data_267D # _entry.id 267D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 267D pdb_0000267d 10.2210/pdb267d/pdb RCSB GDLB41 ? ? WWPDB D_1000177679 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-08-28 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-02-29 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Other 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_conn_type 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.value' 10 5 'Structure model' '_struct_conn.conn_type_id' 11 5 'Structure model' '_struct_conn.id' 12 5 'Structure model' '_struct_conn.pdbx_dist_value' 13 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 22 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 5 'Structure model' '_struct_conn_type.id' 29 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 267D _pdbx_database_status.recvd_initial_deposition_date 1996-07-12 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 265D unspecified . PDB 266D unspecified . PDB 268D unspecified . PDB 269D unspecified . PDB 270D unspecified . PDB 271D unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Partridge, B.L.' 1 'Salisbury, S.A.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI 1 'Structural Studies on Nucleic Acids' 'Thesis, University of Cambridge' ? ? ? 1996 ? UK ? 2108 ? ? ? primary ? 'To be Published' ? ? ? 1996 ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Partridge, B.L.' 1 ? primary 'Salisbury, S.A.' 2 ? 1 'Partridge, B.L.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5CM)P*GP*CP*G)-3') ; 3677.419 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'DISTAMYCIN A' 481.508 1 ? ? ? ? 4 water nat water 18.015 74 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(5CM)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'DISTAMYCIN A' DMY 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 5CM n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DMY non-polymer . 'DISTAMYCIN A' 'DISTAMYCIN; STALLIMYCIN' 'C22 H27 N9 O4' 481.508 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 5CM 9 9 9 5CM +C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 5CM 9 21 21 5CM +C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 26 26 MG MO6 A . D 3 DMY 1 25 25 DMY DMY B . E 4 HOH 1 30 30 HOH HOH A . E 4 HOH 2 32 32 HOH HOH A . E 4 HOH 3 33 33 HOH HOH A . E 4 HOH 4 34 34 HOH HOH A . E 4 HOH 5 37 37 HOH HOH A . E 4 HOH 6 38 38 HOH HOH A . E 4 HOH 7 40 40 HOH HOH A . E 4 HOH 8 41 41 HOH HOH A . E 4 HOH 9 42 42 HOH HOH A . E 4 HOH 10 43 43 HOH HOH A . E 4 HOH 11 46 46 HOH HOH A . E 4 HOH 12 48 48 HOH HOH A . E 4 HOH 13 49 49 HOH HOH A . E 4 HOH 14 54 54 HOH HOH A . E 4 HOH 15 57 57 HOH HOH A . E 4 HOH 16 58 58 HOH HOH A . E 4 HOH 17 60 60 HOH HOH A . E 4 HOH 18 61 61 HOH HOH A . E 4 HOH 19 65 65 HOH HOH A . E 4 HOH 20 68 68 HOH HOH A . E 4 HOH 21 69 69 HOH HOH A . E 4 HOH 22 70 70 HOH HOH A . E 4 HOH 23 73 73 HOH HOH A . E 4 HOH 24 77 77 HOH HOH A . E 4 HOH 25 81 81 HOH HOH A . E 4 HOH 26 82 82 HOH HOH A . E 4 HOH 27 84 84 HOH HOH A . E 4 HOH 28 86 86 HOH HOH A . E 4 HOH 29 87 87 HOH HOH A . E 4 HOH 30 90 90 HOH HOH A . E 4 HOH 31 92 92 HOH HOH A . E 4 HOH 32 94 94 HOH HOH A . E 4 HOH 33 95 26 HOH MO6 A . E 4 HOH 34 96 26 HOH MO6 A . E 4 HOH 35 98 26 HOH MO6 A . E 4 HOH 36 99 26 HOH MO6 A . E 4 HOH 37 100 26 HOH MO6 A . F 4 HOH 1 27 27 HOH HOH B . F 4 HOH 2 28 28 HOH HOH B . F 4 HOH 3 29 29 HOH HOH B . F 4 HOH 4 31 31 HOH HOH B . F 4 HOH 5 35 35 HOH HOH B . F 4 HOH 6 36 36 HOH HOH B . F 4 HOH 7 39 39 HOH HOH B . F 4 HOH 8 44 44 HOH HOH B . F 4 HOH 9 45 45 HOH HOH B . F 4 HOH 10 47 47 HOH HOH B . F 4 HOH 11 50 50 HOH HOH B . F 4 HOH 12 51 51 HOH HOH B . F 4 HOH 13 52 52 HOH HOH B . F 4 HOH 14 53 53 HOH HOH B . F 4 HOH 15 55 55 HOH HOH B . F 4 HOH 16 56 56 HOH HOH B . F 4 HOH 17 59 59 HOH HOH B . F 4 HOH 18 62 62 HOH HOH B . F 4 HOH 19 63 63 HOH HOH B . F 4 HOH 20 64 64 HOH HOH B . F 4 HOH 21 66 66 HOH HOH B . F 4 HOH 22 67 67 HOH HOH B . F 4 HOH 23 71 71 HOH HOH B . F 4 HOH 24 72 72 HOH HOH B . F 4 HOH 25 74 74 HOH HOH B . F 4 HOH 26 75 75 HOH HOH B . F 4 HOH 27 76 76 HOH HOH B . F 4 HOH 28 78 78 HOH HOH B . F 4 HOH 29 79 79 HOH HOH B . F 4 HOH 30 80 80 HOH HOH B . F 4 HOH 31 83 83 HOH HOH B . F 4 HOH 32 85 85 HOH HOH B . F 4 HOH 33 88 88 HOH HOH B . F 4 HOH 34 89 89 HOH HOH B . F 4 HOH 35 91 91 HOH HOH B . F 4 HOH 36 93 93 HOH HOH B . F 4 HOH 37 97 26 HOH MO6 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal NUCLSQ refinement . ? 1 RIGAKU 'data reduction' . ? 2 RIGAKU 'data scaling' . ? 3 # _cell.entry_id 267D _cell.length_a 24.918 _cell.length_b 40.141 _cell.length_c 66.306 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 267D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 267D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.44 _exptl_crystal.density_Matthews 2.