data_268D # _entry.id 268D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 268D pdb_0000268d 10.2210/pdb268d/pdb RCSB GDLB42 ? ? WWPDB D_1000177680 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-08-28 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-02-29 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Other 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_conn_type 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.value' 10 5 'Structure model' '_struct_conn.conn_type_id' 11 5 'Structure model' '_struct_conn.id' 12 5 'Structure model' '_struct_conn.pdbx_dist_value' 13 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 22 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 5 'Structure model' '_struct_conn_type.id' 29 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 268D _pdbx_database_status.recvd_initial_deposition_date 1996-07-12 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 265D unspecified . PDB 266D unspecified . PDB 267D unspecified . PDB 269D unspecified . PDB 270D unspecified . PDB 271D unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Partridge, B.L.' 1 'Salisbury, S.A.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI 1 'Structural Studies on Nucleic Acids' 'Thesis, University of Cambridge' ? ? ? 1996 ? UK ? 2108 ? ? ? primary ? 'To be Published' ? ? ? 1996 ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Partridge, B.L.' 1 ? primary 'Salisbury, S.A.' 2 ? 1 'Partridge, B.L.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5CM)P*GP*CP*G)-3') ; 3677.419 2 ? ? ? ? 2 non-polymer syn BERENIL 281.316 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 111 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(5CM)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BERENIL BRN 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 5CM n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 BRN non-polymer . BERENIL ;DIMINAZINE ACETURATE; 1,3-TRIS-(4'AMIDINOPHENYL)TRIAZINE ; 'C14 H15 N7' 281.316 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 5CM 9 9 9 5CM +C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 5CM 9 21 21 5CM +C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BRN 1 25 25 BRN BRN A . D 3 MG 1 26 26 MG MO6 A . E 4 HOH 1 28 28 HOH HOH A . E 4 HOH 2 29 29 HOH HOH A . E 4 HOH 3 30 30 HOH HOH A . E 4 HOH 4 31 31 HOH HOH A . E 4 HOH 5 32 32 HOH HOH A . E 4 HOH 6 33 33 HOH HOH A . E 4 HOH 7 34 34 HOH HOH A . E 4 HOH 8 35 35 HOH HOH A . E 4 HOH 9 38 38 HOH HOH A . E 4 HOH 10 40 40 HOH HOH A . E 4 HOH 11 41 41 HOH HOH A . E 4 HOH 12 42 42 HOH HOH A . E 4 HOH 13 43 43 HOH HOH A . E 4 HOH 14 44 44 HOH HOH A . E 4 HOH 15 45 45 HOH HOH A . E 4 HOH 16 46 46 HOH HOH A . E 4 HOH 17 48 48 HOH HOH A . E 4 HOH 18 50 50 HOH HOH A . E 4 HOH 19 52 52 HOH HOH A . E 4 HOH 20 54 54 HOH HOH A . E 4 HOH 21 55 55 HOH HOH A . E 4 HOH 22 58 58 HOH HOH A . E 4 HOH 23 61 61 HOH HOH A . E 4 HOH 24 62 62 HOH HOH A . E 4 HOH 25 63 63 HOH HOH A . E 4 HOH 26 64 64 HOH HOH A . E 4 HOH 27 68 68 HOH HOH A . E 4 HOH 28 70 70 HOH HOH A . E 4 HOH 29 75 75 HOH HOH A . E 4 HOH 30 77 77 HOH HOH A . E 4 HOH 31 78 78 HOH HOH A . E 4 HOH 32 81 81 HOH HOH A . E 4 HOH 33 82 82 HOH HOH A . E 4 HOH 34 85 85 HOH HOH A . E 4 HOH 35 87 87 HOH HOH A . E 4 HOH 36 88 88 HOH HOH A . E 4 HOH 37 89 89 HOH HOH A . E 4 HOH 38 91 91 HOH HOH A . E 4 HOH 39 92 92 HOH HOH A . E 4 HOH 40 93 93 HOH HOH A . E 4 HOH 41 95 95 HOH HOH A . E 4 HOH 42 100 100 HOH HOH A . E 4 HOH 43 101 101 HOH HOH A . E 4 HOH 44 103 103 HOH HOH A . E 4 HOH 45 105 105 HOH HOH A . E 4 HOH 46 106 106 HOH HOH A . E 4 HOH 47 107 107 HOH HOH A . E 4 HOH 48 110 110 HOH HOH A . E 4 HOH 49 111 111 HOH HOH A . E 4 HOH 50 112 112 HOH HOH A . E 4 HOH 51 114 114 HOH HOH A . E 4 HOH 52 115 115 HOH HOH A . E 4 HOH 53 120 120 HOH HOH A . E 4 HOH 54 123 123 HOH HOH A . E 4 HOH 55 126 126 HOH HOH A . E 4 HOH 56 127 127 HOH HOH A . E 4 HOH 57 130 130 HOH HOH A . E 4 HOH 58 132 26 HOH MO6 A . E 4 HOH 59 133 26 HOH MO6 A . E 4 HOH 60 135 26 HOH MO6 A . E 4 HOH 61 136 26 HOH MO6 A . E 4 HOH 62 137 26 HOH MO6 A . F 4 HOH 1 27 27 HOH HOH B . F 4 HOH 2 36 36 HOH HOH B . F 4 HOH 3 37 37 HOH HOH B . F 4 HOH 4 39 39 HOH HOH B . F 4 HOH 5 47 47 HOH HOH B . F 4 HOH 6 49 49 HOH HOH B . F 4 HOH 7 51 51 HOH HOH B . F 4 HOH 8 53 53 HOH HOH B . F 4 HOH 9 56 56 HOH HOH B . F 4 HOH 10 57 57 HOH HOH B . F 4 HOH 11 59 59 HOH HOH B . F 4 HOH 12 60 60 HOH HOH B . F 4 HOH 13 65 65 HOH HOH B . F 4 HOH 14 66 66 HOH HOH B . F 4 HOH 15 67 67 HOH HOH B . F 4 HOH 16 69 69 HOH HOH B . F 4 HOH 17 71 71 HOH HOH B . F 4 HOH 18 72 72 HOH HOH B . F 4 HOH 19 73 73 HOH HOH B . F 4 HOH 20 74 74 HOH HOH B . F 4 HOH 21 76 76 HOH HOH B . F 4 HOH 22 79 79 HOH HOH B . F 4 HOH 23 80 80 HOH HOH B . F 4 HOH 24 83 83 HOH HOH B . F 4 HOH 25 84 84 HOH HOH B . F 4 HOH 26 86 86 HOH HOH B . F 4 HOH 27 90 90 HOH HOH B . F 4 HOH 28 94 94 HOH HOH B . F 4 HOH 29 96 96 HOH HOH B . F 4 HOH 30 97 97 HOH HOH B . F 4 HOH 31 98 98 HOH HOH B . F 4 HOH 32 99 99 HOH HOH B . F 4 HOH 33 102 102 HOH HOH B . F 4 HOH 34 104 104 HOH HOH B . F 4 HOH 35 108 108 HOH HOH B . F 4 HOH 36 109 109 HOH HOH B . F 4 HOH 37 113 113 HOH HOH B . F 4 HOH 38 116 116 HOH HOH B . F 4 HOH 39 117 117 HOH HOH B . F 4 HOH 40 118 118 HOH HOH B . F 4 HOH 41 119 119 HOH HOH B . F 4 HOH 42 121 121 HOH HOH B . F 4 HOH 43 122 122 HOH HOH B . F 4 HOH 44 124 124 HOH HOH B . F 4 HOH 45 125 125 HOH HOH B . F 4 HOH 46 128 128 HOH HOH B . F 4 HOH 47 129 129 HOH HOH B . F 4 HOH 48 131 131 HOH HOH B . F 4 HOH 49 134 26 HOH MO6 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal NUCLSQ refinement . ? 