data_1YZQ # _entry.id 1YZQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YZQ pdb_00001yzq 10.2210/pdb1yzq/pdb RCSB RCSB032115 ? ? WWPDB D_1000032115 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 4 'Structure model' '_struct_ref_seq_dif.details' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YZQ _pdbx_database_status.recvd_initial_deposition_date 2005-02-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eathiraj, S.' 1 'Pan, X.' 2 'Ritacco, C.' 3 'Lambright, D.G.' 4 # _citation.id primary _citation.title 'Structural basis of family-wide Rab GTPase recognition by rabenosyn-5.' _citation.journal_abbrev Nature _citation.journal_volume 436 _citation.page_first 415 _citation.page_last 419 _citation.year 2005 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16034420 _citation.pdbx_database_id_DOI 10.1038/nature03798 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eathiraj, S.' 1 ? primary 'Pan, X.' 2 ? primary 'Ritacco, C.' 3 ? primary 'Lambright, D.G.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'small GTP binding protein RAB6 isoform' 19372.139 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 522.196 1 ? ? ? ? 4 water nat water 18.015 195 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSA AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF RRVAAALPGM ; _entity_poly.pdbx_seq_one_letter_code_can ;GSPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSA AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF RRVAAALPGM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' GNP 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 LEU n 1 5 ARG n 1 6 LYS n 1 7 PHE n 1 8 LYS n 1 9 LEU n 1 10 VAL n 1 11 PHE n 1 12 LEU n 1 13 GLY n 1 14 GLU n 1 15 GLN n 1 16 SER n 1 17 VAL n 1 18 GLY n 1 19 LYS n 1 20 THR n 1 21 SER n 1 22 LEU n 1 23 ILE n 1 24 THR n 1 25 ARG n 1 26 PHE n 1 27 MET n 1 28 TYR n 1 29 ASP n 1 30 SER n 1 31 PHE n 1 32 ASP n 1 33 ASN n 1 34 THR n 1 35 TYR n 1 36 GLN n 1 37 ALA n 1 38 THR n 1 39 ILE n 1 40 GLY n 1 41 ILE n 1 42 ASP n 1 43 PHE n 1 44 LEU n 1 45 SER n 1 46 LYS n 1 47 THR n 1 48 MET n 1 49 TYR n 1 50 LEU n 1 51 GLU n 1 52 ASP n 1 53 ARG n 1 54 THR n 1 55 ILE n 1 56 ARG n 1 57 LEU n 1 58 GLN n 1 59 LEU n 1 60 TRP n 1 61 ASP n 1 62 THR n 1 63 ALA n 1 64 GLY n 1 65 GLN n 1 66 GLU n 1 67 ARG n 1 68 PHE n 1 69 ARG n 1 70 SER n 1 71 LEU n 1 72 ILE n 1 73 PRO n 1 74 SER n 1 75 TYR n 1 76 ILE n 1 77 ARG n 1 78 ASP n 1 79 SER n 1 80 ALA n 1 81 ALA n 1 82 ALA n 1 83 VAL n 1 84 VAL n 1 85 VAL n 1 86 TYR n 1 87 ASP n 1 88 ILE n 1 89 THR n 1 90 ASN n 1 91 VAL n 1 92 ASN n 1 93 SER n 1 94 PHE n 1 95 GLN n 1 96 GLN n 1 97 THR n 1 98 THR n 1 99 LYS n 1 100 TRP n 1 101 ILE n 1 102 ASP n 1 103 ASP n 1 104 VAL n 1 105 ARG n 1 106 THR n 1 107 GLU n 1 108 ARG n 1 109 GLY n 1 110 SER n 1 111 ASP n 1 112 VAL n 1 113 ILE n 1 114 ILE n 1 115 MET n 1 116 LEU n 1 117 VAL n 1 118 GLY n 1 119 ASN n 1 120 LYS n 1 121 THR n 1 122 ASP n 1 123 LEU n 1 124 ALA n 1 125 ASP n 1 126 LYS n 1 127 ARG n 1 128 GLN n 1 129 VAL n 1 130 SER n 1 131 ILE n 1 132 GLU n 1 133 GLU n 1 134 GLY n 1 135 GLU n 1 136 ARG n 1 137 LYS n 1 138 ALA n 1 139 LYS n 1 140 GLU n 1 141 LEU n 1 142 ASN n 1 143 VAL n 1 144 MET n 1 145 PHE n 1 146 ILE n 1 147 GLU n 1 148 THR n 1 149 SER n 1 150 ALA n 1 151 LYS n 1 152 ALA n 1 153 GLY n 1 154 TYR n 1 155 ASN n 1 156 VAL n 1 157 LYS n 1 158 GLN n 1 159 LEU n 1 160 PHE n 1 161 ARG n 1 162 ARG n 1 163 VAL n 1 164 ALA n 1 165 ALA n 1 166 ALA n 1 167 LEU n 1 168 PRO n 1 169 GLY n 1 170 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene RAB6 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) Codon Plus-RIL cells' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'GST fusion, pGEX' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX4T1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GNP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' ? 'C10 H17 N6 O13 P3' 522.196 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 8 ? ? ? A . n A 1 2 SER 2 9 ? ? ? A . n A 1 3 PRO 3 10 ? ? ? A . n A 1 4 LEU 4 11 ? ? ? A . n A 1 5 ARG 5 12 ? ? ? A . n A 1 6 LYS 6 13 ? ? ? A . n A 1 7 PHE 7 14 14 PHE PHE A . n A 1 8 LYS 8 15 15 LYS LYS A . n A 1 9 LEU 9 16 16 LEU LEU A . n A 1 10 VAL 10 17 17 VAL VAL A . n A 1 11 PHE 11 18 18 PHE PHE A . n A 1 12 LEU 12 19 19 LEU LEU A . n A 1 13 GLY 13 20 20 GLY GLY A . n A 1 14 GLU 14 21 21 GLU GLU A . n A 1 15 GLN 15 22 22 GLN GLN A . n A 1 16 SER 16 23 23 SER SER A . n A 1 17 VAL 17 24 24 VAL VAL A . n A 1 18 GLY 18 25 25 GLY GLY A . n A 1 19 LYS 19 26 26 LYS LYS A . n A 1 20 THR 20 27 27 THR THR A . n A 1 21 SER 21 28 28 SER SER A . n A 1 22 LEU 22 29 29 LEU LEU A . n A 1 23 ILE 23 30 30 ILE