data_28SP # _entry.id 28SP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 28SP pdb_000028sp 10.2210/pdb28sp/pdb RCSB RCSB000812 ? ? WWPDB D_1000000812 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-04-12 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2022-03-09 5 'Structure model' 2 1 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_y' 3 4 'Structure model' '_atom_site.Cartn_z' 4 4 'Structure model' '_atom_site.auth_atom_id' 5 4 'Structure model' '_atom_site.label_atom_id' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 28SP _pdbx_database_status.recvd_initial_deposition_date 1999-04-07 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schmitz, U.' 1 'James, T.L.' 2 'Lukavsky, P.' 3 'Walter, P.' 4 # _citation.id primary _citation.title 'Structure of the most conserved internal loop in SRP RNA.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 6 _citation.page_first 634 _citation.page_last 638 _citation.year 1999 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10404218 _citation.pdbx_database_id_DOI 10.1038/10683 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schmitz, U.' 1 ? primary 'James, T.L.' 2 ? primary 'Lukavsky, P.' 3 ? primary 'Walter, P.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'CONSERVED MOTIF IN SRP RNA' _entity.formula_weight 9126.535 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SRP DOMAIN IV' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SRP54 BINDING DOMAIN' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGUCAGGUCCGGAAGGAAGCAGCGCC _entity_poly.pdbx_seq_one_letter_code_can GGCGUCAGGUCCGGAAGGAAGCAGCGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 U n 1 6 C n 1 7 A n 1 8 G n 1 9 G n 1 10 U n 1 11 C n 1 12 C n 1 13 G n 1 14 G n 1 15 A n 1 16 A n 1 17 G n 1 18 G n 1 19 A n 1 20 A n 1 21 G n 1 22 C n 1 23 A n 1 24 G n 1 25 C n 1 26 G n 1 27 C n 1 28 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'PREPARED BY IN VITRO TRANSCRIPTION WITH T7 RNA POLYMERASE' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n A 1 8 G 8 8 8 G G A . n A 1 9 G 9 9 9 G G A . n A 1 10 U 10 10 10 U U A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 A 19 19 19 A A A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 C 28 28 28 C C A . n # _cell.entry_id 28SP _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 28SP _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 28SP _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 28SP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 28SP _struct.title 'NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 28SP _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'NMR OF RNA, SRP, 4.5S RNA, COMPLETE RELAXATION MATRIX ANALYSIS, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 28SP _struct_ref.pdbx_db_accession 28SP _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 28SP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 28 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 28SP _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 28 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 28 N3 ? ? A G 1 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 28 O2 ? ? A G 1 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 28 N4 ? ? A G 1 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 2 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 2 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 2 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 3 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 3 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 3 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 4 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 4 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 4 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 24 O6 ? ? A U 5 A G 24 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 24 N1 ? ? A U 5 A G 24 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A G 8 N7 ? ? ? 