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.10 _exptl_crystal_grow.pdbx_details 'pH 7.10' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'NA CACODYLATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1995-05-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 267D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.300 _reflns.d_resolution_high 2.000 _reflns.number_obs 10301 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.0742 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 267D _refine.ls_number_reflns_obs 3703 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 76.400 _refine.ls_R_factor_obs 0.156 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;STANDARD R-FACTOR = 15.6% ERROR R-FACTOR = 5.5% WEIGHTED R-FACTOR = 13.7% NUMBER OF REFLECTIONS INCLUDED = 10301 AVERAGE |FO-FC| DISCREPANCY = 20.38 AVERAGE WEIGHTED |FO-FC| DISCREPANCY = 0.10 CORRELATION COEFFICIENT = 99.2% RESOLUTION BREAKDOWN "ALL" R FACTOR = 14.7% ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 488 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 598 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it 12.632 7.500 ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it 13.759 7.500 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it 13.759 7.500 ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it 13.877 7.500 ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.029 0.015 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.034 0.015 ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr 0.054 0.040 ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd 0.222 0.063 ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd 0.220 0.063 ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 267D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 267D _struct.title 'STRUCTURAL STUDIES ON NUCLEIC ACIDS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 267D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, MODIFIED, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 267D _struct_ref.pdbx_db_accession 267D _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 267D A 1 ? 12 ? 267D 1 ? 12 ? 1 12 2 1 267D B 1 ? 12 ? 267D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 8 "O3'" ? ? ? 1_555 A 5CM 9 P ? ? A DT 8 A 5CM 9 1_555 ? ? ? ? ? ? ? 1.631 ? ? covale2 covale both ? A 5CM 9 "O3'" ? ? ? 1_555 A DG 10 P ? ? A 5CM 9 A DG 10 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale3 covale both ? B DT 8 "O3'" ? ? ? 1_555 B 5CM 9 P ? ? B DT 20 B 5CM 21 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale4 covale both ? B 5CM 9 "O3'" ? ? ? 1_555 B DG 10 P ? ? B 5CM 21 B DG 22 1_555 ? ? ? ? ? ? ? 1.571 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 95 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 96 1_555 ? ? ? ? ? ? ? 1.926 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 98 1_555 ? ? ? ? ? ? ? 1.882 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 99 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 100 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 97 1_555 ? ? ? ? ? ? ? 2.096 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B 5CM 9 N3 ? ? A DG 4 B 5CM 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B 5CM 9 O2 ? ? A DG 4 B 5CM 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B 5CM 9 N4 ? ? A DG 4 B 5CM 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A 5CM 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A 5CM 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A 5CM 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A 5CM 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A 5CM 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A 5CM 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 95 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 96 ? 1_555 177.0 ? 2 O ? E HOH . ? A HOH 95 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 98 ? 1_555 89.5 ? 3 O ? E HOH . ? A HOH 96 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 98 ? 1_555 90.7 ? 4 O ? E HOH . ? A HOH 95 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 99 ? 1_555 85.9 ? 5 O ? E HOH . ? A HOH 96 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 99 ? 1_555 97.0 ? 6 O ? E HOH . ? A HOH 98 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 99 ? 1_555 98.2 ? 7 O ? E HOH . ? A HOH 95 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 100 ? 1_555 89.8 ? 8 O ? E HOH . ? A HOH 96 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 100 ? 1_555 87.2 ? 9 O ? E HOH . ? A HOH 98 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 100 ? 1_555 88.5 ? 10 O ? E HOH . ? A HOH 99 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 100 ? 1_555 171.9 ? 11 O ? E HOH . ? A HOH 95 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 97 ? 1_555 85.0 ? 12 O ? E HOH . ? A HOH 96 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 97 ? 1_555 94.6 ? 13 O ? E HOH . ? A HOH 98 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 97 ? 1_555 173.8 ? 14 O ? E HOH . ? A HOH 99 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 97 ? 1_555 84.3 ? 15 O ? E HOH . ? A HOH 100 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 97 ? 1_555 88.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B DMY 25 ? 