1 RIGAKU 'data reduction' . ? 2 RIGAKU 'data scaling' . ? 3 # _cell.entry_id 268D _cell.length_a 24.744 _cell.length_b 40.193 _cell.length_c 65.322 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 268D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 268D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.30 _exptl_crystal.density_Matthews 2.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.10 _exptl_crystal_grow.pdbx_details 'pH 7.10' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'NA CACODYLATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1995-05-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 268D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.200 _reflns.d_resolution_high 2.020 _reflns.number_obs 10301 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.0567 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 268D _refine.ls_number_reflns_obs 4308 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.020 _refine.ls_percent_reflns_obs 90.500 _refine.ls_R_factor_obs 0.16 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;STANDARD R-FACTOR = 16.0% ERROR R-FACTOR = 4.5% WEIGHTED R-FACTOR = 15.1% NUMBER OF REFLECTIONS INCLUDED = 13587 AVERAGE |FO-FC| DISCREPANCY = 19.50 AVERAGE WEIGHTED |FO-FC| DISCREPANCY = 0.03 CORRELATION COEFFICIENT = 101.5% RESOLUTION BREAKDOWN "ALL" R FACTOR = 14.2% ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 488 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 621 _refine_hist.d_res_high 2.020 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it 11.089 7.500 ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it 12.593 7.500 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it 12.684 7.500 ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it 11.982 7.500 ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.036 0.015 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.072 0.025 ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.039 0.015 ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr 0.074 0.040 ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd 0.162 0.063 ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd 0.287 0.063 ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 268D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 268D _struct.title 'STRUCTURAL STUDIES ON NUCLEIC ACIDS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 268D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, MODIFIED, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 268D _struct_ref.pdbx_db_accession 268D _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 268D A 1 ? 12 ? 268D 1 ? 12 ? 1 12 2 1 268D B 1 ? 12 ? 268D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 8 "O3'" ? ? ? 1_555 A 5CM 9 P ? ? A DT 8 A 5CM 9 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale2 covale both ? A 5CM 9 "O3'" ? ? ? 1_555 A DG 10 P ? ? A 5CM 9 A DG 10 1_555 ? ? ? ? ? ? ? 1.573 ? ? covale3 covale both ? B DT 8 "O3'" ? ? ? 1_555 B 5CM 9 P ? ? B DT 20 B 5CM 21 1_555 ? ? ? ? ? ? ? 1.572 ? ? covale4 covale both ? B 5CM 9 "O3'" ? ? ? 1_555 B DG 10 P ? ? B 5CM 21 B DG 22 1_555 ? ? ? ? ? ? ? 1.610 ? ? metalc1 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 132 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc2 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 133 1_555 ? ? ? ? ? ? ? 1.957 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 135 1_555 ? ? ? ? ? ? ? 1.947 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 136 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 137 1_555 ? ? ? ? ? ? ? 1.879 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 134 1_555 ? ? ? ? ? ? ? 2.138 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B 5CM 9 N3 ? ? A DG 4 B 5CM 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B 5CM 9 O2 ? ? A DG 4 B 5CM 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B 5CM 9 N4 ? ? A DG 4 B 5CM 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A 5CM 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A 5CM 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A 5CM 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A 5CM 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A 5CM 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A 5CM 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 132 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 133 ? 1_555 174.4 ? 2 O ? E HOH . ? A HOH 132 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 135 ? 1_555 88.5 ? 3 O ? E HOH . ? A HOH 133 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 135 ? 1_555 97.0 ? 