data_2A4V # _entry.id 2A4V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2A4V pdb_00002a4v 10.2210/pdb2a4v/pdb RCSB RCSB033490 ? ? WWPDB D_1000033490 ? ? # _pdbx_database_status.entry_id 2A4V _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2005-06-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Choi, J.' 1 'Choi, S.' 2 'Chon, J.-K.' 3 'Choi, J.' 4 'Cha, M.-K.' 5 'Kim, I.-H.' 6 'Shin, W.' 7 # _citation.id primary _citation.title 'Crystal structure of the C107S/C112S mutant of yeast nuclear 2-Cys peroxiredoxin' _citation.journal_abbrev Proteins _citation.journal_volume 61 _citation.page_first 1146 _citation.page_last 1149 _citation.year 2005 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16245326 _citation.pdbx_database_id_DOI 10.1002/prot.20704 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Choi, J.' 1 ? primary 'Choi, S.' 2 ? primary 'Chon, J.-K.' 3 ? primary 'Choi, J.' 4 ? primary 'Cha, M.-K.' 5 ? primary 'Kim, I.-H.' 6 ? primary 'Shin, W.' 7 ? # _cell.entry_id 2A4V _cell.length_a 37.535 _cell.length_b 37.535 _cell.length_c 83.256 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2A4V _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peroxiredoxin DOT5' 17864.195 1 1.11.1.15 C107S/C112S/K123E 'C-TERMINAL DOMAIN' ? 2 water nat water 18.015 156 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Thioredoxin reductase, Nuclear thiol peroxidase, nTPx, Disrupter of telomere silencing protein 5' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SSDVNELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVT SQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFKEE ; _entity_poly.pdbx_seq_one_letter_code_can ;SSDVNELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVT SQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFKEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 ASP n 1 4 VAL n 1 5 ASN n 1 6 GLU n 1 7 LEU n 1 8 GLU n 1 9 ILE n 1 10 GLY n 1 11 ASP n 1 12 PRO n 1 13 ILE n 1 14 PRO n 1 15 ASP n 1 16 LEU n 1 17 SER n 1 18 LEU n 1 19 LEU n 1 20 ASN n 1 21 GLU n 1 22 ASP n 1 23 ASN n 1 24 ASP n 1 25 SER n 1 26 ILE n 1 27 SER n 1 28 LEU n 1 29 LYS n 1 30 LYS n 1 31 ILE n 1 32 THR n 1 33 GLU n 1 34 ASN n 1 35 ASN n 1 36 ARG n 1 37 VAL n 1 38 VAL n 1 39 VAL n 1 40 PHE n 1 41 PHE n 1 42 VAL n 1 43 TYR n 1 44 PRO n 1 45 ARG n 1 46 ALA n 1 47 SER n 1 48 THR n 1 49 PRO n 1 50 GLY n 1 51 SER n 1 52 THR n 1 53 ARG n 1 54 GLN n 1 55 ALA n 1 56 SER n 1 57 GLY n 1 58 PHE n 1 59 ARG n 1 60 ASP n 1 61 ASN n 1 62 TYR n 1 63 GLN n 1 64 GLU n 1 65 LEU n 1 66 LYS n 1 67 GLU n 1 68 TYR n 1 69 ALA n 1 70 ALA n 1 71 VAL n 1 72 PHE n 1 73 GLY n 1 74 LEU n 1 75 SER n 1 76 ALA n 1 77 ASP n 1 78 SER n 1 79 VAL n 1 80 THR n 1 81 SER n 1 82 GLN n 1 83 LYS n 1 84 LYS n 1 85 PHE n 1 86 GLN n 1 87 SER n 1 88 LYS n 1 89 GLN n 1 90 ASN n 1 91 LEU n 1 92 PRO n 1 93 TYR n 1 94 HIS n 1 95 LEU n 1 96 LEU n 1 97 SER n 1 98 ASP n 1 99 PRO n 1 100 LYS n 1 101 ARG n 1 102 GLU n 1 103 PHE n 1 104 ILE n 1 105 GLY n 1 106 LEU n 1 107 LEU n 1 108 GLY n 1 109 ALA n 1 110 LYS n 1 111 LYS n 1 112 THR n 1 113 PRO n 1 114 LEU n 1 115 SER n 1 116 GLY n 1 117 SER n 1 118 ILE n 1 119 ARG n 1 120 SER n 1 121 HIS n 1 122 PHE n 1 123 ILE n 1 124 PHE n 1 125 VAL n 1 126 ASP n 1 127 GLY n 1 128 LYS n 1 129 LEU n 1 130 LYS n 1 131 PHE n 1 132 LYS n 1 133 ARG n 1 134 VAL n 1 135 LYS n 1 136 ILE n 1 137 SER n 1 138 PRO n 1 139 GLU n 1 140 VAL n 1 141 SER n 1 142 VAL n 1 143 ASN n 1 144 ASP n 1 145 ALA n 1 146 LYS n 1 147 LYS n 1 148 GLU n 1 149 VAL n 1 150 LEU n 1 151 GLU n 1 152 VAL n 1 153 ALA n 1 154 GLU n 1 155 LYS n 1 