ILE A . n A 1 24 THR 24 31 31 THR THR A . n A 1 25 ARG 25 32 32 ARG ARG A . n A 1 26 PHE 26 33 33 PHE PHE A . n A 1 27 MET 27 34 34 MET MET A . n A 1 28 TYR 28 35 35 TYR TYR A . n A 1 29 ASP 29 36 36 ASP ASP A . n A 1 30 SER 30 37 37 SER SER A . n A 1 31 PHE 31 38 38 PHE PHE A . n A 1 32 ASP 32 39 39 ASP ASP A . n A 1 33 ASN 33 40 40 ASN ASN A . n A 1 34 THR 34 41 41 THR THR A . n A 1 35 TYR 35 42 42 TYR TYR A . n A 1 36 GLN 36 43 43 GLN ALA A . n A 1 37 ALA 37 44 44 ALA ALA A . n A 1 38 THR 38 45 45 THR THR A . n A 1 39 ILE 39 46 46 ILE ILE A . n A 1 40 GLY 40 47 47 GLY GLY A . n A 1 41 ILE 41 48 48 ILE ILE A . n A 1 42 ASP 42 49 49 ASP ASP A . n A 1 43 PHE 43 50 50 PHE PHE A . n A 1 44 LEU 44 51 51 LEU LEU A . n A 1 45 SER 45 52 52 SER SER A . n A 1 46 LYS 46 53 53 LYS LYS A . n A 1 47 THR 47 54 54 THR THR A . n A 1 48 MET 48 55 55 MET MET A . n A 1 49 TYR 49 56 56 TYR TYR A . n A 1 50 LEU 50 57 57 LEU LEU A . n A 1 51 GLU 51 58 58 GLU ALA A . n A 1 52 ASP 52 59 59 ASP ASP A . n A 1 53 ARG 53 60 60 ARG ARG A . n A 1 54 THR 54 61 61 THR THR A . n A 1 55 ILE 55 62 62 ILE ILE A . n A 1 56 ARG 56 63 63 ARG ALA A . n A 1 57 LEU 57 64 64 LEU LEU A . n A 1 58 GLN 58 65 65 GLN GLN A . n A 1 59 LEU 59 66 66 LEU LEU A . n A 1 60 TRP 60 67 67 TRP TRP A . n A 1 61 ASP 61 68 68 ASP ASP A . n A 1 62 THR 62 69 69 THR THR A . n A 1 63 ALA 63 70 70 ALA ALA A . n A 1 64 GLY 64 71 71 GLY GLY A . n A 1 65 GLN 65 72 72 GLN GLN A . n A 1 66 GLU 66 73 73 GLU ALA A . n A 1 67 ARG 67 74 74 ARG ARG A . n A 1 68 PHE 68 75 75 PHE PHE A . n A 1 69 ARG 69 76 76 ARG ALA A . n A 1 70 SER 70 77 77 SER SER A . n A 1 71 LEU 71 78 78 LEU LEU A . n A 1 72 ILE 72 79 79 ILE ILE A . n A 1 73 PRO 73 80 80 PRO PRO A . n A 1 74 SER 74 81 81 SER SER A . n A 1 75 TYR 75 82 82 TYR TYR A . n A 1 76 ILE 76 83 83 ILE ILE A . n A 1 77 ARG 77 84 84 ARG ARG A . n A 1 78 ASP 78 85 85 ASP ASP A . n A 1 79 SER 79 86 86 SER SER A . n A 1 80 ALA 80 87 87 ALA ALA A . n A 1 81 ALA 81 88 88 ALA ALA A . n A 1 82 ALA 82 89 89 ALA ALA A . n A 1 83 VAL 83 90 90 VAL VAL A . n A 1 84 VAL 84 91 91 VAL VAL A . n A 1 85 VAL 85 92 92 VAL VAL A . n A 1 86 TYR 86 93 93 TYR TYR A . n A 1 87 ASP 87 94 94 ASP ASP A . n A 1 88 ILE 88 95 95 ILE ILE A . n A 1 89 THR 89 96 96 THR THR A . n A 1 90 ASN 90 97 97 ASN ASN A . n A 1 91 VAL 91 98 98 VAL VAL A . n A 1 92 ASN 92 99 99 ASN ASN A . n A 1 93 SER 93 100 100 SER SER A . n A 1 94 PHE 94 101 101 PHE PHE A . n A 1 95 GLN 95 102 102 GLN GLN A . n A 1 96 GLN 96 103 103 GLN GLN A . n A 1 97 THR 97 104 104 THR THR A . n A 1 98 THR 98 105 105 THR THR A . n A 1 99 LYS 99 106 106 LYS LYS A . n A 1 100 TRP 100 107 107 TRP TRP A . n A 1 101 ILE 101 108 108 ILE ILE A . n A 1 102 ASP 102 109 109 ASP ASP A . n A 1 103 ASP 103 110 110 ASP ASP A . n A 1 104 VAL 104 111 111 VAL VAL A . n A 1 105 ARG 105 112 112 ARG ARG A . n A 1 106 THR 106 113 113 THR THR A . n A 1 107 GLU 107 114 114 GLU GLU A . n A 1 108 ARG 108 115 115 ARG ARG A . n A 1 109 GLY 109 116 116 GLY GLY A . n A 1 110 SER 110 117 117 SER SER A . n A 1 111 ASP 111 118 118 ASP ASP A . n A 1 112 VAL 112 119 119 VAL VAL A . n A 1 113 ILE 113 120 120 ILE ILE A . n A 1 114 ILE 114 121 121 ILE ILE A . n A 1 115 MET 115 122 122 MET MET A . n A 1 116 LEU 116 123 123 LEU LEU A . n A 1 117 VAL 117 124 124 VAL VAL A . n A 1 118 GLY 118 125 125 GLY GLY A . n A 1 119 ASN 119 126 126 ASN ASN A . n A 1 120 LYS 120 127 127 LYS LYS A . n A 1 121 THR 121 128 128 THR THR A . n A 1 122 ASP 122 129 129 ASP ASP A . n A 1 123 LEU 123 130 130 LEU LEU A . n A 1 124 ALA 124 131 131 ALA ALA A . n A 1 125 ASP 125 132 132 ASP ASP A . n A 1 126 LYS 126 133 133 LYS LYS A . n A 1 127 ARG 127 134 134 ARG ARG A . n A 1 128 GLN 128 135 135 GLN GLN A . n A 1 129 VAL 129 136 136 VAL VAL A . n A 1 130 SER 130 137 137 SER SER A . n A 1 131 ILE 131 138 138 ILE ILE A . n A 1 132 GLU 132 139 139 GLU GLU A . n A 1 133 GLU 133 140 140 GLU GLU A . n A 1 134 GLY 134 141 141 GLY GLY A . n A 1 135 GLU 135 142 142 GLU GLU A . n A 1 136 ARG 136 143 143 ARG ARG A . n A 1 137 LYS 137 144 144 LYS LYS A . n A 1 138 ALA 138 145 145 ALA ALA A . n A 1 139 LYS 139 146 146 LYS ALA A . n A 1 140 GLU 140 147 147 GLU GLU A . n A 1 141 LEU 141 148 148 LEU LEU A . n A 1 142 ASN 142 149 149 ASN ASN A . n A 1 143 VAL 143 150 150 VAL VAL A . n A 1 144 MET 144 151 151 MET MET A . n A 1 145 PHE 145 152 152 PHE PHE A . n A 1 146 ILE 146 153 153 ILE ILE A . n A 1 147 GLU 147 154 154 GLU GLU A . n A 1 148 THR 148 155 155 THR THR A . n A 1 149 SER 149 156 156 SER SER A . n A 1 150 ALA 150 157 157 ALA ALA A . n A 1 151 LYS 151 158 158 LYS LYS A . n A 1 152 ALA 152 159 159 ALA ALA A . n A 1 153 GLY 153 160 160 GLY GLY A . n A 1 154 