1_555 A G 21 N2 ? ? A G 8 A G 21 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog16 hydrog ? ? A G 9 N1 ? ? ? 1_555 A A 20 N1 ? ? A G 9 A A 20 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog17 hydrog ? ? A G 9 O6 ? ? ? 1_555 A A 20 N6 ? ? A G 9 A A 20 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog18 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 19 N1 ? ? A U 10 A A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 19 N6 ? ? A U 10 A A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 11 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 11 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 11 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 12 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 12 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 12 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 13 N2 ? ? ? 1_555 A A 16 N7 ? ? A G 13 A A 16 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO2'" A U 5 ? ? OP1 A C 6 ? ? 1.38 2 1 "HO2'" A A 16 ? ? OP1 A G 17 ? ? 1.41 3 1 O6 A G 8 ? ? "HO2'" A G 21 ? ? 1.44 4 1 "HO2'" A G 1 ? ? OP1 A G 2 ? ? 1.50 5 2 OP2 A C 27 ? ? "HO3'" A C 28 ? ? 1.30 6 2 "HO2'" A A 16 ? ? OP1 A G 17 ? ? 1.41 7 2 "HO2'" A G 21 ? ? OP1 A C 22 ? ? 1.42 8 3 "HO2'" A A 15 ? ? OP1 A A 16 ? ? 1.33 9 3 OP2 A C 27 ? ? "HO3'" A C 28 ? ? 1.37 10 3 "HO2'" A U 5 ? ? OP1 A C 6 ? ? 1.38 11 3 "HO5'" A G 1 ? ? OP2 A G 2 ? ? 1.39 12 3 "HO2'" A G 21 ? ? OP1 A C 22 ? ? 1.42 13 3 "HO2'" A C 22 ? ? OP2 A A 23 ? ? 1.51 14 3 "HO2'" A C 27 ? ? OP1 A C 28 ? ? 1.53 15 4 "HO2'" A U 5 ? ? OP1 A C 6 ? ? 1.36 16 4 "HO5'" A G 1 ? ? OP2 A G 2 ? ? 1.38 17 4 "HO2'" A A 23 ? ? OP1 A G 24 ? ? 1.40 18 4 O6 A G 8 ? ? "HO2'" A G 21 ? ? 1.48 19 4 "HO2'" A C 22 ? ? OP2 A A 23 ? ? 1.51 20 5 "HO2'" A U 5 ? ? OP1 A C 6 ? ? 1.36 21 5 "HO2'" A A 7 ? ? OP1 A G 8 ? ? 1.40 22 5 "HO2'" A A 23 ? ? OP1 A G 24 ? ? 1.41 23 5 "HO2'" A A 16 ? ? OP1 A G 17 ? ? 1.42 24 5 O6 A G 8 ? ? "HO2'" A G 21 ? ? 1.43 25 5 "HO2'" A C 22 ? ? OP2 A A 23 ? ? 1.53 26 6 "HO2'" A U 5 ? ? OP1 A C 6 ? ? 1.36 27 6 "HO5'" A G 1 ? ? OP2 A G 2 ? ? 1.37 28 6 "HO2'" A A 7 ? ? OP1 A G 8 ? ? 1.41 29 6 "HO2'" A G 21 ? ? OP1 A C 22 ? ? 1.42 30 6 "HO2'" A G 9 ? ? "O5'" A U 10 ? ? 1.56 31 6 "HO2'" A A 15 ? ? "O5'" A A 16 ? ? 1.59 32 7 "HO2'" A A 19 ? ? OP1 A A 20 ? ? 1.33 33 7 "HO2'" A U 5 ? ? OP1 A C 6 ? ? 1.36 34 7 "HO2'" A A 7 ? ? OP1 A G 8 ? ? 1.41 35 7 "HO2'" A G 21 ? ? OP1 A C 22 ? ? 1.42 36 7 "HO2'" A A 15 ? ? "O5'" A A 16 ? ? 1.42 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.04 108.50 4.54 0.70 N 2 1 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 113.57 108.50 5.07 0.70 N 3 1 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 114.07 108.50 5.57 0.70 N 4 1 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.03 117.70 3.33 0.50 N 5 1 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 114.95 118.60 -3.65 0.60 N 6 1 N9 A G 8 ? ? "C1'" A G 8 ? ? "C2'" A G 8 ? ? 99.74 112.00 -12.26 1.10 N 7 1 N7 A G 17 ? ? C8 A G 17 ? ? N9 A G 17 ? ? 116.75 113.10 3.65 0.50 N 8 1 "O4'" A A 19 ? ? "C1'" A A 19 ? ? N9 A A 19 ? ? 115.26 108.50 6.76 0.70 N 9 1 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 120.94 117.70 3.24 0.50 N 10 1 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.86 118.60 -3.74 0.60 N 11 1 "C4'" A G 21 ? ? "C3'" A G 21 ? ? "C2'" A G 21 ? ? 96.20 102.60 -6.40 1.00 N 12 1 "C3'" A G 21 ? ? "C2'" A G 21 ? ? "C1'" A G 21 ? ? 107.64 101.50 6.14 0.80 N 13 1 "O4'" A G 21 ? ? "C1'" A G 21 ? ? N9 A G 21 ? ? 120.79 108.50 12.29 0.70 N 14 1 "C5'" A A 23 ? ? "C4'" A A 23 ? ? "O4'" A A 23 ? ? 116.29 109.80 6.49 0.90 N 15 1 "O4'" A A 23 ? ? "C1'" A A 23 ? ? N9 A A 23 ? ? 