data_255D # _entry.id 255D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 255D pdb_0000255d 10.2210/pdb255d/pdb RCSB ARL037 ? ? WWPDB D_1000177662 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-02-07 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 255D _pdbx_database_status.recvd_initial_deposition_date 1993-12-21 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Holbrook, S.R.' 1 'Cheong, C.' 2 'Tinoco Jr, I.' 3 'Kim, S.-H.' 4 # _citation.id primary _citation.title 'Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs.' _citation.journal_abbrev Nature _citation.journal_volume 353 _citation.page_first 579 _citation.page_last 581 _citation.year 1991 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1922368 _citation.pdbx_database_id_DOI 10.1038/353579a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Holbrook, S.R.' 1 ? primary 'Cheong, C.' 2 ? primary 'Tinoco Jr., I.' 3 ? primary 'Kim, S.H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*C)-3') ; 3804.296 1 ? ? ? ? 2 water nat water 18.015 47 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACUUCGGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACUUCGGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 U n 1 6 U n 1 7 C n 1 8 G n 1 9 G n 1 10 U n 1 11 C n 1 12 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 G 9 9 9 G G A . n A 1 10 U 10 10 10 U U A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 13 13 HOH HOH A . B 2 HOH 2 14 14 HOH HOH A . B 2 HOH 3 15 15 HOH HOH A . B 2 HOH 4 16 16 HOH HOH A . B 2 HOH 5 17 17 HOH HOH A . B 2 HOH 6 18 18 HOH HOH A . B 2 HOH 7 19 19 HOH HOH A . B 2 HOH 8 20 20 HOH HOH A . B 2 HOH 9 21 21 HOH HOH A . B 2 HOH 10 22 22 HOH HOH A . B 2 HOH 11 23 23 HOH HOH A . B 2 HOH 12 24 24 HOH HOH A . B 2 HOH 13 25 25 HOH HOH A . B 2 HOH 14 26 26 HOH HOH A . B 2 HOH 15 27 27 HOH HOH A . B 2 HOH 16 28 28 HOH HOH A . B 2 HOH 17 29 29 HOH HOH A . B 2 HOH 18 30 30 HOH HOH A . B 2 HOH 19 31 31 HOH HOH A . B 2 HOH 20 32 32 HOH HOH A . B 2 HOH 21 33 33 HOH HOH A . B 2 HOH 22 34 34 HOH HOH A . B 2 HOH 23 35 35 HOH HOH A . B 2 HOH 24 36 36 HOH HOH A . B 2 HOH 25 37 37 HOH HOH A . B 2 HOH 26 38 38 HOH HOH A . B 2 HOH 27 39 39 HOH HOH A . B 2 HOH 28 40 40 HOH HOH A . B 2 HOH 29 41 41 HOH HOH A . B 2 HOH 30 42 42 HOH HOH A . B 2 HOH 31 43 43 HOH HOH A . B 2 HOH 32 44 44 HOH HOH A . B 2 HOH 33 45 45 HOH HOH A . B 2 HOH 34 46 46 HOH HOH A . B 2 HOH 35 47 47 HOH HOH A . B 2 HOH 36 48 48 HOH HOH A . B 2 HOH 37 49 49 HOH HOH A . B 2 HOH 38 50 50 HOH HOH A . B 2 HOH 39 51 51 HOH HOH A . B 2 HOH 40 52 52 HOH HOH A . B 2 HOH 41 53 53 HOH HOH A . B 2 HOH 42 54 54 HOH HOH A . B 2 HOH 43 55 55 HOH HOH A . B 2 HOH 44 56 56 HOH HOH A . B 2 HOH 45 57 57 HOH HOH A . B 2 HOH 46 58 58 HOH HOH A . B 2 HOH 47 59 59 HOH HOH A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 255D _cell.length_a 38.280 _cell.length_b 32.280 _cell.length_c 36.380 _cell.angle_alpha 90.00 _cell.angle_beta 124.80 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 255D _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 255D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.30 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.50 _exptl_crystal_grow.pdbx_details 'pH 8.50, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'PEG 400' ? ? ? 