ? PHE A 163 ? GLU A 159 PHE A 163 5 ? 5 HELX_P HELX_P4 4 ASP A 174 ? LEU A 182 ? ASP A 174 LEU A 182 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 122 SG ? ? A CYS 2 A CYS 122 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf2 disulf ? ? A CYS 41 SG A ? ? 1_555 A CYS 171 SG A ? A CYS 41 A CYS 171 1_555 ? ? ? ? ? ? ? 2.017 ? ? disulf3 disulf ? ? A CYS 41 SG B ? ? 1_555 A CYS 171 SG B ? A CYS 41 A CYS 171 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc1 metalc ? ? A HIS 59 NE2 ? ? ? 1_555 B HEM . FE ? ? A HIS 59 A HEM 185 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc2 metalc ? ? B HEM . FE ? ? ? 1_555 C HOH . O ? ? A HEM 185 A HOH 186 1_555 ? ? ? ? ? ? ? 2.202 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 59 ? A HIS 59 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NA ? B HEM . ? A HEM 185 ? 1_555 91.9 ? 2 NE2 ? A HIS 59 ? A HIS 59 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NB ? B HEM . ? A HEM 185 ? 1_555 95.0 ? 3 NA ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NB ? B HEM . ? A HEM 185 ? 1_555 90.8 ? 4 NE2 ? A HIS 59 ? A HIS 59 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NC ? B HEM . ? A HEM 185 ? 1_555 94.3 ? 5 NA ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NC ? B HEM . ? A HEM 185 ? 1_555 173.6 ? 6 NB ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 NC ? B HEM . ? A HEM 185 ? 1_555 90.0 ? 7 NE2 ? A HIS 59 ? A HIS 59 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 ND ? B HEM . ? A HEM 185 ? 1_555 93.4 ? 8 NA ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 ND ? B HEM . ? A HEM 185 ? 1_555 88.3 ? 9 NB ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 ND ? B HEM . ? A HEM 185 ? 1_555 171.5 ? 10 NC ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 ND ? B HEM . ? A HEM 185 ? 1_555 90.0 ? 11 NE2 ? A HIS 59 ? A HIS 59 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 O ? C HOH . ? A HOH 186 ? 1_555 179.0 ? 12 NA ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 O ? C HOH . ? A HOH 186 ? 1_555 87.2 ? 13 NB ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 O ? C HOH . ? A HOH 186 ? 1_555 85.1 ? 14 NC ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 O ? C HOH . ? A HOH 186 ? 1_555 86.6 ? 15 ND ? B HEM . ? A HEM 185 ? 1_555 FE ? B HEM . ? A HEM 185 ? 1_555 O ? C HOH . ? A HOH 186 ? 1_555 86.5 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 2 ? CYS A 122 ? CYS A 2 ? 1_555 CYS A 122 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 41 A CYS A 171 A CYS A 41 ? 