114.64 108.50 6.14 0.70 N 16 1 C5 A A 23 ? ? C6 A A 23 ? ? N1 A A 23 ? ? 121.31 117.70 3.61 0.50 N 17 1 N1 A A 23 ? ? C6 A A 23 ? ? N6 A A 23 ? ? 113.06 118.60 -5.54 0.60 N 18 1 "O4'" A C 25 ? ? "C1'" A C 25 ? ? N1 A C 25 ? ? 115.08 108.50 6.58 0.70 N 19 1 "O4'" A G 26 ? ? "C1'" A G 26 ? ? N9 A G 26 ? ? 112.70 108.50 4.20 0.70 N 20 1 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 114.36 108.50 5.86 0.70 N 21 1 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 117.40 121.90 -4.50 0.70 N 22 1 "O4'" A C 28 ? ? "C1'" A C 28 ? ? N1 A C 28 ? ? 112.93 108.50 4.43 0.70 N 23 2 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 116.04 108.50 7.54 0.70 N 24 2 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.04 108.50 4.54 0.70 N 25 2 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 113.84 108.50 5.34 0.70 N 26 2 "C5'" A U 5 ? ? "C4'" A U 5 ? ? "O4'" A U 5 ? ? 116.00 109.80 6.20 0.90 N 27 2 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.10 117.70 3.40 0.50 N 28 2 N9 A G 8 ? ? "C1'" A G 8 ? ? "C2'" A G 8 ? ? 99.58 112.00 -12.42 1.10 N 29 2 "C5'" A G 14 ? ? "C4'" A G 14 ? ? "O4'" A G 14 ? ? 101.43 109.10 -7.67 1.20 N 30 2 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 114.95 118.60 -3.65 0.60 N 31 2 N7 A A 16 ? ? C8 A A 16 ? ? N9 A A 16 ? ? 116.81 113.80 3.01 0.50 N 32 2 N7 A G 17 ? ? C8 A G 17 ? ? N9 A G 17 ? ? 116.67 113.10 3.57 0.50 N 33 2 "O4'" A A 19 ? ? "C1'" A A 19 ? ? N9 A A 19 ? ? 113.89 108.50 5.39 0.70 N 34 2 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.23 117.70 3.53 0.50 N 35 2 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.65 118.60 -3.95 0.60 N 36 2 N9 A G 21 ? ? "C1'" A G 21 ? ? "C2'" A G 21 ? ? 121.92 114.00 7.92 1.30 N 37 2 "C5'" A A 23 ? ? "C4'" A A 23 ? ? "C3'" A A 23 ? ? 105.73 115.20 -9.47 1.40 N 38 2 "C5'" A A 23 ? ? "C4'" A A 23 ? ? "O4'" A A 23 ? ? 118.53 109.80 8.73 0.90 N 39 2 N9 A A 23 ? ? "C1'" A A 23 ? ? "C2'" A A 23 ? ? 122.35 114.00 8.35 1.30 N 40 2 C5 A A 23 ? ? C6 A A 23 ? ? N1 A A 23 ? ? 120.92 117.70 3.22 0.50 N 41 2 C8 A A 23 ? ? N9 A A 23 ? ? C4 A A 23 ? ? 103.31 105.80 -2.49 0.40 N 42 2 "O4'" A C 25 ? ? "C1'" A C 25 ? ? N1 A C 25 ? ? 113.17 108.50 4.67 0.70 N 43 2 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 114.05 108.50 5.55 0.70 N 44 2 "O4'" A C 28 ? ? "C1'" A C 28 ? ? N1 A C 28 ? ? 113.50 108.50 5.00 0.70 N 45 3 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 115.42 108.50 6.92 0.70 N 46 3 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 114.24 108.50 5.74 0.70 N 47 3 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 113.91 108.50 5.41 0.70 N 48 3 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 114.86 108.50 6.36 0.70 N 49 3 "C5'" A A 7 ? ? "C4'" A A 7 ? ? "O4'" A A 7 ? ? 116.82 109.80 7.02 0.90 N 50 3 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.13 117.70 3.43 0.50 N 51 3 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 114.61 118.60 -3.99 0.60 N 52 3 N9 A G 8 ? ? "C1'" A G 8 ? ? "C2'" A G 8 ? ? 100.14 112.00 -11.86 1.10 N 53 3 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.76 108.50 4.26 0.70 N 54 3 "C5'" A G 14 ? ? "C4'" A G 14 ? ? "O4'" A G 14 ? ? 100.23 109.10 -8.87 1.20 N 55 3 N7 A G 17 ? ? C8 A G 17 ? ? N9 A G 17 ? ? 116.37 113.10 3.27 0.50 N 56 3 "O4'" A A 19 ? ? "C1'" A A 19 ? ? N9 A A 19 ? ? 114.64 108.50 6.14 0.70 N 57 3 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.26 117.70 3.56 0.50 N 58 3 "O4'" A A 20 ? ? "C1'" A A 20 ? ? N9 A A 20 ? ? 115.41 108.50 6.91 0.70 N 59 3 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.55 118.60 -4.05 0.60 N 60 3 "O4'" A G 21 ? ? "C1'" A G 21 ? ? N9 A G 21 ? ? 112.72 108.50 4.22 0.70 N 61 3 "C5'" A A 23 ? ? "C4'" A A 23 ? ? "C3'" A A 23 ? ? 105.94 115.20 -9.26 1.40 N 62 3 "C5'" A A 23 ? ? "C4'" A A 23 ? ? "O4'" A A 23 ? ? 