data_220D # _entry.id 220D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 220D pdb_0000220d 10.2210/pdb220d/pdb RCSB ADJ066 ? ? WWPDB D_1000177589 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-01-31 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 220D _pdbx_database_status.recvd_initial_deposition_date 1995-06-26 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Y.-G.' 1 'Robinson, H.' 2 'Van Boom, J.H.' 3 'Wang, A.H.-J.' 4 # _citation.id primary _citation.title 'Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA.' _citation.journal_abbrev Biophys.J. _citation.journal_volume 69 _citation.page_first 559 _citation.page_last 568 _citation.year 1995 _citation.journal_id_ASTM BIOJAU _citation.country US _citation.journal_id_ISSN 0006-3495 _citation.journal_id_CSD 0030 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8527670 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, Y.G.' 1 ? primary 'Robinson, H.' 2 ? primary 'van Boom, J.H.' 3 ? primary 'Wang, A.H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*CP*CP*CP*GP*CP*GP*GP*GP*T)-3') ; 3045.992 1 ? ? ? ? 2 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 3 water nat water 18.015 48 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DC)(DC)(DC)(DG)(DC)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ACCCGCGGGT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BARIUM ION' BA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DT 10 10 10 DT T A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BA 1 11 11 BA BA A . C 3 HOH 1 12 12 HOH HOH A . C 3 HOH 2 13 13 HOH HOH A . C 3 HOH 3 14 14 HOH HOH A . C 3 HOH 4 15 15 HOH HOH A . C 3 HOH 5 16 16 HOH HOH A . C 3 HOH 6 17 17 HOH HOH A . C 3 HOH 7 18 18 HOH HOH A . C 3 HOH 8 19 19 HOH HOH A . C 3 HOH 9 20 20 HOH HOH A . C 3 HOH 10 21 21 HOH HOH A . C 3 HOH 11 22 22 HOH HOH A . C 3 HOH 12 23 23 HOH HOH A . C 3 HOH 13 24 24 HOH HOH A . C 3 HOH 14 25 25 HOH HOH A . C 3 HOH 15 26 26 HOH HOH A . C 3 HOH 16 27 27 HOH HOH A . C 3 HOH 17 28 28 HOH HOH A . C 3 HOH 18 29 29 HOH HOH A . C 3 HOH 19 30 30 HOH HOH A . C 3 HOH 20 31 31 HOH HOH A . C 3 HOH 21 32 32 HOH HOH A . C 3 HOH 22 33 33 HOH HOH A . C 3 HOH 23 34 34 HOH HOH A . C 3 HOH 24 35 35 HOH HOH A . C 3 HOH 25 36 36 HOH HOH A . C 3 HOH 26 37 37 HOH HOH A . C 3 HOH 27 38 38 HOH HOH A . C 3 HOH 28 39 39 HOH HOH A . C 3 HOH 29 40 40 HOH HOH A . C 3 HOH 30 41 41 HOH HOH A . C 3 HOH 31 42 42 HOH HOH A . C 3 HOH 32 43 43 HOH HOH A . C 3 HOH 33 44 44 HOH HOH A . C 3 HOH 34 45 45 HOH HOH A . C 3 HOH 35 46 46 HOH HOH A . C 3 HOH 36 47 47 HOH HOH A . C 3 HOH 37 48 48 HOH HOH A . C 3 HOH 38 49 49 HOH HOH A . C 3 HOH 39 50 50 HOH HOH A . C 3 HOH 40 51 51 HOH HOH A . C 3 HOH 41 52 52 HOH HOH A . C 3 HOH 42 53 53 HOH HOH A . C 3 HOH 43 54 54 HOH HOH A . C 3 HOH 44 55 55 HOH HOH A . C 3 HOH 45 56 56 HOH HOH A . C 3 HOH 46 57 57 HOH HOH A . C 3 HOH 47 58 58 HOH HOH A . C 3 HOH 48 59 59 HOH HOH A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 220D _cell.length_a 40.123 _cell.length_b 40.123 _cell.length_c 78.224 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 220D _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # _exptl.entry_id 220D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.98 _exptl_crystal.density_percent_sol 58.78 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 BA2+ ? ? ? 1 5 3 WATER ? ? ? 