1_555 CYS A 171 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 41 B CYS A 171 B CYS A 41 ? 1_555 CYS A 171 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 95 ? VAL A 97 ? VAL A 95 VAL A 97 A 2 LYS A 81 ? VAL A 89 ? LYS A 81 VAL A 89 A 3 THR A 67 ? SER A 78 ? THR A 67 SER A 78 A 4 LYS A 52 ? TYR A 60 ? LYS A 52 TYR A 60 A 5 CYS A 41 ? ALA A 49 ? CYS A 41 ALA A 49 A 6 VAL A 22 ? ASP A 30 ? VAL A 22 ASP A 30 A 7 ILE A 164 ? SER A 165 ? ILE A 164 SER A 165 B 1 VAL A 95 ? VAL A 97 ? VAL A 95 VAL A 97 B 2 LYS A 81 ? VAL A 89 ? LYS A 81 VAL A 89 B 3 ASN A 103 ? ALA A 112 ? ASN A 103 ALA A 112 B 4 SER A 116 ? LYS A 125 ? SER A 116 LYS A 125 B 5 ASP A 132 ? ASN A 138 ? ASP A 132 ASN A 138 B 6 VAL A 22 ? ASP A 30 ? VAL A 22 ASP A 30 B 7 ILE A 164 ? SER A 165 ? ILE A 164 SER A 165 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 96 ? O LYS A 96 N LYS A 88 ? N LYS A 88 A 2 3 O THR A 83 ? O THR A 83 N GLN A 75 ? N GLN A 75 A 3 4 O LEU A 74 ? O LEU A 74 N LEU A 53 ? N LEU A 53 A 4 5 O LYS A 54 ? O LYS A 54 N GLY A 47 ? N GLY A 47 A 5 6 O LEU A 44 ? O LEU A 44 N TRP A 23 ? N TRP A 23 A 6 7 N TYR A 28 ? N TYR A 28 O ILE A 164 ? O ILE A 164 B 1 2 O LYS A 96 ? O LYS A 96 N LYS A 88 ? N LYS A 88 B 2 3 N ALA A 84 ? N ALA A 84 O TYR A 105 ? O TYR A 105 B 3 4 N TYR A 104 ? N TYR A 104 O HIS A 124 ? O HIS A 124 B 4 5 N ALA A 117 ? N ALA A 117 O LEU A 137 ? O LEU A 137 B 5 6 O ASN A 138 ? O ASN A 138 N TYR A 24 ? N TYR A 24 B 6 7 N TYR A 28 ? N TYR A 28 O ILE A 164 ? O ILE A 164 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id HEM _struct_site.pdbx_auth_seq_id 185 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 18 _struct_site.details 'BINDING SITE FOR RESIDUE HEM A 185' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 TYR A 28 ? TYR A 28 . ? 1_555 ? 2 AC1 18 TYR A 40 ? TYR A 40 . ? 1_555 ? 3 AC1 18 LEU A 44 ? LEU A 44 . ? 1_555 ? 4 AC1 18 LEU A 57 ? LEU A 57 . ? 1_555 ? 5 AC1 18 HIS A 59 ? HIS A 59 . ? 1_555 ? 6 AC1 18 ASP A 70 ? ASP A 70 . ? 1_555 ? 7 AC1 18 PHE A 86 ? PHE A 86 . ? 1_555 ? 8 AC1 18 LYS A 88 ? LYS A 88 . ? 1_555 ? 9 AC1 18 TYR A 105 ? TYR A 105 . ? 1_555 ? 10 AC1 18 ILE A 119 ? ILE A 119 . ? 1_555 ? 11 AC1 18 LEU A 123 ? LEU A 123 . ? 1_555 ? 12 AC1 18 LYS A 125 ? LYS A 125 . ? 1_555 ? 13 AC1 18 LYS A 128 ? LYS A 128 . ? 1_555 ? 14 AC1 18 LEU A 133 ? LEU A 133 . ? 1_555 ? 15 AC1 18 HOH C . ? HOH A 186 . ? 1_555 ? 16 AC1 18 HOH C . ? HOH A 290 . ? 1_555 ? 17 AC1 18 HOH C . ? HOH A 379 . ? 1_555 ? 18 AC1 18 HOH C . ? HOH A 490 . ? 