116.64 109.80 6.84 0.90 N 63 3 "O4'" A A 23 ? ? "C1'" A A 23 ? ? N9 A A 23 ? ? 116.24 108.50 7.74 0.70 N 64 3 C5 A A 23 ? ? C6 A A 23 ? ? N1 A A 23 ? ? 121.88 117.70 4.18 0.50 N 65 3 N1 A A 23 ? ? C6 A A 23 ? ? N6 A A 23 ? ? 112.90 118.60 -5.70 0.60 N 66 3 "O4'" A C 25 ? ? "C1'" A C 25 ? ? N1 A C 25 ? ? 116.69 108.50 8.19 0.70 N 67 3 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 115.90 108.50 7.40 0.70 N 68 3 "C5'" A C 28 ? ? "C4'" A C 28 ? ? "O4'" A C 28 ? ? 115.71 109.80 5.91 0.90 N 69 3 "C1'" A C 28 ? ? "O4'" A C 28 ? ? "C4'" A C 28 ? ? 105.19 109.70 -4.51 0.70 N 70 3 "O4'" A C 28 ? ? "C1'" A C 28 ? ? N1 A C 28 ? ? 120.17 108.50 11.67 0.70 N 71 3 N1 A C 28 ? ? C2 A C 28 ? ? O2 A C 28 ? ? 123.56 118.90 4.66 0.60 N 72 3 N3 A C 28 ? ? C2 A C 28 ? ? O2 A C 28 ? ? 116.49 121.90 -5.41 0.70 N 73 4 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 114.24 108.50 5.74 0.70 N 74 4 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.93 108.50 5.43 0.70 N 75 4 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 114.95 108.50 6.45 0.70 N 76 4 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 116.64 108.50 8.14 0.70 N 77 4 N3 A C 6 ? ? C4 A C 6 ? ? N4 A C 6 ? ? 113.47 118.00 -4.53 0.70 N 78 4 "C5'" A A 7 ? ? "C4'" A A 7 ? ? "O4'" A A 7 ? ? 115.84 109.80 6.04 0.90 N 79 4 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.27 117.70 3.57 0.50 N 80 4 "C5'" A G 8 ? ? "C4'" A G 8 ? ? "O4'" A G 8 ? ? 115.57 109.80 5.77 0.90 N 81 4 N9 A G 8 ? ? "C1'" A G 8 ? ? "C2'" A G 8 ? ? 101.73 112.00 -10.27 1.10 N 82 4 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 114.13 108.50 5.63 0.70 N 83 4 N1 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 116.27 119.90 -3.63 0.60 N 84 4 "C5'" A G 14 ? ? "C4'" A G 14 ? ? "O4'" A G 14 ? ? 101.16 109.10 -7.94 1.20 N 85 4 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 114.34 118.60 -4.26 0.60 N 86 4 "O4'" A A 19 ? ? "C1'" A A 19 ? ? N9 A A 19 ? ? 115.41 108.50 6.91 0.70 N 87 4 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.12 117.70 3.42 0.50 N 88 4 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.55 118.60 -4.05 0.60 N 89 4 N9 A G 21 ? ? "C1'" A G 21 ? ? "C2'" A G 21 ? ? 122.51 114.00 8.51 1.30 N 90 4 "O4'" A G 21 ? ? "C1'" A G 21 ? ? N9 A G 21 ? ? 114.67 108.50 6.17 0.70 N 91 4 "C5'" A A 23 ? ? "C4'" A A 23 ? ? "O4'" A A 23 ? ? 115.85 109.80 6.05 0.90 N 92 4 "O4'" A A 23 ? ? "C1'" A A 23 ? ? N9 A A 23 ? ? 114.97 108.50 6.47 0.70 N 93 4 C5 A A 23 ? ? C6 A A 23 ? ? N1 A A 23 ? ? 121.19 117.70 3.49 0.50 N 94 4 C8 A A 23 ? ? N9 A A 23 ? ? C4 A A 23 ? ? 103.35 105.80 -2.45 0.40 N 95 4 N1 A A 23 ? ? C6 A A 23 ? ? N6 A A 23 ? ? 112.83 118.60 -5.77 0.60 N 96 4 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 116.04 108.50 7.54 0.70 N 97 4 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 117.70 121.90 -4.20 0.70 N 98 5 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 115.78 108.50 7.28 0.70 N 99 5 N1 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 123.71 118.90 4.81 0.60 N 100 5 N3 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 117.21 121.90 -4.69 0.70 N 101 5 N3 A C 3 ? ? C4 A C 3 ? ? N4 A C 3 ? ? 110.06 118.00 -7.94 0.70 N 102 5 C5 A C 3 ? ? C4 A C 3 ? ? N4 A C 3 ? ? 124.44 120.20 4.24 0.70 N 103 5 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 114.80 108.50 6.30 0.70 N 104 5 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 115.77 108.50 7.27 0.70 N 105 5 N3 A C 6 ? ? C4 A C 6 ? ? N4 A C 6 ? ? 113.16 118.00 -4.84 0.70 N 106 5 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 114.26 118.60 -4.34 0.60 N 107 5 N9 A G 8 ? ? "C1'" A G 8 ? ? "C2'" A G 8 ? ? 99.52 112.00 -12.48 1.10 N 108 5 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 114.31 108.50 5.81 0.70 N 109 5 "C5'" A G 14 ? ? "C4'" A G 14 ? ? "O4'" A G 14 ? ? 