156 PHE n 1 157 LYS n 1 158 GLU n 1 159 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene DOT5 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pT7-7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DOT5_YEAST _struct_ref.pdbx_db_accession P40553 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 57 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2A4V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 159 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P40553 _struct_ref_seq.db_align_beg 57 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 215 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 57 _struct_ref_seq.pdbx_auth_seq_align_end 215 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2A4V SER A 51 ? UNP P40553 CYS 107 'engineered mutation' 107 1 1 2A4V SER A 56 ? UNP P40553 CYS 112 'engineered mutation' 112 2 1 2A4V GLU A 67 ? UNP P40553 LYS 123 'engineered mutation' 123 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2A4V _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 35.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.9 _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'PEG 3350, mercury(II) acetate, Tris-HCl, pH 7.9, VAPOR DIFFUSION, HANGING DROP, temperature 283K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER PROTEUM 300' _diffrn_detector.pdbx_collection_date 2005-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal Monochromator' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.12714 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 6B' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.12714 _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 6B # _reflns.entry_id 2A4V _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 1.80 _reflns.number_obs 11928 _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.096 _reflns.pdbx_chi_squared 4.970 _reflns.pdbx_redundancy 4.6 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI 12.4 _reflns.pdbx_Rsym_value 0.085 _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.number_all 12169 _reflns.B_iso_Wilson_estimate 20.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_low 1.86 _reflns_shell.d_res_high 1.80 _reflns_shell.number_measured_obs 1173 _reflns_shell.percent_possible_obs 97.000 _reflns_shell.Rmerge_I_obs 0.362 _reflns_shell.pdbx_chi_squared 2.486 _reflns_shell.pdbx_redundancy 4.6 _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs 3.09 _reflns_shell.pdbx_Rsym_value 0.321 _reflns_shell.percent_possible_all 97.0 _reflns_shell.number_unique_all 1171 _reflns_shell.number_measured_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.1 _refine.ls_number_reflns_obs 11928 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all 0.167 _refine.ls_R_factor_R_work 0.165 _refine.ls_R_factor_R_free 0.215 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 598 _refine.B_iso_mean 19.279 _refine.aniso_B[1][1] 0.520 _refine.aniso_B[2][2] 0.520 _refine.aniso_B[3][3] -0.780 _refine.aniso_B[1][2] 0.260 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.pdbx_overall_ESU_R 0.149 _refine.pdbx_overall_ESU_R_Free 0.139 _refine.overall_SU_ML 0.090 _refine.overall_SU_B 2.856 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2A4V _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 12169 _refine.ls_R_factor_obs 0.167 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1240 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 156 _refine_hist.number_atoms_total 1396 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1263 0.014 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1701 