1_555 ? # _pdbx_entry_details.entry_id 1YWD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A TYR 40 ? ? CG A TYR 40 ? ? CD2 A TYR 40 ? ? 116.79 121.00 -4.21 0.60 N 2 1 CB A TYR 40 ? ? CG A TYR 40 ? ? CD1 A TYR 40 ? ? 127.68 121.00 6.68 0.60 N 3 1 CA A GLN 65 ? ? CB A GLN 65 ? ? CG A GLN 65 ? ? 135.47 113.40 22.07 2.20 N 4 1 O A GLN 65 ? ? C A GLN 65 ? ? N A ASP 66 ? ? 109.37 122.70 -13.33 1.60 Y 5 1 CB A TYR 111 ? ? CG A TYR 111 ? ? CD2 A TYR 111 ? ? 127.30 121.00 6.30 0.60 N 6 1 CB A ASP 114 ? ? CG A ASP 114 ? ? OD2 A ASP 114 ? ? 124.54 118.30 6.24 0.90 N 7 1 CB A ASP 142 ? ? CG A ASP 142 ? ? OD2 A ASP 142 ? ? 112.34 118.30 -5.96 0.90 N 8 1 C A ASN 170 ? B N A CYS 171 ? B CA A CYS 171 ? B 106.26 121.70 -15.44 2.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 34 ? ? -99.04 -143.53 2 1 VAL A 36 ? ? 88.61 151.99 3 1 GLN A 65 ? ? 74.38 -0.39 4 1 ASN A 127 ? ? -96.19 31.40 5 1 ASP A 142 ? ? 57.05 8.14 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 274 ? C HOH . 2 1 A HOH 414 ? C HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HEM CHA C N N 137 HEM CHB C N N 138 HEM CHC C N N 139 HEM CHD C N N 140 HEM C1A C Y N 141 HEM C2A C Y N 142 HEM C3A C Y N 143 HEM C4A C Y N 144 HEM CMA C N N 145 HEM CAA C N N 146 HEM CBA C N N 147 HEM CGA C N N 148 HEM O1A O N N 149 HEM O2A O N N 150 HEM C1B C N N 151 HEM C2B C N N 152 HEM C3B C N N 153 HEM C4B C N N 154 HEM CMB C N N 155 HEM CAB C N N 156 HEM CBB C N N 157 HEM C1C C Y N 158 HEM C2C C Y N 159 HEM C3C C Y N 160 HEM C4C C Y N 161 HEM CMC C N N 162 HEM CAC C N N 163 HEM CBC C N N 164 HEM C1D C N N 165 HEM C2D C N N 166 HEM C3D C N N 167 HEM C4D C N N 168 HEM CMD C N N 169 HEM CAD C N N 170 HEM CBD C N N 171 HEM CGD C N N 172 HEM O1D O N N 173 HEM O2D O N N 174 HEM NA N Y N 175 HEM NB N N N 176 HEM NC N Y N 177 HEM ND N N N 178 HEM FE FE N N 179 HEM HHB H N N 180 HEM HHC H N N 181 HEM HHD H N N 182 HEM HMA H N N 183 HEM HMAA H N N 184 HEM HMAB H N N 185 HEM HAA H N N 186 HEM HAAA H N N 187 HEM HBA H N N 188 HEM HBAA H N N 189 HEM HMB H N N 190 HEM HMBA H N N 191 HEM HMBB H N N 192 HEM HAB H N N 193 HEM HBB H N N 194 HEM HBBA H N N 195 HEM HMC H N N 196 HEM HMCA H N N 197 HEM HMCB H N N 198 HEM HAC H N N 199 HEM HBC H N N 200 HEM HBCA H N N 201 HEM HMD H N N 202 HEM HMDA H N N 203 HEM HMDB H N N 204 HEM HAD H N N 205 HEM HADA H N N 206 HEM HBD H N N 207 HEM HBDA H N N 208 HEM H2A H N N 209 HEM H2D H N N 210 HEM HHA H N N 211 HIS N N N N 212 HIS CA C N S 213 HIS C C N N 214 HIS O O N N 215 HIS CB C N N 216 HIS CG C Y N 217 HIS ND1 N Y N 218 HIS CD2 C Y N 