12 'BINDING SITE FOR RESIDUE DMY B 25' AC2 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 12 DA A 5 ? DA A 5 . ? 1_555 ? 3 AC1 12 DA A 6 ? DA A 6 . ? 1_555 ? 4 AC1 12 DT A 7 ? DT A 7 . ? 1_555 ? 5 AC1 12 DT A 8 ? DT A 8 . ? 1_555 ? 6 AC1 12 5CM A 9 ? 5CM A 9 . ? 1_555 ? 7 AC1 12 DA B 5 ? DA B 17 . ? 1_555 ? 8 AC1 12 DA B 6 ? DA B 18 . ? 1_555 ? 9 AC1 12 DT B 7 ? DT B 19 . ? 1_555 ? 10 AC1 12 DT B 8 ? DT B 20 . ? 1_555 ? 11 AC1 12 5CM B 9 ? 5CM B 21 . ? 1_555 ? 12 AC1 12 HOH F . ? HOH B 36 . ? 1_555 ? 13 AC2 6 HOH E . ? HOH A 95 . ? 1_555 ? 14 AC2 6 HOH E . ? HOH A 96 . ? 1_555 ? 15 AC2 6 HOH E . ? HOH A 98 . ? 1_555 ? 16 AC2 6 HOH E . ? HOH A 99 . ? 1_555 ? 17 AC2 6 HOH E . ? HOH A 100 . ? 1_555 ? 18 AC2 6 HOH F . ? HOH B 97 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N7 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 4 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 43 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.416 1.518 -0.102 0.010 N 2 1 "O3'" A DC 3 ? ? P A DG 4 ? ? 1.529 1.607 -0.078 0.012 Y 3 1 "O3'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.363 1.419 -0.056 0.006 N 4 1 C5 A DG 4 ? ? N7 A DG 4 ? ? 1.434 1.388 0.046 0.006 N 5 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.352 1.305 0.047 0.006 N 6 1 "C2'" A DA 5 ? ? "C1'" A DA 5 ? ? 1.590 1.519 0.071 0.010 N 7 1 C8 A DA 6 ? ? N9 A DA 6 ? ? 1.310 1.373 -0.063 0.008 N 8 1 N9 A DA 6 ? ? C4 A DA 6 ? ? 1.417 1.374 0.043 0.006 N 9 1 "C2'" A DT 7 ? ? "C1'" A DT 7 ? ? 1.438 1.518 -0.080 0.010 N 10 1 C5 A DT 7 ? ? C6 A DT 7 ? ? 1.388 1.339 0.049 0.007 N 11 1 "C2'" A DT 8 ? ? "C1'" A DT 8 ? ? 1.434 1.518 -0.084 0.010 N 12 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? 1.523 1.420 0.103 0.011 N 13 1 N3 A DC 11 ? ? C4 A DC 11 ? ? 1.379 1.335 0.044 0.007 N 14 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? 1.495 1.420 0.075 0.011 N 15 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? 1.375 1.446 -0.071 0.010 N 16 1 C8 B DG 14 ? ? N9 B DG 14 ? ? 1.325 1.374 -0.049 0.007 N 17 1 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.562 1.512 0.050 0.007 N 18 1 "C2'" B DC 15 ? ? "C1'" B DC 15 ? ? 1.457 1.518 -0.061 0.010 N 19 1 N7 B DG 16 ? ? C8 B DG 16 ? ? 1.348 1.305 0.043 0.006 N 20 1 C8 B DG 16 ? ? N9 B DG 16 ? ? 1.306 1.374 -0.068 0.007 N 21 1 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? 1.434 1.509 -0.075 0.011 N 22 1 "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 1.582 1.519 0.063 0.010 N 23 1 "O3'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.368 1.419 -0.051 0.006 N 24 1 N3 B DA 17 ? ? C4 B DA 17 ? ? 1.307 1.344 -0.037 0.006 N 25 1 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.350 1.305 0.045 0.006 N 26 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? 1.493 1.420 0.073 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 100.19 109.40 -9.21 0.80 N 2 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 94.02 102.40 -8.38 0.80 N 3 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.76 108.30 5.46 0.30 N 4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 124.94 118.00 6.94 0.70 N 5 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 115.18 120.20 -5.02 0.70 N 6 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 109.08 119.60 -10.52 1.50 N 7 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 118.24 110.70 7.54 1.20 N 8 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 91.12 109.40 -18.28 0.80 N 9 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 107.83 105.40 2.43 0.40 N 10 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 124.99 116.20 8.79 0.90 N 11 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 110.13 119.90 -9.77 0.70 N 12 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 125.68 119.90 5.78 0.60 N 13 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 121.25 128.60 -7.35 0.60 N 14 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 129.08 119.70 9.38 1.20 Y 15 1 P A DC 3 ? ? "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? 138.26 120.90 17.36 1.60 N 16 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 98.01 104.50 -6.49 0.40 N 17 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 132.00 119.70 12.30 1.20 Y 18 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 97.14 109.40 -12.26 0.80 N 19 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.17 104.50 -3.33 0.40 N 20 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 96.64 102.40 -5.76 0.80 N 21 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 114.53 108.30 6.23 0.30 N 22 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 107.43 116.20 -8.77 0.90 N 23 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 126.25 119.90 6.35 0.70 N 24 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 115.62 119.90 -4.28 0.60 N 25 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DA 5 ? ? 146.45 119.70 26.75 1.20 Y 26 1 "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? 104.01 109.40 -5.39 0.80 N 27 1 N9 A DA 5 ? ? "C1'" A DA 5 ? ? "C2'" A DA 5 ? ? 