1 3 1 'NA CITRATE' ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 BIS-TRIS-PROPANE ? ? ? 1 6 2 WATER ? ? ? 1 7 2 'PEG 400' ? ? ? 1 8 2 'NA CITRATE' ? ? ? 1 9 2 MGCL2 ? ? ? 1 10 2 BIS-TRIS-PROPANE ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 255D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.000 _reflns.number_obs 2280 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 255D _refine.ls_number_reflns_obs 2082 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 83.900 _refine.ls_R_factor_obs 0.1640000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 255 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 302 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 8.000 # _database_PDB_matrix.entry_id 255D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 255D _struct.title 'CRYSTAL STRUCTURE OF AN RNA DOUBLE HELIX INCORPORATING A TRACK OF NON-WATSON-CRICK BASE PAIRS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 255D _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'A-RNA, DOUBLE HELIX, MISMATCHED, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 255D _struct_ref.pdbx_db_accession 255D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 255D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 255D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 17.5174404076 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 29.8734082283 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 12 N3 ? ? A G 1 A C 12 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 12 O2 ? ? A G 1 A C 12 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 12 N4 ? ? A G 1 A C 12 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 11 N3 ? ? A G 2 A C 11 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 11 O2 ? ? A G 2 A C 11 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 11 N4 ? ? A G 2 A C 11 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 10 N3 ? ? A A 3 A U 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 10 O4 ? ? A A 3 A U 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 9 N1 ? ? A C 4 A G 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 9 O6 ? ? A C 4 A G 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 9 N2 ? ? A C 4 A G 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 8 O6 ? ? A U 5 A G 8 2_656 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 8 N1 ? ? A U 5 A G 8 2_656 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A U 6 O4 ? ? ? 1_555 A C 7 N4 ? ? A U 6 A C 7 2_656 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog15 hydrog ? ? A C 7 N4 ? ? ? 1_555 A U 6 O4 ? ? A C 7 A U 6 2_656 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog16 hydrog ? ? A G 8 N1 ? ? ? 1_555 A U 5 O2 ? ? A G 8 A U 5 2_656 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A G 8 O6 ? ? ? 