219 HIS CE1 C Y N 220 HIS NE2 N Y N 221 HIS OXT O N N 222 HIS H H N N 223 HIS H2 H N N 224 HIS HA H N N 225 HIS HB2 H N N 226 HIS HB3 H N N 227 HIS HD1 H N N 228 HIS HD2 H N N 229 HIS HE1 H N N 230 HIS HE2 H N N 231 HIS HXT H N N 232 HOH O O N N 233 HOH H1 H N N 234 HOH H2 H N N 235 ILE N N N N 236 ILE CA C N S 237 ILE C C N N 238 ILE O O N N 239 ILE CB C N S 240 ILE CG1 C N N 241 ILE CG2 C N N 242 ILE CD1 C N N 243 ILE OXT O N N 244 ILE H H N N 245 ILE H2 H N N 246 ILE HA H N N 247 ILE HB H N N 248 ILE HG12 H N N 249 ILE HG13 H N N 250 ILE HG21 H N N 251 ILE HG22 H N N 252 ILE HG23 H N N 253 ILE HD11 H N N 254 ILE HD12 H N N 255 ILE HD13 H N N 256 ILE HXT H N N 257 LEU N N N N 258 LEU CA C N S 259 LEU C C N N 260 LEU O O N N 261 LEU CB C N N 262 LEU CG C N N 263 LEU CD1 C N N 264 LEU CD2 C N N 265 LEU OXT O N N 266 LEU H H N N 267 LEU H2 H N N 268 LEU HA H N N 269 LEU HB2 H N N 270 LEU HB3 H N N 271 LEU HG H N N 272 LEU HD11 H N N 273 LEU HD12 H N N 274 LEU HD13 H N N 275 LEU HD21 H N N 276 LEU HD22 H N N 277 LEU HD23 H N N 278 LEU HXT H N N 279 LYS N N N N 280 LYS CA C N S 281 LYS C C N N 282 LYS O O N N 283 LYS CB C N N 284 LYS CG C N N 285 LYS CD C N N 286 LYS CE C N N 287 LYS NZ N N N 288 LYS OXT O N N 289 LYS H H N N 290 LYS H2 H N N 291 LYS HA H N N 292 LYS HB2 H N N 293 LYS HB3 H N N 294 LYS HG2 H N N 295 LYS HG3 H N N 296 LYS HD2 H N N 297 LYS HD3 H N N 298 LYS HE2 H N N 299 LYS HE3 H N N 300 LYS HZ1 H N N 301 LYS HZ2 H N N 302 LYS HZ3 H N N 303 LYS HXT H N N 304 MET N N N N 305 MET CA C N S 306 MET C C N N 307 MET O O N N 308 MET CB C N N 309 MET CG C N N 310 MET SD S N N 311 MET CE C N N 312 MET OXT O N N 313 MET H H N N 314 MET H2 H N N 315 MET HA H N N 316 MET HB2 H N N 317 MET HB3 H N N 318 MET HG2 H N N 319 MET HG3 H N N 320 MET HE1 H N N 321 MET HE2 H N N 322 MET HE3 H N N 323 MET HXT H N N 324 PHE N N N N 325 PHE CA C N S 326 PHE C C N N 327 PHE O O N N 328 PHE CB C N N 329 PHE CG C Y N 330 PHE CD1 C Y N 331 PHE CD2 C Y N 332 PHE CE1 C Y N 333 PHE CE2 C Y N 334 PHE CZ C Y N 335 PHE OXT O N N 336 PHE H H N N 337 PHE H2 H N N 338 PHE HA H N N 339 PHE HB2 H N N 340 PHE HB3 H N N 341 PHE HD1 H N N 342 PHE HD2 H N N 343 PHE HE1 H N N 344 PHE HE2 H N N 345 PHE HZ H N N 346 PHE HXT H N N 347 PRO N N N N 348 PRO CA C N S 349 PRO C C N N 350 PRO O O N N 351 PRO CB C N N 352 PRO CG C N N 353 PRO CD C N N 354 PRO OXT O N N 355 PRO H H N N 356 PRO HA H N N 357 PRO HB2 H N N 358 PRO HB3 H N N 359 PRO HG2 H N N 360 PRO HG3 H N N 361 PRO HD2 H N N 362 PRO HD3 H N N 363 PRO HXT H