TYR 154 161 161 TYR TYR A . n A 1 155 ASN 155 162 162 ASN ASN A . n A 1 156 VAL 156 163 163 VAL VAL A . n A 1 157 LYS 157 164 164 LYS LYS A . n A 1 158 GLN 158 165 165 GLN GLN A . n A 1 159 LEU 159 166 166 LEU LEU A . n A 1 160 PHE 160 167 167 PHE PHE A . n A 1 161 ARG 161 168 168 ARG ARG A . n A 1 162 ARG 162 169 169 ARG ARG A . n A 1 163 VAL 163 170 170 VAL VAL A . n A 1 164 ALA 164 171 171 ALA ALA A . n A 1 165 ALA 165 172 172 ALA ALA A . n A 1 166 ALA 166 173 173 ALA ALA A . n A 1 167 LEU 167 174 174 LEU LEU A . n A 1 168 PRO 168 175 175 PRO PRO A . n A 1 169 GLY 169 176 176 GLY GLY A . n A 1 170 MET 170 177 177 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 901 201 MG MG A . C 3 GNP 1 900 200 GNP GNP A . D 4 HOH 1 902 1 HOH HOH A . D 4 HOH 2 903 2 HOH HOH A . D 4 HOH 3 904 3 HOH HOH A . D 4 HOH 4 905 6 HOH HOH A . D 4 HOH 5 906 7 HOH HOH A . D 4 HOH 6 907 8 HOH HOH A . D 4 HOH 7 908 9 HOH HOH A . D 4 HOH 8 909 10 HOH HOH A . D 4 HOH 9 910 11 HOH HOH A . D 4 HOH 10 911 12 HOH HOH A . D 4 HOH 11 912 13 HOH HOH A . D 4 HOH 12 913 14 HOH HOH A . D 4 HOH 13 914 18 HOH HOH A . D 4 HOH 14 915 19 HOH HOH A . D 4 HOH 15 916 20 HOH HOH A . D 4 HOH 16 917 21 HOH HOH A . D 4 HOH 17 918 23 HOH HOH A . D 4 HOH 18 919 27 HOH HOH A . D 4 HOH 19 920 28 HOH HOH A . D 4 HOH 20 921 29 HOH HOH A . D 4 HOH 21 922 30 HOH HOH A . D 4 HOH 22 923 31 HOH HOH A . D 4 HOH 23 924 33 HOH HOH A . D 4 HOH 24 925 34 HOH HOH A . D 4 HOH 25 926 35 HOH HOH A . D 4 HOH 26 927 36 HOH HOH A . D 4 HOH 27 928 37 HOH HOH A . D 4 HOH 28 929 38 HOH HOH A . D 4 HOH 29 930 40 HOH HOH A . D 4 HOH 30 931 42 HOH HOH A . D 4 HOH 31 932 43 HOH HOH A . D 4 HOH 32 933 44 HOH HOH A . D 4 HOH 33 934 45 HOH HOH A . D 4 HOH 34 935 46 HOH HOH A . D 4 HOH 35 936 48 HOH HOH A . D 4 HOH 36 937 50 HOH HOH A . D 4 HOH 37 938 52 HOH HOH A . D 4 HOH 38 939 54 HOH HOH A . D 4 HOH 39 940 55 HOH HOH A . D 4 HOH 40 941 56 HOH HOH A . D 4 HOH 41 942 57 HOH HOH A . D 4 HOH 42 943 58 HOH HOH A . D 4 HOH 43 944 59 HOH HOH A . D 4 HOH 44 945 60 HOH HOH A . D 4 HOH 45 946 61 HOH HOH A . D 4 HOH 46 947 62 HOH HOH A . D 4 HOH 47 948 63 HOH HOH A . D 4 HOH 48 949 67 HOH HOH A . D 4 HOH 49 950 68 HOH HOH A . D 4 HOH 50 951 69 HOH HOH A . D 4 HOH 51 952 70 HOH HOH A . D 4 HOH 52 953 72 HOH HOH A . D 4 HOH 53 954 73 HOH HOH A . D 4 HOH 54 955 74 HOH HOH A . D 4 HOH 55 956 75 HOH HOH A . D 4 HOH 56 957 76 HOH HOH A . D 4 HOH 57 958 77 HOH HOH A . D 4 HOH 58 959 78 HOH HOH A . D 4 HOH 59 960 79 HOH HOH A . D 4 HOH 60 961 80 HOH HOH A . D 4 HOH 61 962 81 HOH HOH A . D 4 HOH 62 963 82 HOH HOH A . D 4 HOH 63 964 84 HOH HOH A . D 4 HOH 64 965 85 HOH HOH A . D 4 HOH 65 966 86 HOH HOH A . D 4 HOH 66 967 87 HOH HOH A . D 4 HOH 67 968 88 HOH HOH A . D 4 HOH 68 969 89 HOH HOH A . D 4 HOH 69 970 90 HOH HOH A . D 4 HOH 70 971 91 HOH HOH A . D 4 HOH 71 972 92 HOH HOH A . D 4 HOH 72 973 93 HOH HOH A . D 4 HOH 73 974 94 HOH HOH A . D 4 HOH 74 975 96 HOH HOH A . D 4 HOH 75 976 97 HOH HOH A . D 4 HOH 76 977 99 HOH HOH A . D 4 HOH 77 978 100 HOH HOH A . D 4 HOH 78 979 102 HOH HOH A . D 4 HOH 79 980 103 HOH HOH A . D 4 HOH 80 981 105 HOH HOH A . D 4 HOH 81 982 106 HOH HOH A . D 4 HOH 82 983 109 HOH HOH A . D 4 HOH 83 984 110 HOH HOH A . D 4 HOH 84 985 111 HOH HOH A . D 4 HOH 85 986 112 HOH HOH A . D 4 HOH 86 987 113 HOH HOH A . D 4 HOH 87 988 114 HOH HOH A . D 4 HOH 88 989 115 HOH HOH A . D 4 HOH 89 990 117 HOH HOH A . D 4 HOH 90 991 118 HOH HOH A . D 4 HOH 91 992 119 HOH HOH A . D 4 HOH 92 993 122 HOH HOH A . D 4 HOH 93 994 123 HOH HOH A . D 4 HOH 94 995 124 HOH HOH A . D 4 HOH 95 996 125 HOH HOH A . D 4 HOH 96 997 126 HOH HOH A . D 4 HOH 97 998 129 HOH HOH A . D 4 HOH 98 999 131 HOH HOH A . D 4 HOH 99 1000 132 HOH HOH A . D 4 HOH 100 1001 133 HOH HOH A . D 4 HOH 101 1002 134 HOH HOH A . D 4 HOH 102 1003 135 HOH HOH A . D 4 HOH 103 1004 136 HOH HOH A . D 4 HOH 104 1005 137 HOH HOH A . D 4 HOH 105 1006 139 HOH HOH A . D 4 HOH 106 1007 140 HOH HOH A . D 4 HOH 107 1008 141 HOH HOH A . D 4 HOH 108 1009 143 HOH HOH A . D 4 HOH 109 1010 144 HOH HOH A . D 4 HOH 110 1011 146 HOH HOH A . D 4 HOH 111 1012 147 HOH HOH A . D 4 HOH 112 1013 148 HOH HOH A . D 4 HOH 113 1014 149 HOH HOH A . D 4 HOH 114 1015 152 HOH HOH A . D 4 HOH 115 1016 153 HOH HOH A . D 4 HOH 116 1017 154 HOH HOH A . D 4 HOH 117 1018 157 HOH HOH A . D 4 HOH 118 1019 158 HOH HOH A . D 4 HOH 119 1020 159 HOH HOH A . D 4 HOH 120 1021 160 HOH HOH A . D 4 HOH 121 1022 163 HOH HOH A . D 4 HOH 122 1023 165 HOH HOH A . D 4 HOH 123 1024 166 HOH HOH A . D 4 HOH 124 1025 167 HOH HOH A . D 4 HOH 125 1026 168 HOH HOH A . D 4 HOH 126 1027 175 HOH HOH A . D 4 HOH 127 1028 176 HOH HOH A . D 4 HOH 128 1029 177 HOH HOH A . D 4 