4 O ? E HOH . ? A HOH 132 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 136 ? 1_555 90.3 ? 5 O ? E HOH . ? A HOH 133 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 136 ? 1_555 88.7 ? 6 O ? E HOH . ? A HOH 135 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 136 ? 1_555 88.1 ? 7 O ? E HOH . ? A HOH 132 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 137 ? 1_555 89.0 ? 8 O ? E HOH . ? A HOH 133 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 137 ? 1_555 91.7 ? 9 O ? E HOH . ? A HOH 135 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 137 ? 1_555 94.9 ? 10 O ? E HOH . ? A HOH 136 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 137 ? 1_555 176.8 ? 11 O ? E HOH . ? A HOH 132 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 134 ? 1_555 87.9 ? 12 O ? E HOH . ? A HOH 133 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 134 ? 1_555 86.4 ? 13 O ? E HOH . ? A HOH 135 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 134 ? 1_555 170.6 ? 14 O ? E HOH . ? A HOH 136 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 134 ? 1_555 83.2 ? 15 O ? E HOH . ? A HOH 137 ? 1_555 MG ? D MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 134 ? 1_555 93.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BRN 25 ? 12 'BINDING SITE FOR RESIDUE BRN A 25' AC2 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DA A 6 ? DA A 6 . ? 1_555 ? 2 AC1 12 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC1 12 DT A 8 ? DT A 8 . ? 1_555 ? 4 AC1 12 5CM A 9 ? 5CM A 9 . ? 1_555 ? 5 AC1 12 HOH E . ? HOH A 95 . ? 1_555 ? 6 AC1 12 HOH E . ? HOH A 127 . ? 1_555 ? 7 AC1 12 DA B 5 ? DA B 17 . ? 1_555 ? 8 AC1 12 DA B 6 ? DA B 18 . ? 1_555 ? 9 AC1 12 DT B 7 ? DT B 19 . ? 1_555 ? 10 AC1 12 DT B 8 ? DT B 20 . ? 1_555 ? 11 AC1 12 5CM B 9 ? 5CM B 21 . ? 1_555 ? 12 AC1 12 HOH F . ? HOH B 104 . ? 1_555 ? 13 AC2 6 HOH E . ? HOH A 132 . ? 1_555 ? 14 AC2 6 HOH E . ? HOH A 133 . ? 1_555 ? 15 AC2 6 HOH E . ? HOH A 135 . ? 1_555 ? 16 AC2 6 HOH E . ? HOH A 136 . ? 1_555 ? 17 AC2 6 HOH E . ? HOH A 137 . ? 1_555 ? 18 AC2 6 HOH F . ? HOH B 134 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 A DA 6 ? ? O A HOH 101 ? ? 2.02 2 1 OP1 A DG 10 ? ? O A HOH 89 ? ? 2.05 3 1 O6 A DG 4 ? ? O A HOH 106 ? ? 2.08 4 1 OP1 A DC 11 ? ? O A HOH 64 ? ? 2.16 5 1 O B HOH 76 ? ? O B HOH 79 ? ? 2.19 6 1 O A HOH 45 ? ? O A HOH 105 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP1 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 DC _pdbx_validate_symm_contact.auth_seq_id_1 15 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 55 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_664 _pdbx_validate_symm_contact.dist 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.601 1.512 0.089 0.007 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.496 1.420 0.076 0.011 N 3 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.363 1.446 -0.083 0.010 N 4 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.379 1.419 -0.040 0.006 N 5 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.377 1.335 0.042 0.007 N 6 1 "O3'" A DC 1 ? ? P A DG 2 ? ? 1.500 1.607 -0.107 0.012 Y 7 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.559 1.512 0.047 0.007 N 8 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.378 1.446 -0.068 0.010 N 9 1 "O3'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.369 1.419 -0.050 0.006 N 10 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.359 1.305 0.054 0.006 N 11 1 C6 A DG 4 ? ? N1 A DG 4 ? ? 1.347 1.391 -0.044 0.007 N 12 1 C5 A DG 4 ? ? N7 A DG 4 ? ? 1.427 1.388 0.039 0.006 N 13 1 N1 A DA 5 ? ? C2 A DA 5 ? ? 1.407 1.339 0.068 0.009 N 14 1 C6 A DA 5 ? ? N1 A DA 5 ? ? 1.294 1.351 -0.057 0.007 N 15 1 C8 A DA 5 ? ? N9 A DA 5 ? ? 1.323 1.373 -0.050 0.008 N 16 1 C6 A DA 5 ? ? N6 A DA 5 ? ? 1.280 1.335 -0.055 0.008 N 17 1 C2 A DA 6 ? ? N3 A DA 6 ? ? 1.396 1.331 0.065 0.009 N 18 1 N3 A DA 6 ? ? C4 A DA 6 ? ? 1.388 1.344 0.044 0.006 N 19 1 C6 A DA 6 ? ? N1 A DA 6 ? ? 1.409 1.351 0.058 0.007 N 20 1 C5 A DA 6 ? ? N7 A DA 6 ? ? 1.338 1.388 -0.050 0.006 N 21 1 C8 A DA 6 ? ? N9 A DA 6 ? ? 1.288 1.373 -0.085 0.008 N 22 1 "O3'" A DA 6 ? ? P A DT 7 ? ? 1.494 1.607 -0.113 0.012 Y 23 1 "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 1.565 1.512 0.053 0.007 N 24 1 "C2'" A DT 7 ? ? "C1'" A DT 7 ? ? 1.418 1.518 -0.100 0.010 N 25 1 "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 1.329 1.446 -0.117 0.010 N 26 1 C2 A DT 7 ? ? O2 A DT 7 ? ? 1.279 1.220 0.059 0.008 N 27 1 "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? 1.557 1.512 0.045 0.007 N 28 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 1.344 1.446 -0.102 0.010 N 29 1 C6 A DT 8 ? ? N1 A DT 8 ? ? 1.428 1.378 0.050 0.007 N 30 1 C2 A DT 8 ? ? O2 A DT 8 ? ? 1.272 1.220 0.052 0.008 N 31 1 "O3'" A DG 10 ? ? P A DC 11 ? ? 1.688 1.607 0.081 0.012 Y 32 1 "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 1.562 1.512 0.050 0.007 N 33 1 C2 A DC 11 ? ? O2 A DC 11 ? ? 1.184 1.240 -0.056 0.009 N 34 1 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.278 1.335 -0.057 0.009 N 35 1 C5 A DC 11 ? ? C6 A DC 11 ? ? 