1 6 3 BA2+ ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 220D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.000 _reflns.number_obs 1817 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 220D _refine.ls_number_reflns_obs 1817 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2060000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 251 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.025 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 220D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 220D _struct.title 'INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 220D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 220D _struct_ref.pdbx_db_accession 220D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 220D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 220D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 39.1120000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 A DT 10 N3 ? ? A DA 1 A DT 10 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 A DT 10 O4 ? ? A DA 1 A DT 10 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 3 A DG 8 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 3 A DG 8 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 3 A DG 8 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 4 A DG 7 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 4 A DG 7 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 4 A DG 7 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 5 A DC 6 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 5 A DC 6 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 5 A DC 6 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 6 A DG 5 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 6 A DG 5 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 6 A DG 5 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 7 A DC 4 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 7 A DC 4 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 7 A DC 4 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 8 A DC 3 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 8 A DC 3 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 8 A DC 3 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 1 N1 ? ? A DT 10 A DA 1 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 1 N6 ? ? A DT 10 A DA 1 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BA _struct_site.pdbx_auth_seq_id 11 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE BA A 11' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DG A 7 ? DG A 7 . ? 7_555 ? 2 AC1 2 DG A 8 ? DG A 8 . ? 7_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 14 ? ? 1_555 O A HOH 14 ? ? 11_555 1.36 2 1 O A HOH 24 ? ? 1_555 O A HOH 24 ? ? 12_555 1.83 3 1 O A HOH 53 ? ? 1_555 O A HOH 53 ? ? 10_665 1.84 4 1 O A HOH 26 ? ? 1_555 O A HOH 26 ? ? 12_565 1.93 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C6 A DA 1 ? ? N1 A DA 1 ? ? 1.300 1.351 -0.051 0.007 N 2 1 C5 A DA 1 ? ? N7 A DA 1 ? ? 1.349 1.388 -0.039 0.006 N 3 1 P A DC 2 ? ? "O5'" A DC 2 ? ? 1.497 1.593 -0.096 0.010 N 4 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 1.369 1.446 -0.077 0.010 N 5 1 C4 A DC 3 ? ? C5 A DC 3 ? ? 1.355 1.425 -0.070 0.008 N 6 1 P A DC 4 ? ? "O5'" A DC 4 ? ? 1.674 1.593 0.081 0.010 N 7 1 "C3'" A DC 4 ? ? "C2'" A DC 4 ? ? 