101.58 109.10 -7.52 1.20 N 110 5 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 114.79 118.60 -3.81 0.60 N 111 5 N7 A A 16 ? ? C8 A A 16 ? ? N9 A A 16 ? ? 116.89 113.80 3.09 0.50 N 112 5 N7 A G 17 ? ? C8 A G 17 ? ? N9 A G 17 ? ? 116.74 113.10 3.64 0.50 N 113 5 "O4'" A A 19 ? ? "C1'" A A 19 ? ? N9 A A 19 ? ? 114.91 108.50 6.41 0.70 N 114 5 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.20 117.70 3.50 0.50 N 115 5 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.90 118.60 -3.70 0.60 N 116 5 "C3'" A G 21 ? ? "C2'" A G 21 ? ? "C1'" A G 21 ? ? 106.95 101.50 5.45 0.80 N 117 5 "O4'" A G 21 ? ? "C1'" A G 21 ? ? N9 A G 21 ? ? 117.05 108.50 8.55 0.70 N 118 5 "O4'" A A 23 ? ? "C1'" A A 23 ? ? N9 A A 23 ? ? 113.81 108.50 5.31 0.70 N 119 5 C5 A A 23 ? ? C6 A A 23 ? ? N1 A A 23 ? ? 120.88 117.70 3.18 0.50 N 120 5 N1 A A 23 ? ? C6 A A 23 ? ? N6 A A 23 ? ? 114.58 118.60 -4.02 0.60 N 121 5 N3 A C 25 ? ? C2 A C 25 ? ? O2 A C 25 ? ? 117.55 121.90 -4.35 0.70 N 122 5 "C5'" A G 26 ? ? "C4'" A G 26 ? ? "O4'" A G 26 ? ? 116.65 109.80 6.85 0.90 N 123 5 "C1'" A G 26 ? ? "O4'" A G 26 ? ? "C4'" A G 26 ? ? 103.80 109.70 -5.90 0.70 N 124 5 "O4'" A G 26 ? ? "C1'" A G 26 ? ? N9 A G 26 ? ? 119.87 108.50 11.37 0.70 N 125 5 C8 A G 26 ? ? N9 A G 26 ? ? C4 A G 26 ? ? 102.74 106.40 -3.66 0.40 N 126 5 "C5'" A C 27 ? ? "C4'" A C 27 ? ? "O4'" A C 27 ? ? 118.72 109.80 8.92 0.90 N 127 5 "C1'" A C 27 ? ? "O4'" A C 27 ? ? "C4'" A C 27 ? ? 104.59 109.70 -5.11 0.70 N 128 5 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 121.58 108.50 13.08 0.70 N 129 5 N1 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 122.64 118.90 3.74 0.60 N 130 5 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 117.16 121.90 -4.74 0.70 N 131 5 "C1'" A C 28 ? ? "O4'" A C 28 ? ? "C4'" A C 28 ? ? 103.25 109.70 -6.45 0.70 N 132 5 "O4'" A C 28 ? ? "C1'" A C 28 ? ? N1 A C 28 ? ? 116.70 108.50 8.20 0.70 N 133 5 N3 A C 28 ? ? C2 A C 28 ? ? O2 A C 28 ? ? 117.58 121.90 -4.32 0.70 N 134 6 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 114.54 108.50 6.04 0.70 N 135 6 C6 A C 3 ? ? N1 A C 3 ? ? C2 A C 3 ? ? 116.58 120.30 -3.72 0.40 N 136 6 N1 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 123.83 118.90 4.93 0.60 N 137 6 C6 A C 3 ? ? N1 A C 3 ? ? "C1'" A C 3 ? ? 111.49 120.80 -9.31 1.20 N 138 6 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 113.26 108.50 4.76 0.70 N 139 6 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.11 117.70 3.41 0.50 N 140 6 N9 A G 8 ? ? "C1'" A G 8 ? ? "C2'" A G 8 ? ? 99.26 112.00 -12.74 1.10 N 141 6 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 113.25 108.50 4.75 0.70 N 142 6 "C1'" A C 12 ? ? "O4'" A C 12 ? ? "C4'" A C 12 ? ? 102.33 109.70 -7.37 0.70 N 143 6 "C3'" A C 12 ? ? "C2'" A C 12 ? ? "C1'" A C 12 ? ? 89.73 101.30 -11.57 0.70 N 144 6 N1 A C 12 ? ? "C1'" A C 12 ? ? "C2'" A C 12 ? ? 125.65 114.00 11.65 1.30 N 145 6 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 115.02 108.50 6.52 0.70 N 146 6 C6 A C 12 ? ? N1 A C 12 ? ? "C1'" A C 12 ? ? 109.57 120.80 -11.23 1.20 N 147 6 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 113.31 108.50 4.81 0.70 N 148 6 "C3'" A G 14 ? ? "C2'" A G 14 ? ? "C1'" A G 14 ? ? 106.53 101.50 5.03 0.80 N 149 6 "O4'" A G 14 ? ? "C1'" A G 14 ? ? N9 A G 14 ? ? 115.10 108.50 6.60 0.70 N 150 6 "C1'" A A 16 ? ? "O4'" A A 16 ? ? "C4'" A A 16 ? ? 105.09 109.70 -4.61 0.70 N 151 6 "C3'" A A 16 ? ? "C2'" A A 16 ? ? "C1'" A A 16 ? ? 93.67 101.30 -7.63 0.70 N 152 6 N9 A A 16 ? ? "C1'" A A 16 ? ? "C2'" A A 16 ? ? 125.47 114.00 11.47 1.30 N 153 6 "O4'" A A 16 ? ? "C1'" A A 16 ? ? N9 A A 16 ? ? 121.12 108.50 12.62 0.70 N 154 6 N7 A A 16 ? ? C8 A A 16 ? ? N9 A A 16 ? ? 116.93 113.80 3.13 0.50 N 155 6 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 120.43 108.50 11.93 0.70 N 156 6 "C3'" A G 17 ? ? "C2'" A G 17 ? ? "O2'" A G 17 ? ? 