HOH 129 1030 178 HOH HOH A . D 4 HOH 130 1031 179 HOH HOH A . D 4 HOH 131 1032 180 HOH HOH A . D 4 HOH 132 1033 181 HOH HOH A . D 4 HOH 133 1034 182 HOH HOH A . D 4 HOH 134 1035 186 HOH HOH A . D 4 HOH 135 1036 187 HOH HOH A . D 4 HOH 136 1037 188 HOH HOH A . D 4 HOH 137 1038 191 HOH HOH A . D 4 HOH 138 1039 193 HOH HOH A . D 4 HOH 139 1040 195 HOH HOH A . D 4 HOH 140 1041 201 HOH HOH A . D 4 HOH 141 1042 203 HOH HOH A . D 4 HOH 142 1043 204 HOH HOH A . D 4 HOH 143 1044 205 HOH HOH A . D 4 HOH 144 1045 208 HOH HOH A . D 4 HOH 145 1046 211 HOH HOH A . D 4 HOH 146 1047 213 HOH HOH A . D 4 HOH 147 1048 214 HOH HOH A . D 4 HOH 148 1049 216 HOH HOH A . D 4 HOH 149 1050 217 HOH HOH A . D 4 HOH 150 1051 219 HOH HOH A . D 4 HOH 151 1052 223 HOH HOH A . D 4 HOH 152 1053 224 HOH HOH A . D 4 HOH 153 1054 225 HOH HOH A . D 4 HOH 154 1055 232 HOH HOH A . D 4 HOH 155 1056 242 HOH HOH A . D 4 HOH 156 1057 244 HOH HOH A . D 4 HOH 157 1058 246 HOH HOH A . D 4 HOH 158 1059 248 HOH HOH A . D 4 HOH 159 1060 255 HOH HOH A . D 4 HOH 160 1061 258 HOH HOH A . D 4 HOH 161 1062 259 HOH HOH A . D 4 HOH 162 1063 261 HOH HOH A . D 4 HOH 163 1064 262 HOH HOH A . D 4 HOH 164 1065 263 HOH HOH A . D 4 HOH 165 1066 266 HOH HOH A . D 4 HOH 166 1067 271 HOH HOH A . D 4 HOH 167 1068 276 HOH HOH A . D 4 HOH 168 1069 278 HOH HOH A . D 4 HOH 169 1070 280 HOH HOH A . D 4 HOH 170 1071 281 HOH HOH A . D 4 HOH 171 1072 282 HOH HOH A . D 4 HOH 172 1073 300 HOH HOH A . D 4 HOH 173 1074 301 HOH HOH A . D 4 HOH 174 1075 303 HOH HOH A . D 4 HOH 175 1076 316 HOH HOH A . D 4 HOH 176 1077 320 HOH HOH A . D 4 HOH 177 1078 322 HOH HOH A . D 4 HOH 178 1079 324 HOH HOH A . D 4 HOH 179 1080 325 HOH HOH A . D 4 HOH 180 1081 359 HOH HOH A . D 4 HOH 181 1082 405 HOH HOH A . D 4 HOH 182 1083 424 HOH HOH A . D 4 HOH 183 1084 426 HOH HOH A . D 4 HOH 184 1085 435 HOH HOH A . D 4 HOH 185 1086 442 HOH HOH A . D 4 HOH 186 1087 470 HOH HOH A . D 4 HOH 187 1088 494 HOH HOH A . D 4 HOH 188 1089 517 HOH HOH A . D 4 HOH 189 1090 559 HOH HOH A . D 4 HOH 190 1091 577 HOH HOH A . D 4 HOH 191 1092 732 HOH HOH A . D 4 HOH 192 1093 736 HOH HOH A . D 4 HOH 193 1094 802 HOH HOH A . D 4 HOH 194 1095 806 HOH HOH A . D 4 HOH 195 1096 824 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 43 ? CG ? A GLN 36 CG 2 1 Y 1 A GLN 43 ? CD ? A GLN 36 CD 3 1 Y 1 A GLN 43 ? OE1 ? A GLN 36 OE1 4 1 Y 1 A GLN 43 ? NE2 ? A GLN 36 NE2 5 1 Y 1 A GLU 58 ? CG ? A GLU 51 CG 6 1 Y 1 A GLU 58 ? CD ? A GLU 51 CD 7 1 Y 1 A GLU 58 ? OE1 ? A GLU 51 OE1 8 1 Y 1 A GLU 58 ? OE2 ? A GLU 51 OE2 9 1 Y 1 A ARG 63 ? CG ? A ARG 56 CG 10 1 Y 1 A ARG 63 ? CD ? A ARG 56 CD 11 1 Y 1 A ARG 63 ? NE ? A ARG 56 NE 12 1 Y 1 A ARG 63 ? CZ ? A ARG 56 CZ 13 1 Y 1 A ARG 63 ? NH1 ? A ARG 56 NH1 14 1 Y 1 A ARG 63 ? NH2 ? A ARG 56 NH2 15 1 Y 1 A GLU 73 ? CG ? A GLU 66 CG 16 1 Y 1 A GLU 73 ? CD ? A GLU 66 CD 17 1 Y 1 A GLU 73 ? OE1 ? A GLU 66 OE1 18 1 Y 1 A GLU 73 ? OE2 ? A GLU 66 OE2 19 1 Y 1 A ARG 76 ? CG ? A ARG 69 CG 20 1 Y 1 A ARG 76 ? CD ? A ARG 69 CD 21 1 Y 1 A ARG 76 ? NE ? A ARG 69 NE 22 1 Y 1 A ARG 76 ? CZ ? A ARG 69 CZ 23 1 Y 1 A ARG 76 ? NH1 ? A ARG 69 NH1 24 1 Y 1 A ARG 76 ? NH2 ? A ARG 69 NH2 25 1 Y 1 A LYS 146 ? CG ? A LYS 139 CG 26 1 Y 1 A LYS 146 ? CD ? A LYS 139 CD 27 1 Y 1 A LYS 146 ? CE ? A LYS 139 CE 28 1 Y 1 A LYS 146 ? NZ ? A LYS 139 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 1YZQ _cell.length_a 40.495 _cell.length_b 68.672 _cell.length_c 73.102 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YZQ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YZQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_percent_sol 54.92 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 278 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '20% PEG 6000, 300mM Magnesium Chloride, 10% glycerol, 50mM HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 278K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2003-05-13 _diffrn_detector.details 'Osmic mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YZQ _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.78 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 20059 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.058 _reflns.pdbx_netI_over_sigmaI 27.7 _reflns.B_iso_Wilson_estimate 36 _reflns.pdbx_redundancy 6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.78 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_all 95.