1.393 1.983 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 155 5.544 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 58 32.031 24.828 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 237 13.609 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 25.593 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 189 0.105 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 945 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 627 0.203 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 877 0.307 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 118 0.097 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 42 0.193 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 15 0.101 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 805 0.931 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1265 1.421 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 507 2.312 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 436 3.612 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.846 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.000 _refine_ls_shell.number_reflns_R_work 798 _refine_ls_shell.R_factor_R_work 0.218 _refine_ls_shell.R_factor_R_free 0.309 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 841 _refine_ls_shell.number_reflns_obs 798 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2A4V _struct.title 'Crystal Structure of a truncated mutant of yeast nuclear thiol peroxidase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2A4V _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 28 ? ASN A 35 ? LEU A 84 ASN A 91 1 ? 8 HELX_P HELX_P2 2 THR A 48 ? LYS A 66 ? THR A 104 LYS A 122 1 ? 19 HELX_P HELX_P3 3 SER A 78 ? ASN A 90 ? SER A 134 ASN A 146 1 ? 13 HELX_P HELX_P4 4 ARG A 101 ? GLY A 108 ? ARG A 157 GLY A 164 1 ? 8 HELX_P HELX_P5 5 SER A 137 ? PHE A 156 ? SER A 193 PHE A 212 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 17 ? LEU A 19 ? SER A 73 LEU A 75 A 2 SER A 25 ? SER A 27 ? SER A 81 SER A 83 B 1 HIS A 94 ? SER A 97 ? HIS A 150 SER A 153 B 2 ALA A 70 ? SER A 75 ? ALA A 126 SER A 131 B 3 VAL A 37 ? VAL A 42 ? VAL A 93 VAL A 98 B 4 SER A 120 ? VAL A 125 ? SER A 176 VAL A 181 B 5 LYS A 128 ? VAL A 134 ? LYS A 184 VAL A 190 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 18 ? N LEU A 74 O ILE A 26 ? O ILE A 82 B 1 2 O LEU A 96 ? O LEU A 152 N GLY A 73 ? N GLY A 129 B 2 3 O PHE A 72 ? O PHE A 128 N PHE A 41 ? N PHE A 97 B 3 4 N VAL A 42 ? N VAL A 98 O SER A 120 ? O SER A 176 B 4 5 N ILE A 123 ? N ILE A 179 O LYS A 130 ? O LYS A 186 # _atom_sites.entry_id 2A4V _atom_sites.fract_transf_matrix[1][1] 0.026642 _atom_sites.fract_transf_matrix[1][2] 0.015382 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030763 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012011 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 57 ? ? ? A . n A 1 2 SER 2 58 ? ? ? A . n A 1 3 ASP 3 59 59 ASP ASP A . n A 1 4 VAL 4 60 60 VAL VAL A . n A 1 5 ASN 5 61 61 ASN ASN A . n A 1 6 GLU 6 62 62 GLU GLU A . n A 1 7 LEU 7 63 63 LEU LEU A . n A 1 8 GLU 8 64 64 GLU GLU A . n A 1 9 ILE 9 65 65 ILE ILE A . n A 1 10 GLY 10 66 66 GLY GLY A . n A 1 11 ASP 11 67 67 ASP ASP A . n A 1 12 PRO 12 68 68 PRO PRO A . n A 1 13 ILE 13 69 69 ILE ILE A . n A 1 14 PRO 14 70 70 PRO PRO A . n A 1 15 ASP 15 71 71 ASP ASP A . n A 1 16 LEU 16 72 72 LEU LEU A . n A 1 17 SER 17 73 73 SER SER A . n A 1 18 LEU 18 74 74 LEU LEU A . n A 1 19 LEU 19 75 75 LEU LEU A . n A 1 20 ASN 20 76 76 ASN ASN A . n A 1 21 GLU 21 77 77 GLU GLU A . n A 1 22 ASP 22 78 78 ASP ASP A . n A 1 23 ASN 23 79 79 