N N 364 SER N N N N 365 SER CA C N S 366 SER C C N N 367 SER O O N N 368 SER CB C N N 369 SER OG O N N 370 SER OXT O N N 371 SER H H N N 372 SER H2 H N N 373 SER HA H N N 374 SER HB2 H N N 375 SER HB3 H N N 376 SER HG H N N 377 SER HXT H N N 378 THR N N N N 379 THR CA C N S 380 THR C C N N 381 THR O O N N 382 THR CB C N R 383 THR OG1 O N N 384 THR CG2 C N N 385 THR OXT O N N 386 THR H H N N 387 THR H2 H N N 388 THR HA H N N 389 THR HB H N N 390 THR HG1 H N N 391 THR HG21 H N N 392 THR HG22 H N N 393 THR HG23 H N N 394 THR HXT H N N 395 TRP N N N N 396 TRP CA C N S 397 TRP C C N N 398 TRP O O N N 399 TRP CB C N N 400 TRP CG C Y N 401 TRP CD1 C Y N 402 TRP CD2 C Y N 403 TRP NE1 N Y N 404 TRP CE2 C Y N 405 TRP CE3 C Y N 406 TRP CZ2 C Y N 407 TRP CZ3 C Y N 408 TRP CH2 C Y N 409 TRP OXT O N N 410 TRP H H N N 411 TRP H2 H N N 412 TRP HA H N N 413 TRP HB2 H N N 414 TRP HB3 H N N 415 TRP HD1 H N N 416 TRP HE1 H N N 417 TRP HE3 H N N 418 TRP HZ2 H N N 419 TRP HZ3 H N N 420 TRP HH2 H N N 421 TRP HXT H N N 422 TYR N N N N 423 TYR CA C N S 424 TYR C C N N 425 TYR O O N N 426 TYR CB C N N 427 TYR CG C Y N 428 TYR CD1 C Y N 429 TYR CD2 C Y N 430 TYR CE1 C Y N 431 TYR CE2 C Y N 432 TYR CZ C Y N 433 TYR OH O N N 434 TYR OXT O N N 435 TYR H H N N 436 TYR H2 H N N 437 TYR HA H N N 438 TYR HB2 H N N 439 TYR HB3 H N N 440 TYR HD1 H N N 441 TYR HD2 H N N 442 TYR HE1 H N N 443 TYR HE2 H N N 444 TYR HH H N N 445 TYR HXT H N N 446 VAL N N N N 447 VAL CA C N S 448 VAL C C N N 449 VAL O O N N 450 VAL CB C N N 451 VAL CG1 C N N 452 VAL CG2 C N N 453 VAL OXT O N N 454 VAL H H N N 455 VAL H2 H N N 456 VAL HA H N N 457 VAL HB H N N 458 VAL HG11 H N N 459 VAL HG12 H N N 460 VAL HG13 H N N 461 VAL HG21 H N N 462 VAL HG22 H N N 463 VAL HG23 H N N 464 VAL HXT H N N 465 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HEM CHA C1A sing N N 129 HEM CHA C4D doub N N 130 HEM CHA HHA sing N N 131 HEM CHB C4A sing N N 132 HEM CHB C1B doub N N 133 HEM CHB HHB sing N N 134 HEM CHC C4B sing N N 135 HEM CHC C1C doub N N 136 HEM CHC HHC sing N N 137 HEM CHD C4C doub N N 138 HEM CHD C1D sing N N 139 HEM CHD HHD sing N N 140 HEM C1A C2A doub Y N 141 HEM C1A NA sing Y N 142 HEM C2A C3A sing Y N 143 HEM C2A CAA sing N N 144 HEM C3A C4A doub Y N 145 HEM C3A CMA sing N N 146 HEM C4A NA sing Y N 147 HEM CMA HMA sing N N 148 HEM CMA HMAA sing N N 149 HEM CMA HMAB sing N N 150 HEM CAA CBA sing N N 151 HEM CAA HAA sing N N 152 HEM CAA HAAA sing N N 153 HEM CBA CGA sing N N 154 HEM CBA HBA sing N N 155 HEM CBA HBAA sing N N 156 HEM