1.388 1.339 0.049 0.008 N 36 1 "C2'" B DC 13 ? ? "C1'" B DC 13 ? ? 1.450 1.518 -0.068 0.010 N 37 1 "O3'" B DC 13 ? ? "C3'" B DC 13 ? ? 1.368 1.419 -0.051 0.006 N 38 1 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.579 1.512 0.067 0.007 N 39 1 "C2'" B DC 15 ? ? "C1'" B DC 15 ? ? 1.425 1.518 -0.093 0.010 N 40 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? 1.537 1.420 0.117 0.011 N 41 1 C6 B DG 16 ? ? N1 B DG 16 ? ? 1.323 1.391 -0.068 0.007 N 42 1 C5 B DG 16 ? ? N7 B DG 16 ? ? 1.443 1.388 0.055 0.006 N 43 1 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? 1.384 1.446 -0.062 0.010 N 44 1 C5 B DA 17 ? ? N7 B DA 17 ? ? 1.439 1.388 0.051 0.006 N 45 1 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.431 1.335 0.096 0.008 N 46 1 N1 B DA 18 ? ? C2 B DA 18 ? ? 1.426 1.339 0.087 0.009 N 47 1 N3 B DA 18 ? ? C4 B DA 18 ? ? 1.412 1.344 0.068 0.006 N 48 1 C5 B DA 18 ? ? N7 B DA 18 ? ? 1.450 1.388 0.062 0.006 N 49 1 N9 B DA 18 ? ? C4 B DA 18 ? ? 1.427 1.374 0.053 0.006 N 50 1 N3 B DT 19 ? ? C4 B DT 19 ? ? 1.325 1.382 -0.057 0.008 N 51 1 C5 B DT 19 ? ? C7 B DT 19 ? ? 1.453 1.496 -0.043 0.006 N 52 1 P B DT 20 ? ? "O5'" B DT 20 ? ? 1.665 1.593 0.072 0.010 N 53 1 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? 1.607 1.529 0.078 0.010 N 54 1 "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 1.456 1.516 -0.060 0.008 N 55 1 "O4'" B DT 20 ? ? "C4'" B DT 20 ? ? 1.377 1.446 -0.069 0.010 N 56 1 C8 B DG 22 ? ? N9 B DG 22 ? ? 1.422 1.374 0.048 0.007 N 57 1 C6 B DG 22 ? ? O6 B DG 22 ? ? 1.179 1.237 -0.058 0.009 N 58 1 "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? 1.441 1.509 -0.068 0.011 N 59 1 "C2'" B DC 23 ? ? "C1'" B DC 23 ? ? 1.454 1.518 -0.064 0.010 N 60 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? 1.494 1.420 0.074 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 92.48 109.40 -16.92 0.80 N 2 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 101.68 104.50 -2.82 0.40 N 3 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "O4'" A DC 1 ? ? 123.98 109.80 14.18 1.10 N 4 1 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 108.83 103.10 5.73 0.90 N 5 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.47 108.30 4.17 0.30 N 6 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 143.26 119.70 23.56 1.20 Y 7 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 93.70 109.40 -15.70 0.80 N 8 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 116.00 108.30 7.70 0.30 N 9 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 121.15 125.10 -3.95 0.60 N 10 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 114.97 119.90 -4.93 0.70 N 11 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 141.47 119.70 21.77 1.20 Y 12 1 "O5'" A DC 3 ? ? P A DC 3 ? ? OP1 A DC 3 ? ? 123.19 110.70 12.49 1.20 N 13 1 "C1'" A DC 3 ? ? "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 103.71 110.10 -6.39 1.00 N 14 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.24 108.30 2.94 0.30 N 15 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 93.27 109.40 -16.13 0.80 N 16 1 "C1'" A DG 4 ? ? "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? 114.79 110.30 4.49 0.70 N 17 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 119.22 125.10 -5.88 0.60 N 18 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N3 A DG 4 ? ? 128.88 123.90 4.98 0.60 N 19 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 116.32 111.50 4.82 0.50 N 20 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 115.42 119.90 -4.48 0.70 N 21 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 112.95 119.90 -6.95 0.60 N 22 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DA 5 ? ? 138.97 119.70 19.27 1.20 Y 23 1 "O3'" A DG 4 ? ? P A DA 5 ? ? "O5'" A DA 5 ? ? 121.34 104.00 17.34 1.90 Y 24 1 P A DA 5 ? ? "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? 130.77 120.90 9.87 1.60 N 25 1 C6 A DA 5 ? ? N1 A DA 5 ? ? C2 A DA 5 ? ? 125.62 118.60 7.02 0.60 N 26 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 123.46 129.30 -5.84 0.50 N 27 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 112.64 117.70 -5.06 0.50 N 28 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DA 6 ? ? 133.85 119.70 14.15 1.20 Y 29 1 "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 109.71 106.00 3.71 0.60 N 30 1 "C1'" A DA 6 ? ? "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? 101.49 110.10 -8.61 1.00 N 31 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? "C2'" A DA 6 ? ? 110.16 106.80 3.36 0.50 N 32 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 102.99 108.00 -5.01 0.70 N 33 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 104.21 110.60 -6.39 0.50 N 34 1 N3 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 131.78 126.80 4.98 0.70 N 35 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 113.07 117.70 -4.63 0.50 N 36 1 C8 A DA 6 ? ? N9 A DA 6 ? ? C4 A DA 6 ? ? 108.87 105.80 3.07 0.40 N 37 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 125.79 118.60 7.19 0.60 N 38 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 137.75 119.70 18.05 1.20 Y 39 1 "O3'" A DA 6 ? ? P A DT 7 ? ? OP1 A DT 7 ? ? 