100.31 112.60 -12.29 1.90 N 28 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 125.21 108.30 16.91 0.30 N 29 1 C6 A DA 5 ? ? N1 A DA 5 ? ? C2 A DA 5 ? ? 122.92 118.60 4.32 0.60 N 30 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 125.54 129.30 -3.76 0.50 N 31 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DA 6 ? ? 153.33 119.70 33.63 1.20 Y 32 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 138.58 119.60 18.98 1.50 N 33 1 "O5'" A DA 6 ? ? P A DA 6 ? ? OP1 A DA 6 ? ? 90.42 105.70 -15.28 0.90 N 34 1 "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 103.26 109.40 -6.14 0.80 N 35 1 "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? "C1'" A DA 6 ? ? 96.67 102.40 -5.73 0.80 N 36 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.45 108.30 4.15 0.30 N 37 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 123.46 118.60 4.86 0.60 N 38 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 124.82 129.30 -4.48 0.50 N 39 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 122.38 118.60 3.78 0.60 N 40 1 "O5'" A DT 7 ? ? P A DT 7 ? ? OP2 A DT 7 ? ? 118.33 110.70 7.63 1.20 N 41 1 "C1'" A DT 7 ? ? "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 102.29 110.10 -7.81 1.00 N 42 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 111.41 106.80 4.61 0.50 N 43 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 102.63 108.00 -5.37 0.70 N 44 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 122.52 127.20 -4.68 0.60 N 45 1 C5 A DT 7 ? ? C6 A DT 7 ? ? N1 A DT 7 ? ? 118.45 123.70 -5.25 0.60 N 46 1 N1 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 116.96 123.10 -6.14 0.80 N 47 1 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 126.62 122.30 4.32 0.60 N 48 1 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 122.81 119.00 3.81 0.60 N 49 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.36 122.90 -5.54 0.60 N 50 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 138.02 119.70 18.32 1.20 Y 51 1 OP1 A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 110.47 119.60 -9.13 1.50 N 52 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 101.67 104.50 -2.83 0.40 N 53 1 "C1'" A DT 8 ? ? "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 99.75 110.10 -10.35 1.00 N 54 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 92.61 105.90 -13.29 0.80 N 55 1 N1 A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 122.97 114.30 8.67 1.40 N 56 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 102.60 108.00 -5.40 0.70 N 57 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 119.02 114.60 4.42 0.60 N 58 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 121.31 127.20 -5.89 0.60 N 59 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 118.86 115.20 3.66 0.60 N 60 1 C5 A DT 8 ? ? C6 A DT 8 ? ? N1 A DT 8 ? ? 119.62 123.70 -4.08 0.60 N 61 1 N1 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 117.25 123.10 -5.85 0.80 N 62 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 126.58 119.00 7.58 0.60 N 63 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 112.54 122.90 -10.36 0.60 N 64 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 101.43 119.60 -18.17 1.50 N 65 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 100.63 104.50 -3.87 0.40 N 66 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 97.49 102.40 -4.91 0.80 N 67 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 124.53 108.30 16.23 0.30 N 68 1 C2 A DG 10 ? ? N3 A DG 10 ? ? C4 A DG 10 ? ? 115.35 111.90 3.45 0.50 N 69 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? ? 128.55 119.70 8.85 1.20 Y 70 1 OP1 A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 107.00 119.60 -12.60 1.50 N 71 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 121.37 110.70 10.67 1.20 N 72 1 P A DC 11 ? ? "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? 141.32 120.90 20.42 1.60 N 73 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 114.11 108.30 5.81 0.30 N 74 1 N3 A DC 11 ? ? C4 A DC 11 ? ? C5 A DC 11 ? ? 119.02 121.90 -2.88 0.40 N 75 1 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 114.24 118.90 -4.66 0.60 N 76 1 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 126.22 121.90 4.32 0.70 N 77 1 N3 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 126.79 118.00 8.79 0.70 N 78 1 C5 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 114.19 120.20 -6.01 0.70 N 79 1 "C3'" A DC 11 ? ? "O3'" A DC 11 ? ? P A DG 12 ? ? 137.38 119.70 17.68 1.20 Y 80 1 OP1 A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 105.91 119.60 -13.69 1.50 N 81 1 "O5'" A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 119.65 110.70 8.95 1.20 N 82 1 P A DG 12 ? ? "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? 140.65 120.90 19.75 1.60 N 83 1 "O4'" A DG 12 ? ? "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? 101.25 104.50 -3.25 0.40 N 84 1 "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? "C2'" A DG 12 ? ? 112.21 103.10 9.11 0.90 N 85 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.75 108.30 3.45 0.30 N 86 1 "O4'" B DC 13 ? ? "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? 