1.630 1.518 0.112 0.012 N 8 1 "C2'" A DC 4 ? ? "C1'" A DC 4 ? ? 1.431 1.518 -0.087 0.010 N 9 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? 1.489 1.420 0.069 0.011 N 10 1 "O3'" A DC 4 ? ? P A DG 5 ? ? 1.523 1.607 -0.084 0.012 Y 11 1 P A DG 5 ? ? OP1 A DG 5 ? ? 1.627 1.485 0.142 0.017 N 12 1 C8 A DG 5 ? ? N9 A DG 5 ? ? 1.314 1.374 -0.060 0.007 N 13 1 P A DC 6 ? ? OP1 A DC 6 ? ? 1.588 1.485 0.103 0.017 N 14 1 P A DC 6 ? ? "O5'" A DC 6 ? ? 1.525 1.593 -0.068 0.010 N 15 1 "C5'" A DC 6 ? ? "C4'" A DC 6 ? ? 1.580 1.512 0.068 0.007 N 16 1 "C2'" A DC 6 ? ? "C1'" A DC 6 ? ? 1.435 1.518 -0.083 0.010 N 17 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? 1.498 1.420 0.078 0.011 N 18 1 "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? 1.375 1.446 -0.071 0.010 N 19 1 "O3'" A DC 6 ? ? "C3'" A DC 6 ? ? 1.377 1.419 -0.042 0.006 N 20 1 N3 A DC 6 ? ? C4 A DC 6 ? ? 1.391 1.335 0.056 0.007 N 21 1 "C5'" A DG 7 ? ? "C4'" A DG 7 ? ? 1.579 1.512 0.067 0.007 N 22 1 "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 1.433 1.521 -0.088 0.010 N 23 1 C8 A DG 7 ? ? N9 A DG 7 ? ? 1.329 1.374 -0.045 0.007 N 24 1 P A DG 8 ? ? OP1 A DG 8 ? ? 1.589 1.485 0.104 0.017 N 25 1 "C5'" A DG 8 ? ? "C4'" A DG 8 ? ? 1.577 1.512 0.065 0.007 N 26 1 "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 1.458 1.521 -0.063 0.010 N 27 1 C8 A DG 9 ? ? N9 A DG 9 ? ? 1.328 1.374 -0.046 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DA 1 ? ? "C5'" A DA 1 ? ? "C4'" A DA 1 ? ? 102.99 109.40 -6.41 0.80 N 2 1 C6 A DA 1 ? ? N1 A DA 1 ? ? C2 A DA 1 ? ? 123.00 118.60 4.40 0.60 N 3 1 N1 A DA 1 ? ? C2 A DA 1 ? ? N3 A DA 1 ? ? 124.25 129.30 -5.05 0.50 N 4 1 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 128.57 118.60 9.97 0.60 N 5 1 C5 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 115.03 123.70 -8.67 0.80 N 6 1 "O3'" A DA 1 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 89.91 105.20 -15.29 2.20 Y 7 1 "O3'" A DA 1 ? ? P A DC 2 ? ? OP1 A DC 2 ? ? 120.30 110.50 9.80 1.10 Y 8 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 100.91 104.50 -3.59 0.40 N 9 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 103.15 108.00 -4.85 0.70 N 10 1 N3 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 112.26 118.00 -5.74 0.70 N 11 1 C5 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 127.99 120.20 7.79 0.70 N 12 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 100.59 109.40 -8.81 0.80 N 13 1 P A DC 3 ? ? "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? 100.76 120.90 -20.14 1.60 N 14 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.61 108.30 2.31 0.30 N 15 1 N3 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 113.33 118.00 -4.67 0.70 N 16 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DC 4 ? ? 108.75 119.70 -10.95 1.20 Y 17 1 "O3'" A DC 3 ? ? P A DC 4 ? ? "O5'" A DC 4 ? ? 88.90 104.00 -15.10 1.90 Y 18 1 OP1 A DC 4 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 138.90 119.60 19.30 1.50 N 19 1 P A DC 4 ? ? "O5'" A DC 4 ? ? "C5'" A DC 4 ? ? 109.31 120.90 -11.59 1.60 N 20 1 OP1 A DG 5 ? ? P A DG 5 ? ? OP2 A DG 5 ? ? 98.97 119.60 -20.63 1.50 N 21 1 "O5'" A DG 5 ? ? P A DG 5 ? ? OP1 A DG 5 ? ? 97.47 105.70 -8.23 0.90 N 22 1 "O5'" A DG 5 ? ? P A DG 5 ? ? OP2 A DG 5 ? ? 140.81 110.70 30.11 1.20 N 23 1 "O5'" A DG 5 ? ? "C5'" A DG 5 ? ? "C4'" A DG 5 ? ? 102.34 109.40 -7.06 0.80 N 24 1 P A DG 5 ? ? "O5'" A DG 5 ? ? "C5'" A DG 5 ? ? 