1_555 A U 5 N3 ? ? A G 8 A U 5 2_656 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 4 N3 ? ? A G 9 A C 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 4 O2 ? ? A G 9 A C 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 4 N4 ? ? A G 9 A C 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 3 N1 ? ? A U 10 A A 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 3 N6 ? ? A U 10 A A 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 2 N1 ? ? A C 11 A G 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 2 O6 ? ? A C 11 A G 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 2 N2 ? ? A C 11 A G 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 1 N1 ? ? A C 12 A G 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 1 O6 ? ? A C 12 A G 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 1 N2 ? ? A C 12 A G 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N7 A G 1 ? ? O A HOH 18 ? ? 2.00 2 1 O A HOH 28 ? ? O A HOH 37 ? ? 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A G 1 ? ? P A G 2 ? ? 1.706 1.607 0.099 0.012 Y 2 1 P A A 3 ? ? "O5'" A A 3 ? ? 1.673 1.593 0.080 0.010 N 3 1 N3 A A 3 ? ? C4 A A 3 ? ? 1.300 1.344 -0.044 0.006 N 4 1 P A C 4 ? ? "O5'" A C 4 ? ? 1.501 1.593 -0.092 0.010 N 5 1 N3 A U 10 ? ? C4 A U 10 ? ? 1.324 1.380 -0.056 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A G 1 ? ? P A G 1 ? ? OP2 A G 1 ? ? 123.90 110.70 13.20 1.20 N 2 1 "O5'" A G 1 ? ? "C5'" A G 1 ? ? "C4'" A G 1 ? ? 102.45 109.40 -6.95 0.80 N 3 1 "O3'" A G 1 ? ? P A G 2 ? ? OP1 A G 2 ? ? 87.05 105.20 -18.15 2.20 Y 4 1 "O5'" A G 2 ? ? P A G 2 ? ? OP2 A G 2 ? ? 125.06 110.70 14.36 1.20 N 5 1 C5 A G 2 ? ? C6 A G 2 ? ? N1 A G 2 ? ? 115.38 111.50 3.88 0.50 N 6 1 "O3'" A G 2 ? ? P A A 3 ? ? OP2 A A 3 ? ? 122.84 110.50 12.34 1.10 Y 7 1 "O3'" A G 2 ? ? P A A 3 ? ? OP1 A A 3 ? ? 90.94 105.20 -14.26 2.20 Y 8 1 "O5'" A A 3 ? ? P A A 3 ? ? OP1 A A 3 ? ? 96.98 105.70 -8.72 0.90 N 9 1 "O5'" A A 3 ? ? "C5'" A A 3 ? ? "C4'" A A 3 ? ? 101.23 109.40 -8.17 0.80 N 10 1 C6 A A 3 ? ? N1 A A 3 ? ? C2 A A 3 ? ? 122.50 118.60 3.90 0.60 N 11 1 N1 A A 3 ? ? C2 A A 3 ? ? N3 A A 3 ? ? 122.74 129.30 -6.56 0.50 N 12 1 C2 A A 3 ? ? N3 A A 3 ? ? C4 A A 3 ? ? 115.88 110.60 5.28 0.50 N 13 1 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 114.23 117.70 -3.47 0.50 N 14 1 C5 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 128.69 123.70 4.99 0.80 N 15 1 "O3'" A A 3 ? ? P A C 4 ? ? OP2 A C 4 ? ? 119.70 110.50 9.20 1.10 Y 16 1 N1 A C 4 ? ? C2 A C 4 ? ? O2 A C 4 ? ? 123.13 118.90 4.23 0.60 N 17 1 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 113.68 118.00 -4.32 0.70 N 18 1 "O3'" A C 4 ? ? P A U 5 ? ? OP2 A U 5 ? ? 119.72 110.50 9.22 1.10 Y 19 1 N1 A U 5 ? ? C2 A U 5 ? ? N3 A U 5 ? ? 118.57 114.90 3.67 0.60 N 20 1 C2 A U 5 ? ? N3 A U 5 ? ? C4 A U 5 ? ? 121.13 127.00 -5.87 0.60 N 21 1 N3 A U 5 ? ? C4 A U 5 ? ? C5 A U 5 ? ? 118.40 114.60 3.80 0.60 N 22 1 N3 A U 5 ? ? C4 A U 5 ? ? O4 A U 5 ? ? 114.18 119.40 -5.22 0.70 N 23 1 "O3'" A U 5 ? ? P A U 6 ? ? OP2 A U 6 ? ? 119.08 110.50 8.58 1.10 Y 24 1 "O5'" A U 6 ? ? P A U 6 ? ? OP1 A U 6 ? ? 99.96 105.70 -5.74 0.90 N 25 1 P A U 6 ? ? "O5'" A U 6 ? ? "C5'" A U 6 ? ? 131.90 120.90 11.00 1.60 N 26 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 112.94 108.50 4.44 0.70 N 27 1 N1 A U 6 ? ? C2 A U 6 ? ? N3 A U 6 ? ? 119.48 114.90 4.58 0.60 N 28 1 C2 A U 6 ? ? N3 A U 6 ? ? C4 A U 6 ? ? 