120.41 110.50 9.91 1.10 Y 40 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 104.59 109.40 -4.81 0.80 N 41 1 OP1 A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 129.94 119.60 10.34 1.50 N 42 1 "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? 98.01 109.40 -11.39 0.80 N 43 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 103.50 108.00 -4.50 0.70 N 44 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 120.15 114.60 5.55 0.60 N 45 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 118.93 127.20 -8.27 0.60 N 46 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 119.38 115.20 4.18 0.60 N 47 1 C5 A DT 8 ? ? C6 A DT 8 ? ? N1 A DT 8 ? ? 117.28 123.70 -6.42 0.60 N 48 1 N1 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 117.64 123.10 -5.46 0.80 N 49 1 N3 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 112.64 119.90 -7.26 0.60 N 50 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 116.37 122.90 -6.53 0.60 N 51 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A 5CM 9 ? ? 131.87 119.70 12.17 1.20 Y 52 1 "C3'" A 5CM 9 ? ? "O3'" A 5CM 9 ? ? P A DG 10 ? ? 133.24 119.70 13.54 1.20 Y 53 1 "O3'" A 5CM 9 ? ? P A DG 10 ? ? OP1 A DG 10 ? ? 118.03 110.50 7.53 1.10 Y 54 1 "C1'" A DG 10 ? ? "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 102.96 110.10 -7.14 1.00 N 55 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 94.58 102.40 -7.82 0.80 N 56 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 114.71 108.30 6.41 0.30 N 57 1 N3 A DG 10 ? ? C2 A DG 10 ? ? N2 A DG 10 ? ? 112.08 119.90 -7.82 0.70 N 58 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.49 128.60 -4.11 0.60 N 59 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP1 A DC 11 ? ? 95.38 105.70 -10.32 0.90 N 60 1 "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 104.22 109.40 -5.18 0.80 N 61 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 101.03 105.90 -4.87 0.80 N 62 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.48 108.30 2.18 0.30 N 63 1 C2 A DC 11 ? ? N3 A DC 11 ? ? C4 A DC 11 ? ? 122.95 119.90 3.05 0.50 N 64 1 N3 A DC 11 ? ? C4 A DC 11 ? ? C5 A DC 11 ? ? 118.40 121.90 -3.50 0.40 N 65 1 N3 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 127.06 118.00 9.06 0.70 N 66 1 C5 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 114.53 120.20 -5.67 0.70 N 67 1 "C3'" A DC 11 ? ? "O3'" A DC 11 ? ? P A DG 12 ? ? 130.45 119.70 10.75 1.20 Y 68 1 OP1 A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 129.73 119.60 10.13 1.50 N 69 1 "O5'" A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 99.69 105.70 -6.01 0.90 N 70 1 "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 95.85 109.40 -13.55 0.80 N 71 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 114.90 108.30 6.60 0.30 N 72 1 C6 A DG 12 ? ? N1 A DG 12 ? ? C2 A DG 12 ? ? 119.36 125.10 -5.74 0.60 N 73 1 N1 A DG 12 ? ? C2 A DG 12 ? ? N3 A DG 12 ? ? 127.67 123.90 3.77 0.60 N 74 1 C5 A DG 12 ? ? C6 A DG 12 ? ? N1 A DG 12 ? ? 116.08 111.50 4.58 0.50 N 75 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 102.19 108.00 -5.81 0.70 N 76 1 N1 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 122.90 118.90 4.00 0.60 N 77 1 "C3'" B DC 13 ? ? "O3'" B DC 13 ? ? P B DG 14 ? ? 131.47 119.70 11.77 1.20 Y 78 1 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 108.77 103.10 5.67 0.90 N 79 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 99.18 108.00 -8.82 0.70 N 80 1 C6 B DG 14 ? ? N1 B DG 14 ? ? C2 B DG 14 ? ? 121.35 125.10 -3.75 0.60 N 81 1 C2 B DG 14 ? ? N3 B DG 14 ? ? C4 B DG 14 ? ? 115.02 111.90 3.12 0.50 N 82 1 C5 B DG 14 ? ? C6 B DG 14 ? ? N1 B DG 14 ? ? 117.07 111.50 5.57 0.50 N 83 1 C4 B DG 14 ? ? C5 B DG 14 ? ? N7 B DG 14 ? ? 107.94 110.80 -2.86 0.40 N 84 1 C5 B DG 14 ? ? N7 B DG 14 ? ? C8 B DG 14 ? ? 108.33 104.30 4.03 0.50 N 85 1 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 109.00 113.10 -4.10 0.50 N 86 1 C6 B DG 14 ? ? C5 B DG 14 ? ? N7 B DG 14 ? ? 135.06 130.40 4.66 0.60 N 87 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 122.67 116.20 6.47 0.90 N 88 1 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 113.05 119.90 -6.85 0.70 N 89 1 C5 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 122.03 128.60 -6.57 0.60 N 90 1 OP1 B DC 15 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 137.27 119.60 17.67 1.50 N 91 1 "O5'" B DC 15 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 99.07 105.70 -6.63 0.90 N 92 1 "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 91.09 109.40 -18.31 0.80 N 93 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.39 108.30 3.09 0.30 N 94 1 C2 B DC 15 ? ? N3 B DC 15 ? ? C4 B DC 15 ? ? 123.72 119.90 3.82 0.50 N 95 1 N3 B DC 15 ? ? C4 B DC 15 ? ? C5 B DC 15 ? ? 118.76 121.90 -3.14 0.40 N 96 1 C5 B DC 15 ? ? C6 B DC 15 ? ? N1 B DC 15 ? ? 124.50 121.00 3.50 0.50 N 97 1 N1 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 114.50 118.90 -4.40 0.60 N 98 1 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 127.15 121.90 5.25 0.70 N 99 1 N3 B DC 15 ? ? C4 B DC 15 ? ? N4 B DC 15 ? ? 125.95 118.00 7.95 0.70 N 100 1 C5 B DC 15 ? ? C4 B DC 15 ? ? N4 B DC 15 ? ? 