101.86 120.90 -19.04 1.60 N 25 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.45 108.30 3.15 0.30 N 26 1 C6 A DG 5 ? ? N1 A DG 5 ? ? C2 A DG 5 ? ? 118.08 125.10 -7.02 0.60 N 27 1 N3 A DG 5 ? ? C4 A DG 5 ? ? C5 A DG 5 ? ? 125.54 128.60 -3.06 0.50 N 28 1 C5 A DG 5 ? ? C6 A DG 5 ? ? N1 A DG 5 ? ? 116.19 111.50 4.69 0.50 N 29 1 N1 A DG 5 ? ? C6 A DG 5 ? ? O6 A DG 5 ? ? 112.00 119.90 -7.90 0.60 N 30 1 OP1 A DC 6 ? ? P A DC 6 ? ? OP2 A DC 6 ? ? 103.44 119.60 -16.16 1.50 N 31 1 "O5'" A DC 6 ? ? P A DC 6 ? ? OP1 A DC 6 ? ? 96.85 105.70 -8.85 0.90 N 32 1 "O5'" A DC 6 ? ? P A DC 6 ? ? OP2 A DC 6 ? ? 136.84 110.70 26.14 1.20 N 33 1 "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? 101.17 104.50 -3.33 0.40 N 34 1 "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? "C1'" A DC 6 ? ? 96.23 102.40 -6.17 0.80 N 35 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 102.39 108.00 -5.61 0.70 N 36 1 C6 A DC 6 ? ? N1 A DC 6 ? ? C2 A DC 6 ? ? 124.31 120.30 4.01 0.40 N 37 1 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DG 7 ? ? 109.22 119.70 -10.48 1.20 Y 38 1 OP1 A DG 7 ? ? P A DG 7 ? ? OP2 A DG 7 ? ? 133.60 119.60 14.00 1.50 N 39 1 "O5'" A DG 7 ? ? P A DG 7 ? ? OP1 A DG 7 ? ? 97.79 105.70 -7.91 0.90 N 40 1 "O5'" A DG 7 ? ? "C5'" A DG 7 ? ? "C4'" A DG 7 ? ? 101.88 109.40 -7.52 0.80 N 41 1 P A DG 7 ? ? "O5'" A DG 7 ? ? "C5'" A DG 7 ? ? 109.22 120.90 -11.68 1.60 N 42 1 C5 A DG 7 ? ? C6 A DG 7 ? ? N1 A DG 7 ? ? 115.33 111.50 3.83 0.50 N 43 1 N1 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 112.07 119.90 -7.83 0.60 N 44 1 C5 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 132.55 128.60 3.95 0.60 N 45 1 "O3'" A DG 7 ? ? P A DG 8 ? ? OP2 A DG 8 ? ? 135.01 110.50 24.51 1.10 Y 46 1 "O5'" A DG 8 ? ? P A DG 8 ? ? OP1 A DG 8 ? ? 99.57 105.70 -6.13 0.90 N 47 1 "O5'" A DG 8 ? ? P A DG 8 ? ? OP2 A DG 8 ? ? 95.79 105.70 -9.91 0.90 N 48 1 "O5'" A DG 8 ? ? "C5'" A DG 8 ? ? "C4'" A DG 8 ? ? 98.91 109.40 -10.49 0.80 N 49 1 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 97.37 102.40 -5.03 0.80 N 50 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.73 108.30 2.43 0.30 N 51 1 C6 A DG 8 ? ? N1 A DG 8 ? ? C2 A DG 8 ? ? 121.44 125.10 -3.66 0.60 N 52 1 C5 A DG 8 ? ? C6 A DG 8 ? ? N1 A DG 8 ? ? 115.87 111.50 4.37 0.50 N 53 1 C6 A DG 8 ? ? C5 A DG 8 ? ? N7 A DG 8 ? ? 134.24 130.40 3.84 0.60 N 54 1 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 114.03 119.90 -5.87 0.60 N 55 1 "O5'" A DG 9 ? ? P A DG 9 ? ? OP2 A DG 9 ? ? 118.41 110.70 7.71 1.20 N 56 1 P A DG 9 ? ? "O5'" A DG 9 ? ? "C5'" A DG 9 ? ? 109.14 120.90 -11.76 1.60 N 57 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.69 108.30 4.39 0.30 N 58 1 C4 A DG 9 ? ? C5 A DG 9 ? ? N7 A DG 9 ? ? 107.37 110.80 -3.43 0.40 N 59 1 N3 A DG 9 ? ? C2 A DG 9 ? ? N2 A DG 9 ? ? 114.72 119.90 -5.18 0.70 N 60 1 N1 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 115.24 119.90 -4.66 0.60 N 61 1 "C3'" A DG 9 ? ? "O3'" A DG 9 ? ? P A DT 10 ? ? 143.96 119.70 24.26 1.20 Y 62 1 OP1 A DT 10 ? ? P A DT 10 ? ? OP2 A DT 10 ? ? 138.24 119.60 18.64 1.50 N 63 1 P A DT 10 ? ? "O5'" A DT 10 ? ? "C5'" A DT 10 ? ? 111.22 120.90 -9.68 1.60 N 64 1 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 112.07 108.30 3.77 0.30 N 65 1 C2 A DT 10 ? ? N3 A DT 10 ? ? C4 A DT 10 ? ? 119.40 127.20 -7.80 0.60 N 66 1 N3 A DT 10 ? ? C4 A DT 10 ? ? C5 A DT 10 ? ? 