119.71 127.00 -7.29 0.60 N 29 1 N3 A U 6 ? ? C4 A U 6 ? ? C5 A U 6 ? ? 119.78 114.60 5.18 0.60 N 30 1 C5 A U 6 ? ? C6 A U 6 ? ? N1 A U 6 ? ? 119.11 122.70 -3.59 0.50 N 31 1 N1 A U 6 ? ? C2 A U 6 ? ? O2 A U 6 ? ? 117.11 122.80 -5.69 0.70 N 32 1 "O3'" A U 6 ? ? P A C 7 ? ? OP2 A C 7 ? ? 118.77 110.50 8.27 1.10 Y 33 1 C6 A C 7 ? ? N1 A C 7 ? ? C2 A C 7 ? ? 123.73 120.30 3.43 0.40 N 34 1 C2 A C 7 ? ? N3 A C 7 ? ? C4 A C 7 ? ? 123.29 119.90 3.39 0.50 N 35 1 N3 A C 7 ? ? C4 A C 7 ? ? N4 A C 7 ? ? 111.86 118.00 -6.14 0.70 N 36 1 C5 A C 7 ? ? C4 A C 7 ? ? N4 A C 7 ? ? 127.71 120.20 7.51 0.70 N 37 1 "C3'" A C 7 ? ? "O3'" A C 7 ? ? P A G 8 ? ? 112.30 119.70 -7.40 1.20 Y 38 1 "O5'" A G 8 ? ? P A G 8 ? ? OP2 A G 8 ? ? 119.79 110.70 9.09 1.20 N 39 1 "O5'" A G 8 ? ? "C5'" A G 8 ? ? "C4'" A G 8 ? ? 102.41 109.40 -6.99 0.80 N 40 1 "C5'" A G 8 ? ? "C4'" A G 8 ? ? "C3'" A G 8 ? ? 105.56 115.20 -9.64 1.40 N 41 1 C6 A G 9 ? ? N1 A G 9 ? ? C2 A G 9 ? ? 121.31 125.10 -3.79 0.60 N 42 1 C2 A G 9 ? ? N3 A G 9 ? ? C4 A G 9 ? ? 116.37 111.90 4.47 0.50 N 43 1 N3 A G 9 ? ? C4 A G 9 ? ? C5 A G 9 ? ? 124.89 128.60 -3.71 0.50 N 44 1 C5 A G 9 ? ? C6 A G 9 ? ? N1 A G 9 ? ? 115.78 111.50 4.28 0.50 N 45 1 C4 A G 9 ? ? C5 A G 9 ? ? N7 A G 9 ? ? 108.18 110.80 -2.62 0.40 N 46 1 N1 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 114.64 119.90 -5.26 0.60 N 47 1 OP1 A U 10 ? ? P A U 10 ? ? OP2 A U 10 ? ? 128.64 119.60 9.04 1.50 N 48 1 N1 A U 10 ? ? C2 A U 10 ? ? N3 A U 10 ? ? 119.12 114.90 4.22 0.60 N 49 1 C2 A U 10 ? ? N3 A U 10 ? ? C4 A U 10 ? ? 118.84 127.00 -8.16 0.60 N 50 1 N3 A U 10 ? ? C4 A U 10 ? ? C5 A U 10 ? ? 121.92 114.60 7.32 0.60 N 51 1 N3 A U 10 ? ? C2 A U 10 ? ? O2 A U 10 ? ? 117.67 122.20 -4.53 0.70 N 52 1 N3 A U 10 ? ? C4 A U 10 ? ? O4 A U 10 ? ? 110.82 119.40 -8.58 0.70 N 53 1 "O3'" A C 11 ? ? P A C 12 ? ? OP1 A C 12 ? ? 87.90 105.20 -17.30 2.20 Y 54 1 N3 A C 12 ? ? C4 A C 12 ? ? N4 A C 12 ? ? 109.44 118.00 -8.56 0.70 N 55 1 C5 A C 12 ? ? C4 A C 12 ? ? N4 A C 12 ? ? 127.57 120.20 7.37 0.70 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 39 ? B HOH . 2 1 A HOH 58 ? B HOH . # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 U OP3 O N N 114 U P P N N 115 U OP1 O N N 116 U OP2 O N N 117 U "O5'" O N N 118 U "C5'" C N N 119 U "C4'" C N R 120 U "O4'" O N N 121 U "C3'" C N S 122 U "O3'" O N N 123 U "C2'" C N R 124 U "O2'" O N N 125 U "C1'" C N R 126 U N1 N N N 127 U C2 C N N 128 U O2 O N N 129 U N3 N N N 130 U C4 C N N 131 U O4 O N N 132 U C5 C N N 133 U C6 C N N 134 U HOP3 H N N 135 U HOP2 H N N 136 U "H5'" H N N 137 U "H5''" H N N 138 U "H4'" H N N 139 U "H3'" H N N 140 U "HO3'" H N N 141 U "H2'" H N N 142 U "HO2'" H N N 143 U "H1'" H N N 144 U H3 H N N 145 U H5 H N N 146 U H6 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 255D 'double helix' 255D 'a-form double helix' 255D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 12 2_656 -0.298 -0.120 -0.153 0.040 0.663 1.779 1 A_G1:C12_A A 1 ? A 12 ? 19 1 1 A G 2 1_555 A C 11 2_656 -0.207 -0.258 -0.149 -1.755 -12.543 2.507 2 A_G2:C11_A A 2 ? A 11 ? 19 1 1 A A 3 1_555 A U 10 2_656 -0.150 -0.095 -0.148 -5.907 -5.106 3.685 3 A_A3:U10_A A 3 ? A 10 ? 