94.63 104.50 -9.87 0.40 N 87 1 "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? "O4'" B DC 13 ? ? 119.88 109.80 10.08 1.10 N 88 1 "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? 94.37 102.20 -7.83 0.70 N 89 1 "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? "C1'" B DC 13 ? ? 96.79 102.40 -5.61 0.80 N 90 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 113.08 108.30 4.78 0.30 N 91 1 C2 B DC 13 ? ? N3 B DC 13 ? ? C4 B DC 13 ? ? 125.47 119.90 5.57 0.50 N 92 1 N3 B DC 13 ? ? C4 B DC 13 ? ? C5 B DC 13 ? ? 117.88 121.90 -4.02 0.40 N 93 1 N3 B DC 13 ? ? C4 B DC 13 ? ? N4 B DC 13 ? ? 122.67 118.00 4.67 0.70 N 94 1 "O3'" B DC 13 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 119.49 110.50 8.99 1.10 Y 95 1 OP1 B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 108.64 119.60 -10.96 1.50 N 96 1 "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? 99.26 109.40 -10.14 0.80 N 97 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 110.60 106.00 4.60 0.60 N 98 1 C6 B DG 14 ? ? N1 B DG 14 ? ? C2 B DG 14 ? ? 118.58 125.10 -6.52 0.60 N 99 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N3 B DG 14 ? ? 127.93 123.90 4.03 0.60 N 100 1 N3 B DG 14 ? ? C4 B DG 14 ? ? C5 B DG 14 ? ? 125.46 128.60 -3.14 0.50 N 101 1 C5 B DG 14 ? ? C6 B DG 14 ? ? N1 B DG 14 ? ? 115.66 111.50 4.16 0.50 N 102 1 C4 B DG 14 ? ? C5 B DG 14 ? ? N7 B DG 14 ? ? 107.53 110.80 -3.27 0.40 N 103 1 N9 B DG 14 ? ? C4 B DG 14 ? ? C5 B DG 14 ? ? 107.86 105.40 2.46 0.40 N 104 1 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 110.95 119.90 -8.95 0.70 N 105 1 C5 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 124.73 128.60 -3.87 0.60 N 106 1 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 140.39 119.70 20.69 1.20 Y 107 1 "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 97.48 109.40 -11.92 0.80 N 108 1 P B DC 15 ? ? "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? 136.11 120.90 15.21 1.60 N 109 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 110.40 106.80 3.60 0.50 N 110 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 99.55 108.00 -8.45 0.70 N 111 1 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DG 16 ? ? 110.84 119.70 -8.86 1.20 Y 112 1 P B DG 16 ? ? "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? 110.51 120.90 -10.39 1.60 N 113 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 114.37 108.30 6.07 0.30 N 114 1 C6 B DG 16 ? ? N1 B DG 16 ? ? C2 B DG 16 ? ? 118.25 125.10 -6.85 0.60 N 115 1 N3 B DG 16 ? ? C4 B DG 16 ? ? C5 B DG 16 ? ? 125.48 128.60 -3.12 0.50 N 116 1 C5 B DG 16 ? ? C6 B DG 16 ? ? N1 B DG 16 ? ? 118.22 111.50 6.72 0.50 N 117 1 N1 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 113.27 119.90 -6.63 0.60 N 118 1 OP1 B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 109.84 119.60 -9.76 1.50 N 119 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 121.17 110.70 10.47 1.20 N 120 1 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? "O4'" B DA 17 ? ? 117.72 109.80 7.92 1.10 N 121 1 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 96.94 102.20 -5.26 0.70 N 122 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? "C2'" B DA 17 ? ? 99.06 105.90 -6.84 0.80 N 123 1 N9 B DA 17 ? ? "C1'" B DA 17 ? ? "C2'" B DA 17 ? ? 99.92 112.60 -12.68 1.90 N 124 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 127.01 108.30 18.71 0.30 N 125 1 N7 B DA 17 ? ? C8 B DA 17 ? ? N9 B DA 17 ? ? 110.57 113.80 -3.23 0.50 N 126 1 N9 B DA 17 ? ? C4 B DA 17 ? ? C5 B DA 17 ? ? 109.29 105.80 3.49 0.40 N 127 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 150.62 119.70 30.92 1.20 Y 128 1 "O5'" B DA 18 ? ? "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? 102.41 109.40 -6.99 0.80 N 129 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 98.44 108.00 -9.56 0.70 N 130 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 122.94 118.60 4.34 0.60 N 131 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 124.59 129.30 -4.71 0.50 N 132 1 P B DT 19 ? ? "O5'" B DT 19 ? ? "C5'" B DT 19 ? ? 133.50 120.90 12.60 1.60 N 133 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? "C2'" B DT 19 ? ? 95.27 105.90 -10.63 0.80 N 134 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 115.56 108.30 7.26 0.30 N 135 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 123.15 127.20 -4.05 0.60 N 136 1 N3 B DT 19 ? ? C4 B DT 19 ? ? C5 B DT 19 ? ? 119.46 115.20 4.26 0.60 N 137 1 N1 B DT 19 ? ? C2 B DT 19 ? ? O2 B DT 19 ? ? 118.07 123.10 -5.03 0.80 N 138 1 N3 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 123.82 119.90 3.92 0.60 N 139 1 C5 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 116.65 124.90 -8.25 0.70 N 140 1 "C3'" B DT 19 ? ? "O3'" B DT 19 ? ? P B DT 20 ? ? 133.75 119.70 14.05 1.20 Y 141 1 P B DT 20 ? ? "O5'" B DT 20 ? ? "C5'" B DT 20 ? ? 104.64 120.90 -16.26 1.60 N 142 1 "C1'" B DT 20 ? ? "O4'" B DT 20 ? ? "C4'" B DT 20 ? ? 