94.64 113.30 -18.66 2.90 N 157 6 "O4'" A A 19 ? ? "C1'" A A 19 ? ? N9 A A 19 ? ? 113.62 108.50 5.12 0.70 N 158 6 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.14 117.70 3.44 0.50 N 159 6 "O4'" A A 20 ? ? "C1'" A A 20 ? ? N9 A A 20 ? ? 114.25 108.50 5.75 0.70 N 160 6 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.83 118.60 -3.77 0.60 N 161 6 "O4'" A G 21 ? ? "C1'" A G 21 ? ? N9 A G 21 ? ? 112.72 108.50 4.22 0.70 N 162 6 N3 A G 21 ? ? C2 A G 21 ? ? N2 A G 21 ? ? 115.29 119.90 -4.61 0.70 N 163 6 "C5'" A A 23 ? ? "C4'" A A 23 ? ? "O4'" A A 23 ? ? 115.77 109.80 5.97 0.90 N 164 6 "O4'" A A 23 ? ? "C1'" A A 23 ? ? N9 A A 23 ? ? 115.10 108.50 6.60 0.70 N 165 6 C5 A A 23 ? ? C6 A A 23 ? ? N1 A A 23 ? ? 121.43 117.70 3.73 0.50 N 166 6 N1 A A 23 ? ? C6 A A 23 ? ? N6 A A 23 ? ? 113.01 118.60 -5.59 0.60 N 167 6 "O4'" A C 25 ? ? "C1'" A C 25 ? ? N1 A C 25 ? ? 114.69 108.50 6.19 0.70 N 168 6 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 114.33 108.50 5.83 0.70 N 169 6 N1 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 123.10 118.90 4.20 0.60 N 170 6 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 116.89 121.90 -5.01 0.70 N 171 7 "C1'" A G 1 ? ? "O4'" A G 1 ? ? "C4'" A G 1 ? ? 105.34 109.70 -4.36 0.70 N 172 7 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 113.97 108.50 5.47 0.70 N 173 7 N1 A G 1 ? ? C6 A G 1 ? ? O6 A G 1 ? ? 116.17 119.90 -3.73 0.60 N 174 7 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 115.14 108.50 6.64 0.70 N 175 7 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.70 108.50 5.20 0.70 N 176 7 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 114.44 108.50 5.94 0.70 N 177 7 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 117.50 108.50 9.00 0.70 N 178 7 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.39 117.70 3.69 0.50 N 179 7 N9 A G 8 ? ? "C1'" A G 8 ? ? "C2'" A G 8 ? ? 101.67 112.00 -10.33 1.10 N 180 7 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 113.24 108.50 4.74 0.70 N 181 7 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 113.83 108.50 5.33 0.70 N 182 7 "O4'" A G 14 ? ? "C1'" A G 14 ? ? N9 A G 14 ? ? 113.97 108.50 5.47 0.70 N 183 7 N9 A A 15 ? ? "C1'" A A 15 ? ? "C2'" A A 15 ? ? 123.67 114.00 9.67 1.30 N 184 7 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.40 117.00 -3.60 0.50 N 185 7 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 121.39 117.70 3.69 0.50 N 186 7 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 112.02 118.60 -6.58 0.60 N 187 7 "C3'" A A 15 ? ? "O3'" A A 15 ? ? P A A 16 ? ? 127.42 119.70 7.72 1.20 Y 188 7 "C3'" A A 16 ? ? "C2'" A A 16 ? ? "C1'" A A 16 ? ? 94.25 101.30 -7.05 0.70 N 189 7 "O4'" A A 16 ? ? "C1'" A A 16 ? ? N9 A A 16 ? ? 120.68 108.50 12.18 0.70 N 190 7 C5 A A 16 ? ? N7 A A 16 ? ? C8 A A 16 ? ? 100.76 103.90 -3.14 0.50 N 191 7 N7 A A 16 ? ? C8 A A 16 ? ? N9 A A 16 ? ? 116.96 113.80 3.16 0.50 N 192 7 "O4'" A A 19 ? ? "C1'" A A 19 ? ? N9 A A 19 ? ? 114.22 108.50 5.72 0.70 N 193 7 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 120.87 117.70 3.17 0.50 N 194 7 N9 A G 21 ? ? "C1'" A G 21 ? ? "C2'" A G 21 ? ? 122.45 114.00 8.45 1.30 N 195 7 "O4'" A G 21 ? ? "C1'" A G 21 ? ? N9 A G 21 ? ? 112.85 108.50 4.35 0.70 N 196 7 "C5'" A A 23 ? ? "C4'" A A 23 ? ? "O4'" A A 23 ? ? 115.68 109.80 5.88 0.90 N 197 7 "O4'" A A 23 ? ? "C1'" A A 23 ? ? N9 A A 23 ? ? 115.40 108.50 6.90 0.70 N 198 7 C5 A A 23 ? ? C6 A A 23 ? ? N1 A A 23 ? ? 121.23 117.70 3.53 0.50 N 199 7 N1 A A 23 ? ? C6 A A 23 ? ? N6 A A 23 ? ? 113.02 118.60 -5.58 0.60 N 200 7 "O4'" A C 25 ? ? "C1'" A C 25 ? ? N1 A C 25 ? ? 114.94 108.50 6.44 0.70 N 201 7 "O4'" A G 26 ? ? "C1'" A G 26 ? ? N9 A G 26 ? ? 113.71 108.50 5.21 0.70 N 202 7 "O4'" A C 27 ? ? "C1'" A C 27 ? ? N1 A C 27 ? ? 116.08 108.50 7.58 0.70 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 6 "C1'" ? A C 12 ? 