20 1 1 A C 4 1_555 A G 9 2_656 0.118 -0.064 -0.090 3.547 -6.622 0.987 4 A_C4:G9_A A 4 ? A 9 ? 19 1 1 A U 5 1_555 A G 8 2_656 2.360 -0.590 0.072 -7.871 -12.854 0.904 5 A_U5:G8_A A 5 ? A 8 ? 28 ? 1 A U 6 1_555 A C 7 2_656 -0.547 0.041 0.149 -9.508 8.336 -37.641 6 A_U6:C7_A A 6 ? A 7 ? ? ? 1 A C 7 1_555 A U 6 2_656 0.547 0.041 0.149 9.508 8.336 -37.641 7 A_C7:U6_A A 7 ? A 6 ? ? ? 1 A G 8 1_555 A U 5 2_656 -2.360 -0.590 0.072 7.871 -12.854 0.904 8 A_G8:U5_A A 8 ? A 5 ? 28 ? 1 A G 9 1_555 A C 4 2_656 -0.118 -0.064 -0.090 -3.547 -6.622 0.987 9 A_G9:C4_A A 9 ? A 4 ? 19 1 1 A U 10 1_555 A A 3 2_656 0.150 -0.095 -0.148 5.907 -5.106 3.685 10 A_U10:A3_A A 10 ? A 3 ? 20 1 1 A C 11 1_555 A G 2 2_656 0.207 -0.258 -0.149 1.755 -12.543 2.507 11 A_C11:G2_A A 11 ? A 2 ? 19 1 1 A C 12 1_555 A G 1 2_656 0.298 -0.120 -0.153 -0.040 0.663 1.779 12 A_C12:G1_A A 12 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 12 2_656 A G 2 1_555 A C 11 2_656 -0.697 -2.001 3.366 -2.305 9.034 32.553 -4.834 0.841 2.769 15.718 4.011 33.827 1 AA_G1G2:C11C12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 A G 2 1_555 A C 11 2_656 A A 3 1_555 A U 10 2_656 -0.152 -1.618 3.416 -1.527 6.966 31.795 -4.093 0.006 3.007 12.519 2.744 32.565 2 AA_G2A3:U10C11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 A A 3 1_555 A U 10 2_656 A C 4 1_555 A G 9 2_656 0.791 -2.331 3.083 2.489 4.080 24.118 -6.601 -1.172 2.724 9.644 -5.883 24.580 3 AA_A3C4:G9U10_AA A 3 ? A 10 ? A 4 ? A 9 ? 1 A C 4 1_555 A G 9 2_656 A U 5 1_555 A G 8 2_656 0.500 -1.917 3.549 2.771 5.895 45.487 -2.994 -0.388 3.313 7.578 -3.562 45.926 4 AA_C4U5:G8G9_AA A 4 ? A 9 ? A 5 ? A 8 ? 1 A U 5 1_555 A G 8 2_656 A U 6 1_555 A C 7 2_656 -3.290 -2.243 3.405 2.511 8.823 18.937 -9.237 9.896 1.748 25.004 -7.117 21.024 5 AA_U5U6:C7G8_AA A 5 ? A 8 ? A 6 ? A 7 ? 1 A U 6 1_555 A C 7 2_656 A C 7 1_555 A U 6 2_656 0.000 -1.675 3.205 0.000 6.093 33.479 -3.773 0.000 2.865 10.469 0.000 34.013 6 AA_U6C7:U6C7_AA A 6 ? A 7 ? A 7 ? A 6 ? 1 A C 7 1_555 A U 6 2_656 A G 8 1_555 A U 5 2_656 3.290 -2.243 3.405 -2.511 8.823 18.937 -9.237 -9.896 1.748 25.004 7.117 21.024 7 AA_C7G8:U5U6_AA A 7 ? A 6 ? A 8 ? A 5 ? 1 A G 8 1_555 A U 5 2_656 A G 9 1_555 A C 4 2_656 -0.500 -1.917 3.549 -2.771 5.895 45.487 -2.994 0.388 3.313 7.578 3.562 45.926 8 AA_G8G9:C4U5_AA A 8 ? A 5 ? A 9 ? A 4 ? 1 A G 9 1_555 A C 4 2_656 A U 10 1_555 A A 3 2_656 -0.791 -2.331 3.083 -2.489 4.080 24.118 -6.601 1.172 2.724 9.644 5.883 24.580 9 AA_G9U10:A3C4_AA A 9 ? A 4 ? A 10 ? A 3 ? 1 A U 10 1_555 A A 3 2_656 A C 11 1_555 A G 2 2_656 0.152 -1.618 3.416 1.527 6.966 31.795 -4.093 -0.006 3.007 12.519 -2.744 32.565 10 AA_U10C11:G2A3_AA A 10 ? A 3 ? A 11 ? A 2 ? 1 A C 11 1_555 A G 2 2_656 A C 12 1_555 A G 1 2_656 0.697 -2.001 3.366 2.305 9.034 32.553 -4.834 -0.841 2.769 15.718 -4.011 33.827 11 AA_C11C12:G1G2_AA A 11 ? A 2 ? A 12 ? A 1 ? # _atom_sites.entry_id 255D _atom_sites.fract_transf_matrix[1][1] 0.026123 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.018156 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030979 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033475 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_