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.282 _reflns_shell.meanI_over_sigI_obs 6.2 _reflns_shell.pdbx_redundancy 5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1576 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YZQ _refine.ls_number_reflns_obs 18499 _refine.ls_number_reflns_all 20187 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.00 _refine.ls_d_res_high 1.78 _refine.ls_percent_reflns_obs 99.51 _refine.ls_R_factor_obs 0.23237 _refine.ls_R_factor_all 0.238 _refine.ls_R_factor_R_work 0.2306 _refine.ls_R_factor_R_free 0.26488 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 992 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.B_iso_mean 27.115 _refine.aniso_B[1][1] -1.43 _refine.aniso_B[2][2] -0.42 _refine.aniso_B[3][3] 1.85 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'Polyalanine Rab3a GTPase' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.146 _refine.pdbx_overall_ESU_R_Free 0.138 _refine.overall_SU_ML 0.093 _refine.overall_SU_B 2.861 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1288 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 195 _refine_hist.number_atoms_total 1516 _refine_hist.d_res_high 1.78 _refine_hist.d_res_low 6.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 1341 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.177 1.978 ? 1821 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.987 5.000 ? 163 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.778 23.729 ? 59 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.088 15.000 ? 231 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.833 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.066 0.200 ? 210 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 980 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.195 0.200 ? 705 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.305 0.200 ? 924 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.127 0.200 ? 169 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.169 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.149 0.200 ? 37 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.150 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.607 1.500 ? 833 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.953 2.000 ? 1308 'X-RAY DIFFRACTION' ? r_scbond_it 1.552 3.000 ? 586 'X-RAY DIFFRACTION' ? r_scangle_it 2.229 4.500 ? 513 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.780 _refine_ls_shell.d_res_low 1.822 _refine_ls_shell.number_reflns_R_work 1197 _refine_ls_shell.R_factor_R_work 0.347 _refine_ls_shell.percent_reflns_obs 93.85 _refine_ls_shell.R_factor_R_free 0.395 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1YZQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YZQ _struct.title 'GppNHp-Bound Rab6 GTPase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YZQ _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'Rab GTPase, Rab6, Vesicular trafficking, Protein transport' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RAB6A_HUMAN _struct_ref.pdbx_db_accession P20340 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAA VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR VAAALPGM ; _struct_ref.pdbx_align_begin 10 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YZQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 170 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20340 _struct_ref_seq.db_align_beg 10 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 177 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 10 _struct_ref_seq.pdbx_auth_seq_align_end 177 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YZQ GLY A 1 ? UNP P20340 ? ? 'cloning artifact' 8 1 1 1YZQ SER A 2 ? UNP P20340 ? ? 'cloning artifact' 9 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 18 ? ASP A 29 ? GLY A 25 ASP A 36 1 ? 12 HELX_P HELX_P2 2 GLN A 65 ? SER A 70 ? GLN A 72 SER A 77 5 ? 6 HELX_P HELX_P3 3 LEU A 71 ? ARG A 77 ? LEU A 78 ARG A 84 1 ? 7 HELX_P HELX_P4 4 ASN A 90 ? GLN A 96 ? ASN A 97 GLN A 103 1 ? 7 HELX_P HELX_P5 5 GLN A 96 ? GLY A 109 ? GLN A 103 GLY A 116 1 ? 14 HELX_P HELX_P6 6 LEU A 123 ? ARG A 127 ? LEU A 130 ARG A 134 5 ? 5 HELX_P HELX_P7 7 SER A 130 ? LEU A 141 ? SER A 137 LEU A 148 1 ? 12 HELX_P HELX_P8 8 ASN A 155 ? LEU A 167 ? ASN A 162 LEU A 174 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A THR 20 OG1 ? ? ? 1_555 B MG . MG ? ? A THR 27 A MG 901 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc2 metalc ? ? A THR 38 OG1 ? ? ? 1_555 B MG . MG ? ? A THR 45 A MG 901 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc3 metalc ? ? C GNP . O2G ? ? ? 1_555 B MG . MG ? ? A GNP 900 A MG 901 1_555 ? ? ? ? ? ? ? 1.821 ? ? metalc4 metalc ? ? C GNP . O2B ? ? ? 1_555 B MG . MG ? ? A GNP 900 A MG 901 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 901 A HOH 933 1_555 ? ? ? ? ? ? ? 2.018 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG1 ? A THR 20 ? A THR 27 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 OG1 ? A THR 38 ? A THR 45 ? 