CGA O1A doub N N 157 HEM CGA O2A sing N N 158 HEM C1B C2B sing N N 159 HEM C1B NB sing N N 160 HEM C2B C3B doub N N 161 HEM C2B CMB sing N N 162 HEM C3B C4B sing N N 163 HEM C3B CAB sing N N 164 HEM C4B NB doub N N 165 HEM CMB HMB sing N N 166 HEM CMB HMBA sing N N 167 HEM CMB HMBB sing N N 168 HEM CAB CBB doub N N 169 HEM CAB HAB sing N N 170 HEM CBB HBB sing N N 171 HEM CBB HBBA sing N N 172 HEM C1C C2C sing Y N 173 HEM C1C NC sing Y N 174 HEM C2C C3C doub Y N 175 HEM C2C CMC sing N N 176 HEM C3C C4C sing Y N 177 HEM C3C CAC sing N N 178 HEM C4C NC sing Y N 179 HEM CMC HMC sing N N 180 HEM CMC HMCA sing N N 181 HEM CMC HMCB sing N N 182 HEM CAC CBC doub N N 183 HEM CAC HAC sing N N 184 HEM CBC HBC sing N N 185 HEM CBC HBCA sing N N 186 HEM C1D C2D sing N N 187 HEM C1D ND doub N N 188 HEM C2D C3D doub N N 189 HEM C2D CMD sing N N 190 HEM C3D C4D sing N N 191 HEM C3D CAD sing N N 192 HEM C4D ND sing N N 193 HEM CMD HMD sing N N 194 HEM CMD HMDA sing N N 195 HEM CMD HMDB sing N N 196 HEM CAD CBD sing N N 197 HEM CAD HAD sing N N 198 HEM CAD HADA sing N N 199 HEM CBD CGD sing N N 200 HEM CBD HBD sing N N 201 HEM CBD HBDA sing N N 202 HEM CGD O1D doub N N 203 HEM CGD O2D sing N N 204 HEM O2A H2A sing N N 205 HEM O2D H2D sing N N 206 HEM FE NA sing N N 207 HEM FE NB sing N N 208 HEM FE NC sing N N 209 HEM FE ND sing N N 210 HIS N CA sing N N 211 HIS N H sing N N 212 HIS N H2 sing N N 213 HIS CA C sing N N 214 HIS CA CB sing N N 215 HIS CA HA sing N N 216 HIS C O doub N N 217 HIS C OXT sing N N 218 HIS CB CG sing N N 219 HIS CB HB2 sing N N 220 HIS CB HB3 sing N N 221 HIS CG ND1 sing Y N 222 HIS CG CD2 doub Y N 223 HIS ND1 CE1 doub Y N 224 HIS ND1 HD1 sing N N 225 HIS CD2 NE2 sing Y N 226 HIS CD2 HD2 sing N N 227 HIS CE1 NE2 sing Y N 228 HIS CE1 HE1 sing N N 229 HIS NE2 HE2 sing N N 230 HIS OXT HXT sing N N 231 HOH O H1 sing N N 232 HOH O H2 sing N N 233 ILE N CA sing N N 234 ILE N H sing N N 235 ILE N H2 sing N N 236 ILE CA C sing N N 237 ILE CA CB sing N N 238 ILE CA HA sing N N 239 ILE C O doub N N 240 ILE C OXT sing N N 241 ILE CB CG1 sing N N 242 ILE CB CG2 sing N N 243 ILE CB HB sing N N 244 ILE CG1 CD1 sing N N 245 ILE CG1 HG12 sing N N 246 ILE CG1 HG13 sing N N 247 ILE CG2 HG21 sing N N 248 ILE CG2 HG22 sing N N 249 ILE CG2 HG23 sing N N 250 ILE CD1 HD11 sing N N 251 ILE CD1 HD12 sing N N 252 ILE CD1 HD13 sing N N 253 ILE OXT HXT sing N N 254 LEU N CA sing N N 255 LEU N H sing N N 256 LEU N H2 sing N N 257 LEU CA C sing N N 258 LEU CA CB sing N N 259 LEU CA HA sing N N 260 LEU