'WRONG HAND' . 2 6 "C1'" ? A A 16 ? 'WRONG HAND' . 3 6 "C2'" ? A G 17 ? 'WRONG HAND' . 4 7 "C1'" ? A G 14 ? 'WRONG HAND' . 5 7 "C1'" ? A A 16 ? 'WRONG HAND' . # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 2 ? ? 0.102 'SIDE CHAIN' 2 1 C A 6 ? ? 0.208 'SIDE CHAIN' 3 1 G A 8 ? ? 0.062 'SIDE CHAIN' 4 1 U A 10 ? ? 0.112 'SIDE CHAIN' 5 1 C A 11 ? ? 0.093 'SIDE CHAIN' 6 1 G A 13 ? ? 0.074 'SIDE CHAIN' 7 1 G A 14 ? ? 0.117 'SIDE CHAIN' 8 1 A A 15 ? ? 0.136 'SIDE CHAIN' 9 1 G A 21 ? ? 0.067 'SIDE CHAIN' 10 1 C A 22 ? ? 0.125 'SIDE CHAIN' 11 1 A A 23 ? ? 0.075 'SIDE CHAIN' 12 2 G A 2 ? ? 0.102 'SIDE CHAIN' 13 2 U A 5 ? ? 0.067 'SIDE CHAIN' 14 2 G A 8 ? ? 0.088 'SIDE CHAIN' 15 2 U A 10 ? ? 0.107 'SIDE CHAIN' 16 2 C A 11 ? ? 0.099 'SIDE CHAIN' 17 2 G A 13 ? ? 0.070 'SIDE CHAIN' 18 2 G A 14 ? ? 0.108 'SIDE CHAIN' 19 2 A A 15 ? ? 0.134 'SIDE CHAIN' 20 2 G A 21 ? ? 0.171 'SIDE CHAIN' 21 2 C A 22 ? ? 0.148 'SIDE CHAIN' 22 2 A A 23 ? ? 0.132 'SIDE CHAIN' 23 3 G A 1 ? ? 0.104 'SIDE CHAIN' 24 3 G A 2 ? ? 0.142 'SIDE CHAIN' 25 3 U A 5 ? ? 0.120 'SIDE CHAIN' 26 3 C A 6 ? ? 0.162 'SIDE CHAIN' 27 3 U A 10 ? ? 0.124 'SIDE CHAIN' 28 3 C A 11 ? ? 0.093 'SIDE CHAIN' 29 3 G A 13 ? ? 0.085 'SIDE CHAIN' 30 3 G A 14 ? ? 0.116 'SIDE CHAIN' 31 3 A A 15 ? ? 0.134 'SIDE CHAIN' 32 3 G A 21 ? ? 0.126 'SIDE CHAIN' 33 3 C A 22 ? ? 0.127 'SIDE CHAIN' 34 3 A A 23 ? ? 0.103 'SIDE CHAIN' 35 3 G A 24 ? ? 0.068 'SIDE CHAIN' 36 3 G A 26 ? ? 0.060 'SIDE CHAIN' 37 4 G A 1 ? ? 0.111 'SIDE CHAIN' 38 4 G A 2 ? ? 0.116 'SIDE CHAIN' 39 4 U A 5 ? ? 0.110 'SIDE CHAIN' 40 4 C A 6 ? ? 0.172 'SIDE CHAIN' 41 4 G A 8 ? ? 0.067 'SIDE CHAIN' 42 4 U A 10 ? ? 0.110 'SIDE CHAIN' 43 4 C A 11 ? ? 0.086 'SIDE CHAIN' 44 4 G A 13 ? ? 0.090 'SIDE CHAIN' 45 4 G A 14 ? ? 0.093 'SIDE CHAIN' 46 4 A A 15 ? ? 0.127 'SIDE CHAIN' 47 4 A A 16 ? ? 0.075 'SIDE CHAIN' 48 4 A A 19 ? ? 0.076 'SIDE CHAIN' 49 4 G A 21 ? ? 0.131 'SIDE CHAIN' 50 4 C A 22 ? ? 0.127 'SIDE CHAIN' 51 5 G A 2 ? ? 0.196 'SIDE CHAIN' 52 5 C A 3 ? ? 0.125 'SIDE CHAIN' 53 5 U A 5 ? ? 0.122 'SIDE CHAIN' 54 5 C A 6 ? ? 0.144 'SIDE CHAIN' 55 5 G A 8 ? ? 0.097 'SIDE CHAIN' 56 5 U A 10 ? ? 0.103 'SIDE CHAIN' 57 5 C A 11 ? ? 0.082 'SIDE CHAIN' 58 5 G A 13 ? ? 0.075 'SIDE CHAIN' 59 5 G A 14 ? ? 0.106 'SIDE CHAIN' 60 5 A A 15 ? ? 0.132 'SIDE CHAIN' 61 5 A A 19 ? ? 0.056 'SIDE CHAIN' 62 5 G A 21 ? ? 0.112 'SIDE CHAIN' 63 5 C A 22 ? ? 0.090 'SIDE CHAIN' 64 5 G A 26 ? ? 0.391 'SIDE CHAIN' 65 5 C A 28 ? ? 0.076 'SIDE CHAIN' 66 6 G A 1 ? ? 0.113 'SIDE CHAIN' 67 6 G A 2 ? ? 0.180 'SIDE CHAIN' 68 6 C A 3 ? ? 0.484 'SIDE CHAIN' 69 6 U A 5 ? ? 0.083 'SIDE CHAIN' 70 6 C A 6 ? ? 0.180 'SIDE CHAIN' 71 6 G A 8 ? ? 0.087 'SIDE CHAIN' 72 6 G A 9 ? ? 0.067 'SIDE CHAIN' 73 6 U A 10 ? ? 0.087 'SIDE CHAIN' 74 6 C A 11 ? ? 0.093 'SIDE CHAIN' 75 6 C A 12 ? ? 0.161 'SIDE CHAIN' 76 6 G A 13 ? ? 0.089 'SIDE CHAIN' 77 6 G A 14 ? ? 0.108 'SIDE CHAIN' 78 6 A A 15 ? ? 0.122 'SIDE CHAIN' 79 6 A A 16 ? ? 0.090 'SIDE CHAIN' 80 6 G A 17 ? ? 0.123 'SIDE CHAIN' 81 6 G A 21 ? ? 0.182 'SIDE CHAIN' 82 6 C A 22 ? ? 0.139 'SIDE CHAIN' 83 6 A A 23 ? ? 0.089 'SIDE CHAIN' 84 6 G A 24 ? ? 0.066 'SIDE CHAIN' 85 6 G A 26 ? ? 0.090 'SIDE CHAIN' 86 6 C A 27 ? ? 0.106 'SIDE CHAIN' 87 7 G A 1 ? ? 0.082 'SIDE CHAIN' 88 7 G A 2 ? ? 0.118 'SIDE CHAIN' 89 7 U A 5 ? ? 0.120 'SIDE CHAIN' 90 7 C A 6 ? ? 0.156 'SIDE CHAIN' 91 7 A A 7 ? ? 0.054 'SIDE CHAIN' 92 7 G A 8 ? ? 0.071 'SIDE CHAIN' 93 7 U A 10 ? ? 0.135 'SIDE CHAIN' 94 7 C A 11 ? ? 0.112 'SIDE CHAIN' 95 7 G A 13 ? ? 0.079 'SIDE CHAIN' 96 7 A A 16 ? ? 0.051 'SIDE CHAIN' 97 7 G A 21 ? ? 0.116 'SIDE CHAIN' 98 7 C A 22 ? ? 0.143 'SIDE CHAIN' 99 7 A A 23 ? ? 0.078 'SIDE CHAIN' 100 7 G A 26 ? ? 0.065 'SIDE CHAIN' 101 7 C A 28 ? ? 