115.04 120.20 -5.16 0.70 N 101 1 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DG 16 ? ? 127.35 119.70 7.65 1.20 Y 102 1 "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 99.43 109.40 -9.97 0.80 N 103 1 "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? "C1'" B DG 16 ? ? 97.32 102.40 -5.08 0.80 N 104 1 N1 B DG 16 ? ? C2 B DG 16 ? ? N3 B DG 16 ? ? 127.56 123.90 3.66 0.60 N 105 1 C2 B DG 16 ? ? N3 B DG 16 ? ? C4 B DG 16 ? ? 108.76 111.90 -3.14 0.50 N 106 1 N3 B DG 16 ? ? C2 B DG 16 ? ? N2 B DG 16 ? ? 114.91 119.90 -4.99 0.70 N 107 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 140.09 119.70 20.39 1.20 Y 108 1 OP1 B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 103.57 119.60 -16.03 1.50 N 109 1 P B DA 17 ? ? "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? 108.59 120.90 -12.31 1.60 N 110 1 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 101.47 104.50 -3.03 0.40 N 111 1 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? "O4'" B DA 17 ? ? 118.02 109.80 8.22 1.10 N 112 1 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 96.25 102.40 -6.15 0.80 N 113 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? "C2'" B DA 17 ? ? 100.81 105.90 -5.09 0.80 N 114 1 N1 B DA 17 ? ? C2 B DA 17 ? ? N3 B DA 17 ? ? 122.27 129.30 -7.03 0.50 N 115 1 C2 B DA 17 ? ? N3 B DA 17 ? ? C4 B DA 17 ? ? 115.13 110.60 4.53 0.50 N 116 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 123.34 118.60 4.74 0.60 N 117 1 "O5'" B DA 18 ? ? P B DA 18 ? ? OP1 B DA 18 ? ? 119.63 110.70 8.93 1.20 N 118 1 "C1'" B DA 18 ? ? "O4'" B DA 18 ? ? "C4'" B DA 18 ? ? 103.59 110.10 -6.51 1.00 N 119 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 98.52 108.00 -9.48 0.70 N 120 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 128.49 118.60 9.89 0.60 N 121 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 116.65 129.30 -12.65 0.50 N 122 1 C2 B DA 18 ? ? N3 B DA 18 ? ? C4 B DA 18 ? ? 116.70 110.60 6.10 0.50 N 123 1 C8 B DA 18 ? ? N9 B DA 18 ? ? C4 B DA 18 ? ? 109.50 105.80 3.70 0.40 N 124 1 N9 B DA 18 ? ? C4 B DA 18 ? ? C5 B DA 18 ? ? 103.10 105.80 -2.70 0.40 N 125 1 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 122.48 118.60 3.88 0.60 N 126 1 "O5'" B DT 19 ? ? "C5'" B DT 19 ? ? "C4'" B DT 19 ? ? 102.28 109.40 -7.12 0.80 N 127 1 "C1'" B DT 19 ? ? "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? 102.61 110.10 -7.49 1.00 N 128 1 N1 B DT 19 ? ? C2 B DT 19 ? ? O2 B DT 19 ? ? 118.19 123.10 -4.91 0.80 N 129 1 N3 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 124.81 119.90 4.91 0.60 N 130 1 C5 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 120.00 124.90 -4.90 0.70 N 131 1 C4 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 123.36 119.00 4.36 0.60 N 132 1 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 115.98 122.90 -6.92 0.60 N 133 1 "C3'" B DT 19 ? ? "O3'" B DT 19 ? ? P B DT 20 ? ? 130.33 119.70 10.63 1.20 Y 134 1 "O5'" B DT 20 ? ? P B DT 20 ? ? OP2 B DT 20 ? ? 99.90 105.70 -5.80 0.90 N 135 1 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? 90.63 109.70 -19.07 2.50 N 136 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 110.18 106.80 3.38 0.50 N 137 1 C5 B DT 20 ? ? C6 B DT 20 ? ? N1 B DT 20 ? ? 119.43 123.70 -4.27 0.60 N 138 1 N3 B DT 20 ? ? C2 B DT 20 ? ? O2 B DT 20 ? ? 117.85 122.30 -4.45 0.60 N 139 1 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 114.42 119.00 -4.58 0.60 N 140 1 "C3'" B 5CM 21 ? ? "O3'" B 5CM 21 ? ? P B DG 22 ? ? 128.53 119.70 8.83 1.20 Y 141 1 OP1 B DG 22 ? ? P B DG 22 ? ? OP2 B DG 22 ? ? 109.70 119.60 -9.90 1.50 N 142 1 "O5'" B DG 22 ? ? "C5'" B DG 22 ? ? "C4'" B DG 22 ? ? 94.34 109.40 -15.06 0.80 N 143 1 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 100.46 104.50 -4.04 0.40 N 144 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 96.02 102.40 -6.38 0.80 N 145 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? "C2'" B DG 22 ? ? 96.39 105.90 -9.51 0.80 N 146 1 C6 B DG 22 ? ? N1 B DG 22 ? ? C2 B DG 22 ? ? 120.80 125.10 -4.30 0.60 N 147 1 N1 B DG 22 ? ? C2 B DG 22 ? ? N3 B DG 22 ? ? 128.13 123.90 4.23 0.60 N 148 1 C5 B DG 22 ? ? C6 B DG 22 ? ? N1 B DG 22 ? ? 115.81 111.50 4.31 0.50 N 149 1 C8 B DG 22 ? ? N9 B DG 22 ? ? C4 B DG 22 ? ? 103.49 106.40 -2.91 0.40 N 150 1 N9 B DG 22 ? ? C4 B DG 22 ? ? C5 B DG 22 ? ? 107.80 105.40 2.40 0.40 N 151 1 "O5'" B DC 23 ? ? P B DC 23 ? ? OP1 B DC 23 ? ? 118.84 110.70 8.14 1.20 N 152 1 "O5'" B DC 23 ? ? "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? 139.47 111.00 28.47 2.50 N 153 1 "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? 123.01 115.70 7.31 1.20 N 154 1 "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? "O4'" B DC 23 ? ? 96.34 109.30 -12.96 1.90 N 155 1 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 102.57 110.10 -7.53 1.00 N 156 1 "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? 96.29 102.20 -5.91 0.70 N 157 1 N1 B DC 23 ? ? "C1'" B DC 23 ? ? "C2'" B DC 23 ? ? 126.85 114.30 12.55 1.40 N 158 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 97.85 108.00 -10.15 0.70 N 159 1 C4 B DC 23 ? ? C5 B DC 23 ? ? C6 B DC 23 ? ? 