122.13 115.20 6.93 0.60 N 67 1 N3 A DT 10 ? ? C4 A DT 10 ? ? O4 A DT 10 ? ? 111.73 119.90 -8.17 0.60 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 220D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 A DT 10 11_555 0.140 -0.342 0.008 0.573 -16.043 -10.376 1 A_DA1:DT10_A A 1 ? A 10 ? 20 1 1 A DC 2 1_555 A DG 9 11_555 -0.021 -0.073 -0.237 9.471 -9.145 3.108 2 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DC 3 1_555 A DG 8 11_555 0.047 -0.169 -0.265 13.518 -11.335 -2.738 3 A_DC3:DG8_A A 3 ? A 8 ? 19 1 1 A DC 4 1_555 A DG 7 11_555 -0.152 -0.068 -0.294 11.244 -15.236 -0.450 4 A_DC4:DG7_A A 4 ? A 7 ? 19 1 1 A DG 5 1_555 A DC 6 11_555 0.521 -0.169 -0.048 -0.436 -16.965 0.783 5 A_DG5:DC6_A A 5 ? A 6 ? 19 1 1 A DC 6 1_555 A DG 5 11_555 -0.521 -0.169 -0.048 0.436 -16.965 0.783 6 A_DC6:DG5_A A 6 ? A 5 ? 19 1 1 A DG 7 1_555 A DC 4 11_555 0.152 -0.068 -0.294 -11.244 -15.236 -0.450 7 A_DG7:DC4_A A 7 ? A 4 ? 19 1 1 A DG 8 1_555 A DC 3 11_555 -0.047 -0.169 -0.265 -13.518 -11.335 -2.738 8 A_DG8:DC3_A A 8 ? A 3 ? 19 1 1 A DG 9 1_555 A DC 2 11_555 0.021 -0.073 -0.237 -9.471 -9.145 3.108 9 A_DG9:DC2_A A 9 ? A 2 ? 19 1 1 A DT 10 1_555 A DA 1 11_555 -0.140 -0.342 0.008 -0.573 -16.043 -10.376 10 A_DT10:DA1_A A 10 ? A 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 A DT 10 11_555 A DC 2 1_555 A DG 9 11_555 1.047 -1.165 3.150 1.204 8.327 29.173 -3.772 -1.777 2.760 16.113 -2.330 30.337 1 AA_DA1DC2:DG9DT10_AA A 1 ? A 10 ? A 2 ? A 9 ? 1 A DC 2 1_555 A DG 9 11_555 A DC 3 1_555 A DG 8 11_555 -0.468 -1.564 3.265 -3.392 11.320 31.967 -4.348 0.297 2.612 19.732 5.912 34.028 2 AA_DC2DC3:DG8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DC 3 1_555 A DG 8 11_555 A DC 4 1_555 A DG 7 11_555 -0.484 -1.634 3.526 -3.707 2.870 25.949 -4.398 0.008 3.364 6.325 8.170 26.362 3 AA_DC3DC4:DG7DG8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DC 4 1_555 A DG 7 11_555 A DG 5 1_555 A DC 6 11_555 -0.470 -1.737 3.547 -2.230 11.976 38.559 -3.885 0.426 2.923 17.608 3.279 40.367 4 AA_DC4DG5:DC6DG7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DG 5 1_555 A DC 6 11_555 A DC 6 1_555 A DG 5 11_555 0.000 -1.234 3.314 0.000 9.161 27.441 -4.414 0.000 2.766 18.663 0.000 28.902 5 AA_DG5DC6:DG5DC6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DC 6 1_555 A DG 5 11_555 A DG 7 1_555 A DC 4 11_555 0.470 -1.737 3.547 2.230 11.976 38.559 -3.885 -0.426 2.923 17.608 -3.278 40.367 6 AA_DC6DG7:DC4DG5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DG 7 1_555 A DC 4 11_555 A DG 8 1_555 A DC 3 11_555 0.484 -1.634 3.526 3.707 2.870 25.949 -4.398 -0.008 3.364 6.325 -8.170 26.362 7 AA_DG7DG8:DC3DC4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DG 8 1_555 A DC 3 11_555 A DG 9 1_555 A DC 2 11_555 0.468 -1.564 3.265 3.392 11.320 31.967 -4.348 -0.297 2.612 19.732 -5.912 34.028 8 AA_DG8DG9:DC2DC3_AA A 8 ? A 3 ? A 9 ? A 2 ? 1 A DG 9 1_555 A DC 2 11_555 A DT 10 1_555 A DA 1 11_555 -1.047 -1.165 3.150 -1.204 8.327 29.173 -3.772 1.777 2.760 16.113 2.330 30.337 9 AA_DG9DT10:DA1DC2_AA A 9 ? A 2 ? A 10 ? A 1 ? # _atom_sites.entry_id 220D _atom_sites.fract_transf_matrix[1][1] 0.024923 _atom_sites.fract_transf_matrix[1][2] 0.014390 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028779 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012784 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C N O P # loop_