C O doub N N 261 LEU C OXT sing N N 262 LEU CB CG sing N N 263 LEU CB HB2 sing N N 264 LEU CB HB3 sing N N 265 LEU CG CD1 sing N N 266 LEU CG CD2 sing N N 267 LEU CG HG sing N N 268 LEU CD1 HD11 sing N N 269 LEU CD1 HD12 sing N N 270 LEU CD1 HD13 sing N N 271 LEU CD2 HD21 sing N N 272 LEU CD2 HD22 sing N N 273 LEU CD2 HD23 sing N N 274 LEU OXT HXT sing N N 275 LYS N CA sing N N 276 LYS N H sing N N 277 LYS N H2 sing N N 278 LYS CA C sing N N 279 LYS CA CB sing N N 280 LYS CA HA sing N N 281 LYS C O doub N N 282 LYS C OXT sing N N 283 LYS CB CG sing N N 284 LYS CB HB2 sing N N 285 LYS CB HB3 sing N N 286 LYS CG CD sing N N 287 LYS CG HG2 sing N N 288 LYS CG HG3 sing N N 289 LYS CD CE sing N N 290 LYS CD HD2 sing N N 291 LYS CD HD3 sing N N 292 LYS CE NZ sing N N 293 LYS CE HE2 sing N N 294 LYS CE HE3 sing N N 295 LYS NZ HZ1 sing N N 296 LYS NZ HZ2 sing N N 297 LYS NZ HZ3 sing N N 298 LYS OXT HXT sing N N 299 MET N CA sing N N 300 MET N H sing N N 301 MET N H2 sing N N 302 MET CA C sing N N 303 MET CA CB sing N N 304 MET CA HA sing N N 305 MET C O doub N N 306 MET C OXT sing N N 307 MET CB CG sing N N 308 MET CB HB2 sing N N 309 MET CB HB3 sing N N 310 MET CG SD sing N N 311 MET CG HG2 sing N N 312 MET CG HG3 sing N N 313 MET SD CE sing N N 314 MET CE HE1 sing N N 315 MET CE HE2 sing N N 316 MET CE HE3 sing N N 317 MET OXT HXT sing N N 318 PHE N CA sing N N 319 PHE N H sing N N 320 PHE N H2 sing N N 321 PHE CA C sing N N 322 PHE CA CB sing N N 323 PHE CA HA sing N N 324 PHE C O doub N N 325 PHE C OXT sing N N 326 PHE CB CG sing N N 327 PHE CB HB2 sing N N 328 PHE CB HB3 sing N N 329 PHE CG CD1 doub Y N 330 PHE CG CD2 sing Y N 331 PHE CD1 CE1 sing Y N 332 PHE CD1 HD1 sing N N 333 PHE CD2 CE2 doub Y N 334 PHE CD2 HD2 sing N N 335 PHE CE1 CZ doub Y N 336 PHE CE1 HE1 sing N N 337 PHE CE2 CZ sing Y N 338 PHE CE2 HE2 sing N N 339 PHE CZ HZ sing N N 340 PHE OXT HXT sing N N 341 PRO N CA sing N N 342 PRO N CD sing N N 343 PRO N H sing N N 344 PRO CA C sing N N 345 PRO CA CB sing N N 346 PRO CA HA sing N N 347 PRO C O doub N N 348 PRO C OXT sing N N 349 PRO CB CG sing N N 350 PRO CB HB2 sing N N 351 PRO CB HB3 sing N N 352 PRO CG CD sing N N 353 PRO CG HG2 sing N N 354 PRO CG HG3 sing N N 355 PRO CD HD2 sing N N 356 PRO CD HD3 sing N N 357 PRO OXT HXT sing N N 358 SER N CA sing N N 359 SER N H sing N N 360 SER N H2 sing N N 361 SER CA C sing N N 362 SER CA CB sing N N 363 SER CA HA sing N N 364 SER C O doub N N 365 SER C OXT sing N N 366 SER CB OG sing N N 367 SER CB HB2 sing N N 368 SER CB