0.086 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 28SP _pdbx_nmr_ensemble.conformers_calculated_total_number 15 _pdbx_nmr_ensemble.conformers_submitted_total_number 7 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATIONS' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.25 MM RNA' _pdbx_nmr_sample_details.solvent_system ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 3 1 SSNOESY 1 4 1 TOCSY 1 # _pdbx_nmr_details.entry_id 28SP _pdbx_nmr_details.text 'HOMONUCLEAR NMR USING 8MM SAMPLE TUBES' # _pdbx_nmr_refine.entry_id 28SP _pdbx_nmr_refine.method 'RESTRAINED MD, COMPLETE RELAXATION-MATRIX ANALYSIS' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement Amber 5.0 'PEARLMAN, KOLLMAN ET AL.' 1 'structure solution' Sparky ? ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 28SP 'double helix' 28SP 'a-form double helix' 28SP tetraloop 28SP 'mismatched base pair' 28SP 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 28 1_555 -0.500 -0.270 0.551 6.930 -3.570 -1.160 1 A_G1:C28_A A 1 ? A 28 ? 19 1 1 A G 2 1_555 A C 27 1_555 -0.402 -0.206 -0.171 20.516 -6.871 -0.978 2 A_G2:C27_A A 2 ? A 27 ? 19 1 1 A C 3 1_555 A G 26 1_555 0.132 -0.205 -0.285 -1.734 3.993 -3.060 3 A_C3:G26_A A 3 ? A 26 ? 19 1 1 A G 4 1_555 A C 25 1_555 -0.450 -0.199 -0.020 12.037 9.534 -0.833 4 A_G4:C25_A A 4 ? A 25 ? 19 1 1 A U 5 1_555 A G 24 1_555 2.302 -0.675 -1.042 9.313 -4.362 6.257 5 A_U5:G24_A A 5 ? A 24 ? 28 1 1 A G 8 1_555 A G 21 1_555 -7.136 -3.881 0.629 13.619 -12.097 -4.164 6 A_G8:G21_A A 8 ? A 21 ? ? ? 1 A G 9 1_555 A A 20 1_555 -0.263 1.432 -0.561 12.002 -10.546 -12.600 7 A_G9:A20_A A 9 ? A 20 ? 8 ? 1 A U 10 1_555 A A 19 1_555 -0.537 0.089 -0.475 20.779 -17.854 -9.131 8 A_U10:A19_A A 10 ? A 19 ? 20 1 1 A C 11 1_555 A G 18 1_555 0.435 -0.247 -0.152 3.470 -14.818 -0.405 9 A_C11:G18_A A 11 ? A 18 ? 19 1 1 A C 12 1_555 A G 17 1_555 0.593 -0.288 -0.017 0.661 8.304 -1.324 10 A_C12:G17_A A 12 ? A 17 ? 19 1 1 A G 13 1_555 A A 16 1_555 7.169 -5.690 0.787 17.868 4.203 -33.686 11 A_G13:A16_A A 13 ? A 16 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 28 1_555 A G 2 1_555 A C 27 1_555 -3.188 -2.184 -0.524 2.759 -166.732 -164.560 1.048 -1.595 -0.804 83.425 1.380 -178.225 1 AA_G1G2:C27C28_AA A 1 ? A 28 ? A 2 ? A 27 ? 1 A G 2 1_555 A C 27 1_555 A C 3 1_555 A G 26 1_555 -0.891 -1.914 3.773 -4.021 10.017 32.340 -5.003 0.826 3.143 17.390 6.981 34.048 2 AA_G2C3:G26C27_AA A 2 ? A 27 ? A 3 ? A 26 ? 1 A C 3 1_555 A G 26 1_555 A G 4 1_555 A C 25 1_555 0.423 -1.431 3.416 -4.412 -12.813 28.302 0.086 -1.725 3.609 -24.507 8.438 31.320 3 AA_C3G4:C25G26_AA A 3 ? A 26 ? A 4 ? A 25 ? 1 A G 4 1_555 A C 25 1_555 A U 5 1_555 A G 24 1_555 0.479 -1.836 3.271 8.287 6.204 37.840 -3.461 0.251 2.981 9.354 -12.495 39.180 4 AA_G4U5:G24C25_AA A 4 ? A 25 ? A 5 ? A 24 ? 1 A G 8 1_555 A G 21 1_555 A G 9 1_555 A A 20 1_555 0.145 -0.631 3.941 8.319 11.340 45.167 -1.891 0.629 3.661 14.358 -10.534 47.196 5 AA_G8G9:A20G21_AA A 8 ? A 21 ? A 9 ? A 20 ? 1 A G 9 1_555 A A 20 1_555 A U 10 1_555 A A 19 1_555 -0.165 -1.132 3.066 -2.434 -1.772 27.690 -1.949 -0.212 3.133 -3.688 5.067 27.850 6 AA_G9U10:A19A20_AA A 9 ? A 20 ? A 10 ? A 19 ? 1 A U 10 1_555 A A 19 1_555 A C 11 1_555 A G 18 1_555 0.014 -1.208 3.527 -5.510 4.405 41.625 -2.158 -0.620 3.359 6.146 7.687 42.193 7 AA_U10C11:G18A19_AA A 10 ? A 19 ? A 11 ? A 18 ? 1 A C 11 1_555 A G 18 1_555 A C 12 1_555 A G 17 1_555 -0.523 -1.423 3.224 -2.086 9.269 33.024 -3.767 0.580 2.763 15.901 3.579 34.326 8 AA_C11C12:G17G18_AA A 11 ? A 18 ? A 12 ? A 17 ? 1 A C 12 1_555 A G 17 1_555 A G 13 1_555 A A 16 1_555 -1.382 -0.909 2.724 -0.316 6.347 64.686 -1.064 1.276 2.640 5.917 0.295 64.963 9 AA_C12G13:A16G17_AA A 12 ? A 17 ? A 13 ? A 16 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model UNITYPLUS _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 28SP _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_