102.27 110.10 -7.83 1.00 N 143 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 94.22 108.00 -13.78 0.70 N 144 1 N1 B DT 20 ? ? C2 B DT 20 ? ? N3 B DT 20 ? ? 119.07 114.60 4.47 0.60 N 145 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 122.08 127.20 -5.12 0.60 N 146 1 N3 B DT 20 ? ? C2 B DT 20 ? ? O2 B DT 20 ? ? 118.25 122.30 -4.05 0.60 N 147 1 N3 B DT 20 ? ? C4 B DT 20 ? ? O4 B DT 20 ? ? 113.07 119.90 -6.83 0.60 N 148 1 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.99 122.90 -3.91 0.60 N 149 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B 5CM 21 ? ? 111.20 119.70 -8.50 1.20 Y 150 1 "O3'" B DT 20 ? ? P B 5CM 21 ? ? OP1 B 5CM 21 ? ? 117.12 110.50 6.62 1.10 Y 151 1 "C3'" B 5CM 21 ? ? "O3'" B 5CM 21 ? ? P B DG 22 ? ? 132.55 119.70 12.85 1.20 Y 152 1 "O5'" B DG 22 ? ? "C5'" B DG 22 ? ? "C4'" B DG 22 ? ? 102.24 109.40 -7.16 0.80 N 153 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 95.45 102.40 -6.95 0.80 N 154 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 114.90 108.30 6.60 0.30 N 155 1 C6 B DG 22 ? ? N1 B DG 22 ? ? C2 B DG 22 ? ? 120.54 125.10 -4.56 0.60 N 156 1 C5 B DG 22 ? ? C6 B DG 22 ? ? N1 B DG 22 ? ? 114.82 111.50 3.32 0.50 N 157 1 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 124.44 128.60 -4.16 0.60 N 158 1 "C3'" B DG 22 ? ? "O3'" B DG 22 ? ? P B DC 23 ? ? 128.47 119.70 8.77 1.20 Y 159 1 "O3'" B DG 22 ? ? P B DC 23 ? ? "O5'" B DC 23 ? ? 115.76 104.00 11.76 1.90 Y 160 1 OP1 B DC 23 ? ? P B DC 23 ? ? OP2 B DC 23 ? ? 135.48 119.60 15.88 1.50 N 161 1 "O5'" B DC 23 ? ? "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.88 109.40 -5.52 0.80 N 162 1 P B DC 23 ? ? "O5'" B DC 23 ? ? "C5'" B DC 23 ? ? 104.07 120.90 -16.83 1.60 N 163 1 N3 B DC 23 ? ? C4 B DC 23 ? ? C5 B DC 23 ? ? 119.43 121.90 -2.47 0.40 N 164 1 N1 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 122.89 118.90 3.99 0.60 N 165 1 "C3'" B DC 23 ? ? "O3'" B DC 23 ? ? P B DG 24 ? ? 128.57 119.70 8.87 1.20 Y 166 1 OP1 B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 106.64 119.60 -12.96 1.50 N 167 1 "O4'" B DG 24 ? ? "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? 102.10 104.50 -2.40 0.40 N 168 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 100.42 108.00 -7.58 0.70 N 169 1 C6 B DG 24 ? ? N1 B DG 24 ? ? C2 B DG 24 ? ? 118.00 125.10 -7.10 0.60 N 170 1 N1 B DG 24 ? ? C2 B DG 24 ? ? N3 B DG 24 ? ? 128.53 123.90 4.63 0.60 N 171 1 C5 B DG 24 ? ? C6 B DG 24 ? ? N1 B DG 24 ? ? 115.60 111.50 4.10 0.50 N 172 1 N9 B DG 24 ? ? C4 B DG 24 ? ? C5 B DG 24 ? ? 108.30 105.40 2.90 0.40 N 173 1 N3 B DG 24 ? ? C2 B DG 24 ? ? N2 B DG 24 ? ? 111.58 119.90 -8.32 0.70 N 174 1 C5 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 123.95 128.60 -4.65 0.60 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 9 A 5CM 9 ? DC ? 2 B 5CM 9 B 5CM 21 ? DC ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 DA OP3 O N N 38 DA P P N N 39 DA OP1 O N N 40 DA OP2 O N N 41 DA "O5'" O N N 42 DA "C5'" C N N 43 DA "C4'" C N R 44 DA "O4'" O N N 45 DA "C3'" C N S 46 DA "O3'" O N N 47 DA "C2'" C N N 48 DA "C1'" C N R 49 DA N9 N Y N 50 DA C8 C Y N 51 DA N7 N Y N 52 DA C5 C Y N 53 DA C6 C Y N 54 DA N6 N N N 55 DA N1 N Y N 56 DA C2 C Y N 57 DA N3 N Y N 58 DA C4 C Y N 59 DA HOP3 H N N 60 DA HOP2 H N N 61 DA "H5'" H N N 62 DA "H5''" H N N 63 DA "H4'" H N N 64 DA "H3'" H N N 65 DA "HO3'" H N N 66 DA "H2'" H N N 67 DA "H2''" H N N 68 DA "H1'" H N N 69 DA H8 H N N 70 DA H61 H N N 71 DA H62 H N N 72 DA H2 H N N 73 DC OP3 O N N 74 DC P P N N 75 DC OP1 O N N 76 DC OP2 O N N 77 DC "O5'" O N N 78 DC "C5'" C N N 79 DC "C4'" C N R 80 DC "O4'" O N N 81 DC "C3'" C N S 82 DC "O3'" O N N 83 DC "C2'" C N N 84 DC "C1'" C N R 85 DC N1 N N N 86 DC C2 C N N 87 DC O2 O N N 88 DC N3 N N N 89 DC C4 C N N 90 DC N4 N N N 91 DC C5 C N N 92 DC C6 C N N 93 DC HOP3 H N N 94 DC HOP2 H N N 95 DC "H5'" H N N 96 DC "H5''" H N N 97 DC "H4'" H N N 98 DC "H3'" H N N 99 DC "HO3'" H N N 100 DC "H2'" H N N 101 DC "H2''" H N N 102 DC "H1'" H N N 103 DC H41 H N N 104 DC H42 H N N 105 DC H5 H N N 106 DC H6 H N N 107 DG OP3 O N N 108 DG P P N N 109 DG OP1 O N N 110 DG OP2 O N N 111 DG "O5'" O N N 112 DG "C5'" C N N 113 DG "C4'" C N R 114 DG "O4'" O N N 115 DG "C3'" C N S 116 DG "O3'" O N N 117 DG "C2'" C N N 118 DG "C1'" C N R 119 DG N9 N Y N 120 DG C8 C Y N 121 DG N7 N Y N 122 DG C5 C Y N 123 DG C6 C N N 124 DG O6 O N N 125 DG N1 N N N 126 DG C2 C N N 127 DG N2 N N N 128 DG N3 N N N 129 DG C4 C Y N 130 DG HOP3 H N N 131 DG HOP2 H N N 132 DG "H5'" H N N 133 DG "H5''" H N N 134 DG "H4'" H N N 135 DG "H3'" H N N 136 DG "HO3'" H N N 137 DG "H2'" H N N 138 DG "H2''" H N N 139 DG "H1'" H N N 140 DG H8 H N N 141 DG H1 H N N 142 DG H21 H N N 143 DG H22 H N N 144 DMY C1 C N N 145 DMY O1 O N N 146 DMY N1 N N N 147 DMY C2 C Y N 148 DMY C3 C Y N 149 DMY C4 C Y N 150 DMY N2 N Y N 151 DMY C5 C Y N 152 DMY C6 C N N 153 DMY C7 C N N 154 DMY O2 O N N 155 DMY N3 N N N 156 DMY C8 C Y N 157 DMY C9 C Y N 158 DMY C10 C Y N 159 DMY N4 N Y N 160 DMY C11 C Y N 161 DMY C12 C N N 162 DMY C13 C N N 163 DMY O3 O N N 164 DMY N5 N N N 165 DMY C14 C Y N 166 DMY C15 C Y N 167 