1_555 88.4 ? 2 OG1 ? A THR 20 ? A THR 27 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O2G ? C GNP . ? A GNP 900 ? 1_555 173.9 ? 3 OG1 ? A THR 38 ? A THR 45 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O2G ? C GNP . ? A GNP 900 ? 1_555 92.4 ? 4 OG1 ? A THR 20 ? A THR 27 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O2B ? C GNP . ? A GNP 900 ? 1_555 90.8 ? 5 OG1 ? A THR 38 ? A THR 45 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O2B ? C GNP . ? A GNP 900 ? 1_555 177.9 ? 6 O2G ? C GNP . ? A GNP 900 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O2B ? C GNP . ? A GNP 900 ? 1_555 88.2 ? 7 OG1 ? A THR 20 ? A THR 27 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? D HOH . ? A HOH 933 ? 1_555 92.9 ? 8 OG1 ? A THR 38 ? A THR 45 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? D HOH . ? A HOH 933 ? 1_555 88.2 ? 9 O2G ? C GNP . ? A GNP 900 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? D HOH . ? A HOH 933 ? 1_555 93.2 ? 10 O2B ? C GNP . ? A GNP 900 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? D HOH . ? A HOH 933 ? 1_555 93.8 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 41 ? TYR A 49 ? ILE A 48 TYR A 56 A 2 THR A 54 ? THR A 62 ? THR A 61 THR A 69 A 3 LYS A 8 ? GLY A 13 ? LYS A 15 GLY A 20 A 4 ALA A 81 ? ASP A 87 ? ALA A 88 ASP A 94 A 5 ILE A 113 ? ASN A 119 ? ILE A 120 ASN A 126 A 6 MET A 144 ? GLU A 147 ? MET A 151 GLU A 154 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 44 ? N LEU A 51 O LEU A 59 ? O LEU A 66 A 2 3 O TRP A 60 ? O TRP A 67 N LEU A 9 ? N LEU A 16 A 3 4 N LEU A 12 ? N LEU A 19 O VAL A 83 ? O VAL A 90 A 4 5 N VAL A 84 ? N VAL A 91 O MET A 115 ? O MET A 122 A 5 6 N LEU A 116 ? N LEU A 123 O MET A 144 ? O MET A 151 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 901 ? 4 'BINDING SITE FOR RESIDUE MG A 901' AC2 Software A GNP 900 ? 24 'BINDING SITE FOR RESIDUE GNP A 900' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 THR A 20 ? THR A 27 . ? 1_555 ? 2 AC1 4 THR A 38 ? THR A 45 . ? 1_555 ? 3 AC1 4 GNP C . ? GNP A 900 . ? 1_555 ? 4 AC1 4 HOH D . ? HOH A 933 . ? 1_555 ? 5 AC2 24 GLN A 15 ? GLN A 22 . ? 1_555 ? 6 AC2 24 SER A 16 ? SER A 23 . ? 1_555 ? 7 AC2 24 VAL A 17 ? VAL A 24 . ? 1_555 ? 8 AC2 24 GLY A 18 ? GLY A 25 . ? 1_555 ? 9 AC2 24 LYS A 19 ? LYS A 26 . ? 1_555 ? 10 AC2 24 THR A 20 ? THR A 27 . ? 1_555 ? 11 AC2 24 SER A 21 ? SER A 28 . ? 1_555 ? 12 AC2 24 PHE A 31 ? PHE A 38 . ? 1_555 ? 13 AC2 24 ASP A 32 ? ASP A 39 . ? 1_555 ? 14 AC2 24 ASN A 33 ? ASN A 40 . ? 1_555 ? 15 AC2 24 TYR A 35 ? TYR A 42 . ? 1_555 ? 16 AC2 24 THR A 38 ? THR A 45 . ? 1_555 ? 17 AC2 24 GLY A 64 ? GLY A 71 . ? 1_555 ? 18 AC2 24 ASN A 119 ? ASN A 126 . ? 1_555 ? 19 AC2 24 LYS A 120 ? LYS A 127 . ? 1_555 ? 20 AC2 24 ASP A 122 ? ASP A 129 . ? 1_555 ? 21 AC2 24 LEU A 123 ? LEU A 130 . ? 1_555 ? 22 AC2 24 SER A 149 ? SER A 156 . ? 1_555 ? 23 AC2 24 ALA A 150 ? ALA A 157 . ? 1_555 ? 24 AC2 24 LYS A 151 ? LYS A 158 . ? 1_555 ? 25 AC2 24 MG B . ? MG A 901 . ? 1_555 ? 26 AC2 24 HOH D . ? HOH A 933 . ? 1_555 ? 27 AC2 24 HOH D . ? HOH A 934 . ? 1_555 ? 28 AC2 24 HOH D . ? HOH A 942 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 84 ? ? -39.96 124.92 2 1 ASP A 118 ? ? -86.73 41.16 3 1 LYS A 127 ? ? 80.25 36.08 4 1 LEU A 130 ? ? -93.44 47.07 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 8 ? A GLY 1 2 1 Y 1 A SER 9 ? A SER 2 3 1 Y 1 A PRO 10 ? A PRO 3 4 1 Y 1 A LEU 11 ? A LEU 4 5 1 Y 1 A ARG 12 ? A ARG 5 6 1 Y 1 A LYS 13 ? A LYS 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 GNP PG P N N 123 GNP O1G O N N 124 GNP O2G O N N 125 GNP O3G O N N 126 GNP N3B N N N 127 GNP PB P N R 128 GNP O1B O N N 129 GNP O2B O N N 130 GNP O3A O N N 131 GNP PA P N S 132 GNP O1A O N N 133 GNP O2A O N N 134 GNP "O5'" O N N 135 GNP "C5'" C N N 136 GNP "C4'" C N R 137 GNP "O4'" O N N 138 GNP "C3'" C N S 139 GNP "O3'" O N N 140 GNP "C2'" C N R 141 GNP "O2'" O N N 142 GNP "C1'" C N R 143 GNP N9 N Y N 144 GNP C8 C Y N 145 GNP N7 N Y N 146 GNP C5 C Y N 147 GNP C6 C Y N 148 GNP O6 O N N 149 GNP N1 N Y N 150 GNP C2 C Y N 151 GNP N2 N N N 152 GNP N3 N Y N 153 GNP C4 C Y N 154 GNP HOG2 H N N 155 GNP HOG3 H N N 156 GNP HNB3 H N N 157 GNP HOB2 H N N 158 GNP HOA2 H N N 159 GNP "H5'2" H N N 160 GNP "H5'1" H N N 161 GNP "H4'" H N N 162 GNP "H3'" H N N 163 GNP "HO3'" H N N 164 GNP "H2'" H N N 165 GNP "HO2'" H N N 166 GNP "H1'" H N N 167 GNP H8 H N N 168 GNP HN1 H N N 169 GNP HN21 H N N 170 GNP HN22 H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 MG MG MG N N 264 PHE N N N N 265 PHE CA C N S 266 PHE C C N N 267 PHE O O N N 268 PHE CB C N N 269 PHE CG C Y N 270 PHE CD1 C Y N 271 PHE CD2 C Y N 272 