114.15 117.40 -3.25 0.50 N 160 1 N1 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 115.29 118.90 -3.61 0.60 N 161 1 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 128.14 121.90 6.24 0.70 N 162 1 "O5'" B DG 24 ? ? P B DG 24 ? ? OP1 B DG 24 ? ? 98.46 105.70 -7.24 0.90 N 163 1 "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? 100.84 109.40 -8.56 0.80 N 164 1 P B DG 24 ? ? "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? 108.47 120.90 -12.43 1.60 N 165 1 "O4'" B DG 24 ? ? "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? 110.32 106.00 4.32 0.60 N 166 1 "C1'" B DG 24 ? ? "O4'" B DG 24 ? ? "C4'" B DG 24 ? ? 102.22 110.10 -7.88 1.00 N 167 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? "C2'" B DG 24 ? ? 112.63 106.80 5.83 0.50 N 168 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 102.06 108.00 -5.94 0.70 N 169 1 C6 B DG 24 ? ? N1 B DG 24 ? ? C2 B DG 24 ? ? 118.42 125.10 -6.68 0.60 N 170 1 N1 B DG 24 ? ? C2 B DG 24 ? ? N3 B DG 24 ? ? 127.68 123.90 3.78 0.60 N 171 1 C5 B DG 24 ? ? C6 B DG 24 ? ? N1 B DG 24 ? ? 116.49 111.50 4.99 0.50 N 172 1 N3 B DG 24 ? ? C2 B DG 24 ? ? N2 B DG 24 ? ? 115.65 119.90 -4.25 0.70 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 2 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.063 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 9 A 5CM 9 ? DC ? 2 B 5CM 9 B 5CM 21 ? DC ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 BRN C1 C Y N 38 BRN C2 C Y N 39 BRN C3 C Y N 40 BRN C4 C Y N 41 BRN C5 C Y N 42 BRN C6 C Y N 43 BRN C7 C N N 44 BRN NA N N N 45 BRN NB N N N 46 BRN N1 N N N 47 BRN N N N N 48 BRN "N1'" N N N 49 BRN "C1'" C Y N 50 BRN "C2'" C Y N 51 BRN "C3'" C Y N 52 BRN "C4'" C Y N 53 BRN "C5'" C Y N 54 BRN "C6'" C Y N 55 BRN "C7'" C N N 56 BRN "NA'" N N N 57 BRN "NB'" N N N 58 BRN H2 H N N 59 BRN H3 H N N 60 BRN H5 H N N 61 BRN H6 H N N 62 BRN HA H N N 63 BRN HB1 H N N 64 BRN HB2 H N N 65 BRN HN1 H N N 66 BRN "H2'" H N N 67 BRN "H3'" H N N 68 BRN "H5'" H N N 69 BRN "H6'" H N N 70 BRN "HA'" H N N 71 BRN "HB'1" H N N 72 BRN "HB'2" H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 HOH O O N N 217 HOH H1 H N N 218 HOH H2 H N N 219 MG MG MG N N 220 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 BRN C1 C2 doub Y N 39 BRN C1 C6 sing Y N 40 BRN C1 N1 sing N N 41 BRN C2 C3 sing Y N 42 BRN C2 H2 sing N N 43 BRN C3 C4 doub Y N 44 BRN C3 H3 sing N N 45 BRN C4 C5 sing Y N 46 BRN C4 C7 sing N N 47 BRN C5 C6 doub Y N 48 BRN C5 H5 sing N N 49 BRN C6 H6 sing N N 50 BRN C7 NA doub N N 51 BRN C7 NB sing N N 52 BRN NA HA sing N N 53 BRN NB HB1 sing N N 54 BRN NB HB2 sing N N 55 BRN N1 N sing N N 56 BRN N1 HN1 sing N N 57 BRN N "N1'" doub N E 58 BRN "N1'" "C1'" sing N N 59 BRN "C1'" "C2'" doub Y N 60 BRN "C1'" "C6'" sing Y N 61 BRN "C2'" "C3'" sing Y N 62 BRN "C2'" "H2'" sing N N 63 BRN "C3'" "C4'" doub Y N 64 BRN "C3'" "H3'" sing N N 65 BRN "C4'" "C5'" sing Y N 66 BRN "C4'" "C7'" sing N N 67 BRN "C5'" "C6'" doub Y N 68 BRN "C5'" "H5'" sing N N 69 BRN "C6'" "H6'" sing N N 70 BRN "C7'" "NA'" doub N N 71 BRN "C7'" "NB'" sing N N 72 BRN "NA'" "HA'" sing N N 73 BRN "NB'" "HB'1" sing N N 74 BRN "NB'" "HB'2" sing N N 75 DA OP3 P sing N N 76 DA OP3 HOP3 sing N N 77 DA P OP1 doub N N 78 DA P OP2 sing N N 79 DA P "O5'" sing N N 80 DA OP2 HOP2 sing N N 81 DA "O5'" "C5'" sing N N 82 DA "C5'" "C4'" sing N N 83 DA "C5'" "H5'" sing N N 84 DA "C5'" "H5''" sing N N 85 DA "C4'" "O4'" sing N N 86 DA "C4'" "C3'" sing N N 87 DA "C4'" "H4'" sing N N 88 DA "O4'" "C1'" sing N N 89 DA "C3'" "O3'" sing N N 90 DA "C3'" "C2'" sing N N 91 DA "C3'" "H3'" sing N N 92 DA "O3'" "HO3'" sing N N 93 DA "C2'" "C1'" sing N N 94 DA "C2'" "H2'" sing N N 95 DA "C2'" "H2''" sing N N 96 DA "C1'" N9 sing N N 97 DA "C1'" "H1'" sing N N 98 DA N9 C8 sing Y N 99 DA N9 C4 sing Y N 100 DA C8 N7 doub Y N 101 DA C8 H8 sing N N 102 DA N7 C5 sing Y N 103 DA C5 C6 sing Y N 104 DA C5 C4 doub Y N 105 DA C6 N6 sing N N 106 DA C6 N1 doub Y N 107 DA N6 H61 sing N N 108 DA N6 H62 sing N N 109 DA N1 C2 sing Y N 110 DA C2 N3 doub Y N 111 DA C2 H2 sing N N 112 DA N3 C4 sing Y N 113 DC OP3 P sing N N 114 DC OP3 HOP3 sing N N 115 DC P OP1 doub N N 116 DC P OP2 sing N N 117 DC P "O5'" sing N N 118 DC OP2 HOP2 sing N N 119 DC "O5'" "C5'" sing N N 120 DC "C5'" "C4'" sing N N 121 DC "C5'" "H5'" sing N N 122 DC "C5'" "H5''" sing N N 123 DC "C4'" "O4'" sing N N 124 DC "C4'" "C3'" sing N N 125 DC "C4'" "H4'" sing N N 126 DC "O4'" "C1'" sing N N 127 DC "C3'" "O3'" sing N N 128 DC "C3'" "C2'" sing N N 129 DC "C3'" "H3'" sing N N 130 DC "O3'" "HO3'" sing N N 131 DC "C2'" "C1'" sing N N 132 DC "C2'" "H2'" sing N N 133 DC "C2'" "H2''" sing N N 134 DC "C1'" N1 sing N N 135 DC "C1'" "H1'" sing N N 136 DC N1 C2 sing N N 137 DC N1 C6 sing N N 138 DC C2 O2 doub N N 139 DC C2 N3 sing N N 140 DC N3 C4 doub N N 141 DC C4 N4 sing N N 142 DC C4 C5 sing N N 143 DC N4 H41 sing N N 144 DC N4 H42 sing N N 145 DC C5 C6 doub N N 146 DC C5 H5 sing N N 147 DC C6 H6 sing N N 148 DG OP3 P sing N N 149 DG OP3 HOP3 sing N N 150 DG P OP1 doub N N 151 DG P OP2 sing N N 152 DG P "O5'" sing N N 153 DG OP2 HOP2 sing N N 154 DG "O5'" "C5'" sing