DMY C16 C Y N 168 DMY N6 N Y N 169 DMY C17 C Y N 170 DMY C18 C N N 171 DMY C19 C N N 172 DMY O4 O N N 173 DMY N7 N N N 174 DMY C20 C N N 175 DMY C21 C N N 176 DMY C22 C N N 177 DMY N8 N N N 178 DMY N9 N N N 179 DMY H1 H N N 180 DMY HN1 H N N 181 DMY H3 H N N 182 DMY H5 H N N 183 DMY H61 H N N 184 DMY H62 H N N 185 DMY H63 H N N 186 DMY HN3 H N N 187 DMY H9 H N N 188 DMY H11 H N N 189 DMY H121 H N N 190 DMY H122 H N N 191 DMY H123 H N N 192 DMY HN5 H N N 193 DMY H15 H N N 194 DMY H17 H N N 195 DMY H181 H N N 196 DMY H182 H N N 197 DMY H183 H N N 198 DMY HN7 H N N 199 DMY H201 H N N 200 DMY H202 H N N 201 DMY H211 H N N 202 DMY H212 H N N 203 DMY HN8 H N N 204 DMY HN91 H N N 205 DMY HN92 H N N 206 DT OP3 O N N 207 DT P P N N 208 DT OP1 O N N 209 DT OP2 O N N 210 DT "O5'" O N N 211 DT "C5'" C N N 212 DT "C4'" C N R 213 DT "O4'" O N N 214 DT "C3'" C N S 215 DT "O3'" O N N 216 DT "C2'" C N N 217 DT "C1'" C N R 218 DT N1 N N N 219 DT C2 C N N 220 DT O2 O N N 221 DT N3 N N N 222 DT C4 C N N 223 DT O4 O N N 224 DT C5 C N N 225 DT C7 C N N 226 DT C6 C N N 227 DT HOP3 H N N 228 DT HOP2 H N N 229 DT "H5'" H N N 230 DT "H5''" H N N 231 DT "H4'" H N N 232 DT "H3'" H N N 233 DT "HO3'" H N N 234 DT "H2'" H N N 235 DT "H2''" H N N 236 DT "H1'" H N N 237 DT H3 H N N 238 DT H71 H N N 239 DT H72 H N N 240 DT H73 H N N 241 DT H6 H N N 242 HOH O O N N 243 HOH H1 H N N 244 HOH H2 H N N 245 MG MG MG N N 246 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DA OP3 P sing N N 39 DA OP3 HOP3 sing N N 40 DA P OP1 doub N N 41 DA P OP2 sing N N 42 DA P "O5'" sing N N 43 DA OP2 HOP2 sing N N 44 DA "O5'" "C5'" sing N N 45 DA "C5'" "C4'" sing N N 46 DA "C5'" "H5'" sing N N 47 DA "C5'" "H5''" sing N N 48 DA "C4'" "O4'" sing N N 49 DA "C4'" "C3'" sing N N 50 DA "C4'" "H4'" sing N N 51 DA "O4'" "C1'" sing N N 52 DA "C3'" "O3'" sing N N 53 DA "C3'" "C2'" sing N N 54 DA "C3'" "H3'" sing N N 55 DA "O3'" "HO3'" sing N N 56 DA "C2'" "C1'" sing N N 57 DA "C2'" "H2'" sing N N 58 DA "C2'" "H2''" sing N N 59 DA "C1'" N9 sing N N 60 DA "C1'" "H1'" sing N N 61 DA N9 C8 sing Y N 62 DA N9 C4 sing Y N 63 DA C8 N7 doub Y N 64 DA C8 H8 sing N N 65 DA N7 C5 sing Y N 66 DA C5 C6 sing Y N 67 DA C5 C4 doub Y N 68 DA C6 N6 sing N N 69 DA C6 N1 doub Y N 70 DA N6 H61 sing N N 71 DA N6 H62 sing N N 72 DA N1 C2 sing Y N 73 DA C2 N3 doub Y N 74 DA C2 H2 sing N N 75 DA N3 C4 sing Y N 76 DC OP3 P sing N N 77 DC OP3 HOP3 sing N N 78 DC P OP1 doub N N 79 DC P OP2 sing N N 80 DC P "O5'" sing N N 81 DC OP2 HOP2 sing N N 82 DC "O5'" "C5'" sing N N 83 DC "C5'" "C4'" sing N N 84 DC "C5'" "H5'" sing N N 85 DC "C5'" "H5''" sing N N 86 DC "C4'" "O4'" sing N N 87 DC "C4'" "C3'" sing N N 88 DC "C4'" "H4'" sing N N 89 DC "O4'" "C1'" sing N N 90 DC "C3'" "O3'" sing N N 91 DC "C3'" "C2'" sing N N 92 DC "C3'" "H3'" sing N N 93 DC "O3'" "HO3'" sing N N 94 DC "C2'" "C1'" sing N N 95 DC "C2'" "H2'" sing N N 96 DC "C2'" "H2''" sing N N 97 DC "C1'" N1 sing N N 98 DC "C1'" "H1'" sing N N 99 DC N1 C2 sing N N 100 DC N1 C6 sing N N 101 DC C2 O2 doub N N 102 DC C2 N3 sing N N 103 DC N3 C4 doub N N 104 DC C4 N4 sing N N 105 DC C4 C5 sing N N 106 DC N4 H41 sing N N 107 DC N4 H42 sing N N 108 DC C5 C6 doub N N 109 DC C5 H5 sing N N 110 DC C6 H6 sing N N 111 DG OP3 P sing N N 112 DG OP3 HOP3 sing N N 113 DG P OP1 doub N N 114 DG P OP2 sing N N 115 DG P "O5'" sing N N 116 DG OP2 HOP2 sing N N 117 DG "O5'" "C5'" sing N N 118 DG "C5'" "C4'" sing N N 119 DG "C5'" "H5'" sing N N 120 DG "C5'" "H5''" sing N N 121 DG "C4'" "O4'" sing N N 122 DG "C4'" "C3'" sing N N 123 DG "C4'" "H4'" sing N N 124 DG "O4'" "C1'" sing N N 125 DG "C3'" "O3'" sing N N 126 DG "C3'" "C2'" sing N N 127 DG "C3'" "H3'" sing N N 128 DG "O3'" "HO3'" sing N N 129 DG "C2'" "C1'" sing N N 130 DG "C2'" "H2'" sing N N 131 DG "C2'" "H2''" sing N N 132 DG "C1'" N9 sing N N 133 DG "C1'" "H1'" sing N N 134 DG N9 C8 sing Y N 135 DG N9 C4 sing Y N 136 DG C8 N7 doub Y N 137 DG C8 H8 sing N N 138 DG N7 C5 sing Y N 139 DG C5 C6 sing N N 140 DG C5 C4 doub Y N 141 DG C6 O6 doub N N 142 DG C6 N1 sing N N 143 DG N1 C2 sing N N 144 DG N1 H1 sing N N 145 DG C2 N2 sing N N 146 DG C2 N3 doub N N 147 DG N2 H21 sing N N 148 DG N2 H22 sing N N 149 DG N3 C4 sing N N 150 DMY C1 O1 doub N N 151 DMY C1 N1 sing N N 152 DMY C1 H1 sing N N 153 DMY N1 C2 sing N N 154 DMY N1 HN1 sing N N 155 DMY C2 C3 sing Y N 156 DMY C2 C5 doub Y N 157 DMY C3 C4 doub Y N 158 DMY C3 H3 sing N N 159 DMY C4 N2 sing Y N 160 DMY C4 C7 sing N N 161 DMY N2 C5 sing Y N 162 DMY N2 C6 sing N N 163 DMY C5 H5 sing N N 164 DMY C6 H61 sing N N 165 DMY C6 H62 sing N N 166 DMY C6 H63 sing N N 167 DMY C7 O2 doub N N 168 DMY C7 N3 sing N N 169 DMY N3 C8 sing N N 170 DMY N3 HN3 sing N N 171 DMY C8 C9 sing Y N 172 DMY C8 C11 doub Y N 173 DMY C9 C10 doub Y N 174 DMY C9 H9 sing N N 175 DMY C10 N4 sing Y N 176 DMY C10 C13 sing N N 177 DMY N4 C11 sing Y N 178 DMY N4 C12 sing N N 179 DMY C11 H11 sing N N 180 DMY C12 H121 sing N N 181 DMY C12 H122 sing N N 182 DMY C12 H123 sing N N 183 DMY C13 O3 doub N N 184 DMY C13 N5 sing