PHE CE1 C Y N 273 PHE CE2 C Y N 274 PHE CZ C Y N 275 PHE OXT O N N 276 PHE H H N N 277 PHE H2 H N N 278 PHE HA H N N 279 PHE HB2 H N N 280 PHE HB3 H N N 281 PHE HD1 H N N 282 PHE HD2 H N N 283 PHE HE1 H N N 284 PHE HE2 H N N 285 PHE HZ H N N 286 PHE HXT H N N 287 PRO N N N N 288 PRO CA C N S 289 PRO C C N N 290 PRO O O N N 291 PRO CB C N N 292 PRO CG C N N 293 PRO CD C N N 294 PRO OXT O N N 295 PRO H H N N 296 PRO HA H N N 297 PRO HB2 H N N 298 PRO HB3 H N N 299 PRO HG2 H N N 300 PRO HG3 H N N 301 PRO HD2 H N N 302 PRO HD3 H N N 303 PRO HXT H N N 304 SER N N N N 305 SER CA C N S 306 SER C C N N 307 SER O O N N 308 SER CB C N N 309 SER OG O N N 310 SER OXT O N N 311 SER H H N N 312 SER H2 H N N 313 SER HA H N N 314 SER HB2 H N N 315 SER HB3 H N N 316 SER HG H N N 317 SER HXT H N N 318 THR N N N N 319 THR CA C N S 320 THR C C N N 321 THR O O N N 322 THR CB C N R 323 THR OG1 O N N 324 THR CG2 C N N 325 THR OXT O N N 326 THR H H N N 327 THR H2 H N N 328 THR HA H N N 329 THR HB H N N 330 THR HG1 H N N 331 THR HG21 H N N 332 THR HG22 H N N 333 THR HG23 H N N 334 THR HXT H N N 335 TRP N N N N 336 TRP CA C N S 337 TRP C C N N 338 TRP O O N N 339 TRP CB C N N 340 TRP CG C Y N 341 TRP CD1 C Y N 342 TRP CD2 C Y N 343 TRP NE1 N Y N 344 TRP CE2 C Y N 345 TRP CE3 C Y N 346 TRP CZ2 C Y N 347 TRP CZ3 C Y N 348 TRP CH2 C Y N 349 TRP OXT O N N 350 TRP H H N N 351 TRP H2 H N N 352 TRP HA H N N 353 TRP HB2 H N N 354 TRP HB3 H N N 355 TRP HD1 H N N 356 TRP HE1 H N N 357 TRP HE3 H N N 358 TRP HZ2 H N N 359 TRP HZ3 H N N 360 TRP HH2 H N N 361 TRP HXT H N N 362 TYR N N N N 363 TYR CA C N S 364 TYR C C N N 365 TYR O O N N 366 TYR CB C N N 367 TYR CG C Y N 368 TYR CD1 C Y N 369 TYR CD2 C Y N 370 TYR CE1 C Y N 371 TYR CE2 C Y N 372 TYR CZ C Y N 373 TYR OH O N N 374 TYR OXT O N N 375 TYR H H N N 376 TYR H2 H N N 377 TYR HA H N N 378 TYR HB2 H N N 379 TYR HB3 H N N 380 TYR HD1 H N N 381 TYR HD2 H N N 382 TYR HE1 H N N 383 TYR HE2 H N N 384 TYR HH H N N 385 TYR HXT H N N 386 VAL N N N N 387 VAL CA C N S 388 VAL C C N N 389 VAL O O N N 390 VAL CB C N N 391 VAL CG1 C N N 392 VAL CG2 C N N 393 VAL OXT O N N 394 VAL H H N N 395 VAL H2 H N N 396 VAL HA H N N 397 VAL HB H N N 398 VAL HG11 H N N 399 VAL HG12 H N N 400 VAL HG13 H N N 401 VAL HG21 H N N 402 VAL HG22 H N N 403 VAL HG23 H N N 404 VAL HXT H N N 405 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 GNP PG O1G doub N N 116 GNP PG O2G sing N N 117 GNP PG O3G sing N N 118 GNP PG N3B sing N N 119 GNP O2G HOG2 sing N N 120 GNP O3G HOG3 sing N N 121 GNP N3B PB sing N N 122 GNP N3B HNB3 sing N N 123 GNP PB O1B doub N N 124 GNP PB O2B sing N N 125 GNP PB O3A sing N N 126 GNP O2B HOB2 sing N N 127 GNP O3A PA sing N N 128 GNP PA O1A doub N N 129 GNP PA O2A sing N N 130 GNP PA "O5'" sing N N 131 GNP O2A HOA2 sing N N 132 GNP "O5'" "C5'" sing N N 133 GNP "C5'" "C4'" sing N N 134 GNP "C5'" "H5'2" sing N N 135 GNP "C5'" "H5'1" sing N N 136 GNP "C4'" "O4'" sing N N 137 GNP "C4'" "C3'" sing N N 138 GNP "C4'" "H4'" sing N N 139 GNP "O4'" "C1'" sing N N 140 GNP "C3'" "O3'" sing N N 141 GNP "C3'" "C2'" sing N N 142 GNP "C3'" "H3'" sing N N 143 GNP "O3'" "HO3'" sing N N 144 GNP "C2'" "O2'" sing N N 145 GNP "C2'" "C1'" sing N N 146 GNP "C2'" "H2'" sing N N 147 GNP "O2'" "HO2'" sing N N 148 GNP "C1'" N9 sing N N 149 GNP "C1'" "H1'" sing N N 150 GNP N9 C8 sing Y N 151 GNP N9 C4 sing Y N 152 GNP C8 N7 doub Y N 153 GNP C8 H8 sing N N 154 GNP N7 C5 sing Y N 155 GNP C5 C6 sing Y N 156 GNP C5 C4 doub Y N 157 GNP C6 O6 doub N N 158 GNP C6 N1 sing Y N 159 GNP N1 C2 sing Y N 160 GNP N1 HN1 sing N N 161 GNP C2 N2 sing N N 162 GNP C2 N3 doub Y N 163 GNP N2 HN21 sing N N 164 GNP N2 HN22 sing N N 165 GNP N3 C4 sing Y N 166 HOH O H1 sing N N 167 HOH O H2 sing N N 168 ILE N CA sing N N 169 ILE N H sing N N 170 ILE N H2 sing N N 171 ILE CA C sing N N 172 ILE CA CB sing N N 173 ILE CA HA sing N N 174 ILE C O doub N N 175 ILE C OXT sing N N 176 ILE CB CG1 sing N N 177 ILE CB CG2 sing N N 178 ILE CB HB sing N N 179 ILE CG1 CD1 sing N N 180 ILE CG1 HG12 sing N N 181 ILE CG1 HG13 sing N N 182 ILE CG2 HG21 sing N N 183 ILE CG2 HG22 sing N N 184 ILE CG2 HG23 sing N N 185 ILE CD1 HD11 sing N N 186 ILE CD1 HD12 sing N N 187 ILE CD1 HD13 sing N N 188 ILE OXT HXT sing N N 189 LEU N CA sing N N 190 LEU N H sing N N 191 LEU N H2 sing N N 192 LEU CA C sing N N 193 LEU CA CB sing N N 194 LEU CA HA sing N N 195 LEU C O doub N N 196 LEU C OXT sing N N 197 LEU CB CG sing N N 198 LEU CB HB2 sing N N 199 LEU CB HB3 sing N N 200 LEU CG CD1 sing N N 201 LEU CG CD2 sing N N 202 LEU CG HG sing N N 203 LEU CD1 HD11 sing N N 204 LEU CD1 HD12 sing N N 205 LEU CD1 HD13 sing N N 206 LEU CD2 HD21 sing N N 207 LEU CD2 