N N 155 DG "C5'" "C4'" sing N N 156 DG "C5'" "H5'" sing N N 157 DG "C5'" "H5''" sing N N 158 DG "C4'" "O4'" sing N N 159 DG "C4'" "C3'" sing N N 160 DG "C4'" "H4'" sing N N 161 DG "O4'" "C1'" sing N N 162 DG "C3'" "O3'" sing N N 163 DG "C3'" "C2'" sing N N 164 DG "C3'" "H3'" sing N N 165 DG "O3'" "HO3'" sing N N 166 DG "C2'" "C1'" sing N N 167 DG "C2'" "H2'" sing N N 168 DG "C2'" "H2''" sing N N 169 DG "C1'" N9 sing N N 170 DG "C1'" "H1'" sing N N 171 DG N9 C8 sing Y N 172 DG N9 C4 sing Y N 173 DG C8 N7 doub Y N 174 DG C8 H8 sing N N 175 DG N7 C5 sing Y N 176 DG C5 C6 sing N N 177 DG C5 C4 doub Y N 178 DG C6 O6 doub N N 179 DG C6 N1 sing N N 180 DG N1 C2 sing N N 181 DG N1 H1 sing N N 182 DG C2 N2 sing N N 183 DG C2 N3 doub N N 184 DG N2 H21 sing N N 185 DG N2 H22 sing N N 186 DG N3 C4 sing N N 187 DT OP3 P sing N N 188 DT OP3 HOP3 sing N N 189 DT P OP1 doub N N 190 DT P OP2 sing N N 191 DT P "O5'" sing N N 192 DT OP2 HOP2 sing N N 193 DT "O5'" "C5'" sing N N 194 DT "C5'" "C4'" sing N N 195 DT "C5'" "H5'" sing N N 196 DT "C5'" "H5''" sing N N 197 DT "C4'" "O4'" sing N N 198 DT "C4'" "C3'" sing N N 199 DT "C4'" "H4'" sing N N 200 DT "O4'" "C1'" sing N N 201 DT "C3'" "O3'" sing N N 202 DT "C3'" "C2'" sing N N 203 DT "C3'" "H3'" sing N N 204 DT "O3'" "HO3'" sing N N 205 DT "C2'" "C1'" sing N N 206 DT "C2'" "H2'" sing N N 207 DT "C2'" "H2''" sing N N 208 DT "C1'" N1 sing N N 209 DT "C1'" "H1'" sing N N 210 DT N1 C2 sing N N 211 DT N1 C6 sing N N 212 DT C2 O2 doub N N 213 DT C2 N3 sing N N 214 DT N3 C4 sing N N 215 DT N3 H3 sing N N 216 DT C4 O4 doub N N 217 DT C4 C5 sing N N 218 DT C5 C7 sing N N 219 DT C5 C6 doub N N 220 DT C7 H71 sing N N 221 DT C7 H72 sing N N 222 DT C7 H73 sing N N 223 DT C6 H6 sing N N 224 HOH O H1 sing N N 225 HOH O H2 sing N N 226 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 268D 'double helix' 268D 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.203 -0.225 0.010 4.183 -16.890 1.389 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.439 -0.394 0.464 2.603 -15.194 3.556 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.186 -0.368 0.221 -1.197 -6.202 -3.161 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B 5CM 9 1_555 0.082 -0.131 -0.002 8.662 -11.527 -4.272 4 A_DG4:5CM21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.380 -0.063 -0.155 8.502 -17.275 1.853 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.389 -0.214 0.166 3.707 -13.446 1.761 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.041 -0.068 -0.154 5.803 -19.084 -0.103 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 0.099 -0.349 -0.013 -0.620 -18.285 7.539 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A 5CM 9 1_555 B DG 4 1_555 0.082 -0.506 -0.080 -7.392 -9.529 -4.527 9 A_5CM9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 0.127 -0.326 0.127 1.610 -6.407 0.003 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 -0.034 -0.458 0.379 -4.649 -18.946 -6.083 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.276 -0.392 -0.205 3.947 21.315 -5.308 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.002 0.312 3.283 -3.744 5.976 33.452 -0.426 -0.597 3.270 10.242 6.416 34.166 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.428 0.204 3.539 3.716 -4.908 39.782 0.900 -0.166 3.515 -7.161 -5.422 40.237 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B 5CM 9 1_555 -0.124 0.582 3.127 4.250 6.859 30.331 -0.180 1.009 3.134 12.825 -7.947 31.362 3 AA_DC3DG4:5CM21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B 5CM 9 1_555 A DA 5 1_555 B DT 8 1_555 0.078 -0.030 3.257 0.357 3.465 38.049 -0.480 -0.075 3.243 5.302 -0.545 38.202 4 AA_DG4DA5:DT205CM21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.034 -0.178 3.318 -3.464 3.842 36.913 -0.794 -0.517 3.267 6.032 5.437 37.261 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.259 -0.744 3.161 2.571 -0.717 29.965 -1.291 1.006 3.145 -1.383 -4.959 30.081 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.106 -0.258 3.351 0.638 1.426 34.705 -0.655 0.277 3.336 2.389 -1.069 34.739 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A 5CM 9 1_555 B DG 4 1_555 -0.324 -0.111 3.485 0.298 -1.288 42.140 -0.013 0.483 3.485 -1.791 -0.414 42.159 8 AA_DT85CM9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A 5CM 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.537 0.983 3.167 -3.048 5.300 30.248 0.830 -1.595 3.221 10.028 5.767 30.845 9 AA_5CM9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.212 0.482 3.601 -5.230 -11.780 38.489 2.155 1.103 3.444 -17.290 7.676 40.512 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.185 0.593 3.399 5.188 -14.486 36.877 2.604 -1.117 3.094 -21.773 -7.798 39.855 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 268D _atom_sites.fract_transf_matrix[1][1] 0.040414 _atom_sites.fract_transf_matrix[1][2] -0.000001 _atom_sites.fract_transf_matrix[1][3] -0.000001 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024880 _atom_sites.fract_transf_matrix[2][3] -0.000001 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015309 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_