N N 185 DMY N5 C14 sing N N 186 DMY N5 HN5 sing N N 187 DMY C14 C15 sing Y N 188 DMY C14 C17 doub Y N 189 DMY C15 C16 doub Y N 190 DMY C15 H15 sing N N 191 DMY C16 N6 sing Y N 192 DMY C16 C19 sing N N 193 DMY N6 C17 sing Y N 194 DMY N6 C18 sing N N 195 DMY C17 H17 sing N N 196 DMY C18 H181 sing N N 197 DMY C18 H182 sing N N 198 DMY C18 H183 sing N N 199 DMY C19 O4 doub N N 200 DMY C19 N7 sing N N 201 DMY N7 C20 sing N N 202 DMY N7 HN7 sing N N 203 DMY C20 C21 sing N N 204 DMY C20 H201 sing N N 205 DMY C20 H202 sing N N 206 DMY C21 C22 sing N N 207 DMY C21 H211 sing N N 208 DMY C21 H212 sing N N 209 DMY C22 N8 doub N N 210 DMY C22 N9 sing N N 211 DMY N8 HN8 sing N N 212 DMY N9 HN91 sing N N 213 DMY N9 HN92 sing N N 214 DT OP3 P sing N N 215 DT OP3 HOP3 sing N N 216 DT P OP1 doub N N 217 DT P OP2 sing N N 218 DT P "O5'" sing N N 219 DT OP2 HOP2 sing N N 220 DT "O5'" "C5'" sing N N 221 DT "C5'" "C4'" sing N N 222 DT "C5'" "H5'" sing N N 223 DT "C5'" "H5''" sing N N 224 DT "C4'" "O4'" sing N N 225 DT "C4'" "C3'" sing N N 226 DT "C4'" "H4'" sing N N 227 DT "O4'" "C1'" sing N N 228 DT "C3'" "O3'" sing N N 229 DT "C3'" "C2'" sing N N 230 DT "C3'" "H3'" sing N N 231 DT "O3'" "HO3'" sing N N 232 DT "C2'" "C1'" sing N N 233 DT "C2'" "H2'" sing N N 234 DT "C2'" "H2''" sing N N 235 DT "C1'" N1 sing N N 236 DT "C1'" "H1'" sing N N 237 DT N1 C2 sing N N 238 DT N1 C6 sing N N 239 DT C2 O2 doub N N 240 DT C2 N3 sing N N 241 DT N3 C4 sing N N 242 DT N3 H3 sing N N 243 DT C4 O4 doub N N 244 DT C4 C5 sing N N 245 DT C5 C7 sing N N 246 DT C5 C6 doub N N 247 DT C7 H71 sing N N 248 DT C7 H72 sing N N 249 DT C7 H73 sing N N 250 DT C6 H6 sing N N 251 HOH O H1 sing N N 252 HOH O H2 sing N N 253 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 267D 'double helix' 267D 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 -0.502 -0.150 0.065 3.322 -19.724 1.068 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.250 -0.746 0.516 -2.428 -14.051 -1.234 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.359 -0.415 0.042 -3.047 0.190 -0.525 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B 5CM 9 1_555 -0.278 -0.345 -0.095 8.920 -10.287 -3.660 4 A_DG4:5CM21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.495 -0.368 0.040 8.061 -15.439 -2.405 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.133 -0.644 0.025 1.772 -17.600 -6.665 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.121 -0.235 0.280 -4.709 -14.236 2.825 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.631 -0.423 0.131 -2.338 -22.007 4.791 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A 5CM 9 1_555 B DG 4 1_555 -0.600 -0.236 0.038 -7.652 -23.090 -12.322 9 A_5CM9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.131 -0.298 0.033 4.035 -8.089 -2.750 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 -0.167 -0.516 0.656 -0.439 -15.339 -5.142 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 0.195 -0.449 0.192 1.739 11.450 -7.330 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.200 -0.069 3.430 -5.365 7.337 38.237 -1.023 -0.375 3.358 11.012 8.051 39.263 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.497 0.264 3.501 5.123 -6.199 39.395 1.142 -0.097 3.458 -9.081 -7.505 40.175 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B 5CM 9 1_555 -0.231 0.668 3.110 1.134 14.211 26.991 -1.575 0.666 3.060 28.096 -2.243 30.463 3 AA_DC3DG4:5CM21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B 5CM 9 1_555 A DA 5 1_555 B DT 8 1_555 0.346 -0.280 3.465 -0.342 -2.224 34.933 -0.110 -0.631 3.473 -3.700 0.569 35.004 4 AA_DG4DA5:DT205CM21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.490 0.083 3.306 -0.029 5.047 36.414 -0.566 0.773 3.289 8.029 0.047 36.750 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.411 -0.640 3.444 -0.153 -3.736 37.593 -0.477 -0.656 3.488 -5.781 0.236 37.772 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.257 0.096 3.078 3.525 4.425 34.198 -0.483 0.081 3.076 7.461 -5.944 34.649 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A 5CM 9 1_555 B DG 4 1_555 -0.585 -0.150 3.500 0.743 -3.977 33.891 0.420 1.123 3.481 -6.792 -1.269 34.124 8 AA_DT85CM9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A 5CM 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.540 0.908 3.231 -0.820 12.355 34.152 -0.335 -0.987 3.337 20.231 1.343 36.265 9 AA_5CM9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.806 0.900 3.565 -7.289 -16.904 40.947 2.828 0.350 3.077 -22.825 9.842 44.732 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.786 0.389 3.424 8.458 -5.009 37.466 1.244 -0.079 3.437 -7.639 -12.898 38.689 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 267D _atom_sites.fract_transf_matrix[1][1] 0.040132 _atom_sites.fract_transf_matrix[1][2] -0.000001 _atom_sites.fract_transf_matrix[1][3] -0.000001 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024912 _atom_sites.fract_transf_matrix[2][3] -0.000001 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015082 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_