HD22 sing N N 208 LEU CD2 HD23 sing N N 209 LEU OXT HXT sing N N 210 LYS N CA sing N N 211 LYS N H sing N N 212 LYS N H2 sing N N 213 LYS CA C sing N N 214 LYS CA CB sing N N 215 LYS CA HA sing N N 216 LYS C O doub N N 217 LYS C OXT sing N N 218 LYS CB CG sing N N 219 LYS CB HB2 sing N N 220 LYS CB HB3 sing N N 221 LYS CG CD sing N N 222 LYS CG HG2 sing N N 223 LYS CG HG3 sing N N 224 LYS CD CE sing N N 225 LYS CD HD2 sing N N 226 LYS CD HD3 sing N N 227 LYS CE NZ sing N N 228 LYS CE HE2 sing N N 229 LYS CE HE3 sing N N 230 LYS NZ HZ1 sing N N 231 LYS NZ HZ2 sing N N 232 LYS NZ HZ3 sing N N 233 LYS OXT HXT sing N N 234 MET N CA sing N N 235 MET N H sing N N 236 MET N H2 sing N N 237 MET CA C sing N N 238 MET CA CB sing N N 239 MET CA HA sing N N 240 MET C O doub N N 241 MET C OXT sing N N 242 MET CB CG sing N N 243 MET CB HB2 sing N N 244 MET CB HB3 sing N N 245 MET CG SD sing N N 246 MET CG HG2 sing N N 247 MET CG HG3 sing N N 248 MET SD CE sing N N 249 MET CE HE1 sing N N 250 MET CE HE2 sing N N 251 MET CE HE3 sing N N 252 MET OXT HXT sing N N 253 PHE N CA sing N N 254 PHE N H sing N N 255 PHE N H2 sing N N 256 PHE CA C sing N N 257 PHE CA CB sing N N 258 PHE CA HA sing N N 259 PHE C O doub N N 260 PHE C OXT sing N N 261 PHE CB CG sing N N 262 PHE CB HB2 sing N N 263 PHE CB HB3 sing N N 264 PHE CG CD1 doub Y N 265 PHE CG CD2 sing Y N 266 PHE CD1 CE1 sing Y N 267 PHE CD1 HD1 sing N N 268 PHE CD2 CE2 doub Y N 269 PHE CD2 HD2 sing N N 270 PHE CE1 CZ doub Y N 271 PHE CE1 HE1 sing N N 272 PHE CE2 CZ sing Y N 273 PHE CE2 HE2 sing N N 274 PHE CZ HZ sing N N 275 PHE OXT HXT sing N N 276 PRO N CA sing N N 277 PRO N CD sing N N 278 PRO N H sing N N 279 PRO CA C sing N N 280 PRO CA CB sing N N 281 PRO CA HA sing N N 282 PRO C O doub N N 283 PRO C OXT sing N N 284 PRO CB CG sing N N 285 PRO CB HB2 sing N N 286 PRO CB HB3 sing N N 287 PRO CG CD sing N N 288 PRO CG HG2 sing N N 289 PRO CG HG3 sing N N 290 PRO CD HD2 sing N N 291 PRO CD HD3 sing N N 292 PRO OXT HXT sing N N 293 SER N CA sing N N 294 SER N H sing N N 295 SER N H2 sing N N 296 SER CA C sing N N 297 SER CA CB sing N N 298 SER CA HA sing N N 299 SER C O doub N N 300 SER C OXT sing N N 301 SER CB OG sing N N 302 SER CB HB2 sing N N 303 SER CB HB3 sing N N 304 SER OG HG sing N N 305 SER OXT HXT sing N N 306 THR N CA sing N N 307 THR N H sing N N 308 THR N H2 sing N N 309 THR CA C sing N N 310 THR CA CB sing N N 311 THR CA HA sing N N 312 THR C O doub N N 313 THR C OXT sing N N 314 THR CB OG1 sing N N 315 THR CB CG2 sing N N 316 THR CB HB sing N N 317 THR OG1 HG1 sing N N 318 THR CG2 HG21 sing N N 319 THR CG2 HG22 sing N N 320 THR CG2 HG23 sing N N 321 THR OXT HXT sing N N 322 TRP N CA sing N N 323 TRP N H sing N N 324 TRP N H2 sing N N 325 TRP CA C sing N N 326 TRP CA CB sing N N 327 TRP CA HA sing N N 328 TRP C O doub N N 329 TRP C OXT sing N N 330 TRP CB CG sing N N 331 TRP CB HB2 sing N N 332 TRP CB HB3 sing N N 333 TRP CG CD1 doub Y N 334 TRP CG CD2 sing Y N 335 TRP CD1 NE1 sing Y N 336 TRP CD1 HD1 sing N N 337 TRP CD2 CE2 doub Y N 338 TRP CD2 CE3 sing Y N 339 TRP NE1 CE2 sing Y N 340 TRP NE1 HE1 sing N N 341 TRP CE2 CZ2 sing Y N 342 TRP CE3 CZ3 doub Y N 343 TRP CE3 HE3 sing N N 344 TRP CZ2 CH2 doub Y N 345 TRP CZ2 HZ2 sing N N 346 TRP CZ3 CH2 sing Y N 347 TRP CZ3 HZ3 sing N N 348 TRP CH2 HH2 sing N N 349 TRP OXT HXT sing N N 350 TYR N CA sing N N 351 TYR N H sing N N 352 TYR N H2 sing N N 353 TYR CA C sing N N 354 TYR CA CB sing N N 355 TYR CA HA sing N N 356 TYR C O doub N N 357 TYR C OXT sing N N 358 TYR CB CG sing N N 359 TYR CB HB2 sing N N 360 TYR CB HB3 sing N N 361 TYR CG CD1 doub Y N 362 TYR CG CD2 sing Y N 363 TYR CD1 CE1 sing Y N 364 TYR CD1 HD1 sing N N 365 TYR CD2 CE2 doub Y N 366 TYR CD2 HD2 sing N N 367 TYR CE1 CZ doub Y N 368 TYR CE1 HE1 sing N N 369 TYR CE2 CZ sing Y N 370 TYR CE2 HE2 sing N N 371 TYR CZ OH sing N N 372 TYR OH HH sing N N 373 TYR OXT HXT sing N N 374 VAL N CA sing N N 375 VAL N H sing N N 376 VAL N H2 sing N N 377 VAL CA C sing N N 378 VAL CA CB sing N N 379 VAL CA HA sing N N 380 VAL C O doub N N 381 VAL C OXT sing N N 382 VAL CB CG1 sing N N 383 VAL CB CG2 sing N N 384 VAL CB HB sing N N 385 VAL CG1 HG11 sing N N 386 VAL CG1 HG12 sing N N 387 VAL CG1 HG13 sing N N 388 VAL CG2 HG21 sing N N 389 VAL CG2 HG22 sing N N 390 VAL CG2 HG23 sing N N 391 VAL OXT HXT sing N N 392 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Polyalanine Rab3a GTPase' # _atom_sites.entry_id 1YZQ _atom_sites.fract_transf_matrix[1][1] 0.024694 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014562 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013680 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_