HB3 sing N N 369 SER OG HG sing N N 370 SER OXT HXT sing N N 371 THR N CA sing N N 372 THR N H sing N N 373 THR N H2 sing N N 374 THR CA C sing N N 375 THR CA CB sing N N 376 THR CA HA sing N N 377 THR C O doub N N 378 THR C OXT sing N N 379 THR CB OG1 sing N N 380 THR CB CG2 sing N N 381 THR CB HB sing N N 382 THR OG1 HG1 sing N N 383 THR CG2 HG21 sing N N 384 THR CG2 HG22 sing N N 385 THR CG2 HG23 sing N N 386 THR OXT HXT sing N N 387 TRP N CA sing N N 388 TRP N H sing N N 389 TRP N H2 sing N N 390 TRP CA C sing N N 391 TRP CA CB sing N N 392 TRP CA HA sing N N 393 TRP C O doub N N 394 TRP C OXT sing N N 395 TRP CB CG sing N N 396 TRP CB HB2 sing N N 397 TRP CB HB3 sing N N 398 TRP CG CD1 doub Y N 399 TRP CG CD2 sing Y N 400 TRP CD1 NE1 sing Y N 401 TRP CD1 HD1 sing N N 402 TRP CD2 CE2 doub Y N 403 TRP CD2 CE3 sing Y N 404 TRP NE1 CE2 sing Y N 405 TRP NE1 HE1 sing N N 406 TRP CE2 CZ2 sing Y N 407 TRP CE3 CZ3 doub Y N 408 TRP CE3 HE3 sing N N 409 TRP CZ2 CH2 doub Y N 410 TRP CZ2 HZ2 sing N N 411 TRP CZ3 CH2 sing Y N 412 TRP CZ3 HZ3 sing N N 413 TRP CH2 HH2 sing N N 414 TRP OXT HXT sing N N 415 TYR N CA sing N N 416 TYR N H sing N N 417 TYR N H2 sing N N 418 TYR CA C sing N N 419 TYR CA CB sing N N 420 TYR CA HA sing N N 421 TYR C O doub N N 422 TYR C OXT sing N N 423 TYR CB CG sing N N 424 TYR CB HB2 sing N N 425 TYR CB HB3 sing N N 426 TYR CG CD1 doub Y N 427 TYR CG CD2 sing Y N 428 TYR CD1 CE1 sing Y N 429 TYR CD1 HD1 sing N N 430 TYR CD2 CE2 doub Y N 431 TYR CD2 HD2 sing N N 432 TYR CE1 CZ doub Y N 433 TYR CE1 HE1 sing N N 434 TYR CE2 CZ sing Y N 435 TYR CE2 HE2 sing N N 436 TYR CZ OH sing N N 437 TYR OH HH sing N N 438 TYR OXT HXT sing N N 439 VAL N CA sing N N 440 VAL N H sing N N 441 VAL N H2 sing N N 442 VAL CA C sing N N 443 VAL CA CB sing N N 444 VAL CA HA sing N N 445 VAL C O doub N N 446 VAL C OXT sing N N 447 VAL CB CG1 sing N N 448 VAL CB CG2 sing N N 449 VAL CB HB sing N N 450 VAL CG1 HG11 sing N N 451 VAL CG1 HG12 sing N N 452 VAL CG1 HG13 sing N N 453 VAL CG2 HG21 sing N N 454 VAL CG2 HG22 sing N N 455 VAL CG2 HG23 sing N N 456 VAL OXT HXT sing N N 457 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1D2U _pdbx_initial_refinement_model.details 'PDB ID 1D2U' # _atom_sites.entry_id 1YWD _atom_sites.fract_transf_matrix[1][1] 0.014273 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001091 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023307 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019186 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_