ASN ASN A . n A 1 24 ASP 24 80 80 ASP ASP A . n A 1 25 SER 25 81 81 SER SER A . n A 1 26 ILE 26 82 82 ILE ILE A . n A 1 27 SER 27 83 83 SER SER A . n A 1 28 LEU 28 84 84 LEU LEU A . n A 1 29 LYS 29 85 85 LYS LYS A . n A 1 30 LYS 30 86 86 LYS LYS A . n A 1 31 ILE 31 87 87 ILE ILE A . n A 1 32 THR 32 88 88 THR THR A . n A 1 33 GLU 33 89 89 GLU GLU A . n A 1 34 ASN 34 90 90 ASN ASN A . n A 1 35 ASN 35 91 91 ASN ASN A . n A 1 36 ARG 36 92 92 ARG ARG A . n A 1 37 VAL 37 93 93 VAL VAL A . n A 1 38 VAL 38 94 94 VAL VAL A . n A 1 39 VAL 39 95 95 VAL VAL A . n A 1 40 PHE 40 96 96 PHE PHE A . n A 1 41 PHE 41 97 97 PHE PHE A . n A 1 42 VAL 42 98 98 VAL VAL A . n A 1 43 TYR 43 99 99 TYR TYR A . n A 1 44 PRO 44 100 100 PRO PRO A . n A 1 45 ARG 45 101 101 ARG ARG A . n A 1 46 ALA 46 102 102 ALA ALA A . n A 1 47 SER 47 103 103 SER SER A . n A 1 48 THR 48 104 104 THR THR A . n A 1 49 PRO 49 105 105 PRO PRO A . n A 1 50 GLY 50 106 106 GLY GLY A . n A 1 51 SER 51 107 107 SER SER A . n A 1 52 THR 52 108 108 THR THR A . n A 1 53 ARG 53 109 109 ARG ARG A . n A 1 54 GLN 54 110 110 GLN GLN A . n A 1 55 ALA 55 111 111 ALA ALA A . n A 1 56 SER 56 112 112 SER SER A . n A 1 57 GLY 57 113 113 GLY GLY A . n A 1 58 PHE 58 114 114 PHE PHE A . n A 1 59 ARG 59 115 115 ARG ARG A . n A 1 60 ASP 60 116 116 ASP ASP A . n A 1 61 ASN 61 117 117 ASN ASN A . n A 1 62 TYR 62 118 118 TYR TYR A . n A 1 63 GLN 63 119 119 GLN GLN A . n A 1 64 GLU 64 120 120 GLU GLU A . n A 1 65 LEU 65 121 121 LEU LEU A . n A 1 66 LYS 66 122 122 LYS LYS A . n A 1 67 GLU 67 123 123 GLU GLU A . n A 1 68 TYR 68 124 124 TYR TYR A . n A 1 69 ALA 69 125 125 ALA ALA A . n A 1 70 ALA 70 126 126 ALA ALA A . n A 1 71 VAL 71 127 127 VAL VAL A . n A 1 72 PHE 72 128 128 PHE PHE A . n A 1 73 GLY 73 129 129 GLY GLY A . n A 1 74 LEU 74 130 130 LEU LEU A . n A 1 75 SER 75 131 131 SER SER A . n A 1 76 ALA 76 132 132 ALA ALA A . n A 1 77 ASP 77 133 133 ASP ASP A . n A 1 78 SER 78 134 134 SER SER A . n A 1 79 VAL 79 135 135 VAL VAL A . n A 1 80 THR 80 136 136 THR THR A . n A 1 81 SER 81 137 137 SER SER A . n A 1 82 GLN 82 138 138 GLN GLN A . n A 1 83 LYS 83 139 139 LYS LYS A . n A 1 84 LYS 84 140 140 LYS LYS A . n A 1 85 PHE 85 141 141 PHE PHE A . n A 1 86 GLN 86 142 142 GLN GLN A . n A 1 87 SER 87 143 143 SER SER A . n A 1 88 LYS 88 144 144 LYS LYS A . n A 1 89 GLN 89 145 145 GLN GLN A . n A 1 90 ASN 90 146 146 ASN ASN A . n A 1 91 LEU 91 147 147 LEU LEU A . n A 1 92 PRO 92 148 148 PRO PRO A . n A 1 93 TYR 93 149 149 TYR TYR A . n A 1 94 HIS 94 150 150 HIS HIS A . n A 1 95 LEU 95 151 151 LEU LEU A . n A 1 96 LEU 96 152 152 LEU LEU A . n A 1 97 SER 97 153 153 SER SER A . n A 1 98 ASP 98 154 154 ASP ASP A . n A 1 99 PRO 99 155 155 PRO PRO A . n A 1 100 LYS 100 156 156 LYS LYS A . n A 1 101 ARG 101 157 157 ARG ARG A . n A 1 102 GLU 102 158 158 GLU GLU A . n A 1 103 PHE 103 159 159 PHE PHE A . n A 1 104 ILE 104 160 160 ILE ILE A . n A 1 105 GLY 105 161 161 GLY GLY A . n A 1 106 LEU 106 162 162 LEU LEU A . n A 1 107 LEU 107 163 163 LEU LEU A . n A 1 108 GLY 108 164 164 GLY GLY A . n A 1 109 ALA 109 165 165 ALA ALA A . n A 1 110 LYS 110 166 166 LYS LYS A . n A 1 111 LYS 111 167 167 LYS LYS A . n A 1 112 THR 112 168 168 THR THR A . n A 1 113 PRO 113 169 169 PRO PRO A . n A 1 114 LEU 114 170 170 LEU LEU A . n A 1 115 SER 115 171 171 SER SER A . n A 1 116 GLY 116 172 172 GLY GLY A . n A 1 117 SER 117 173 173 SER SER A . n A 1 118 ILE 118 174 174 ILE ILE A . n A 1 119 ARG 119 175 175 ARG ARG A . n A 1 120 SER 120 176 176 SER SER A . n A 1 121 HIS 121 177 177 HIS HIS A . n A 1 122 PHE 122 178 178 PHE PHE A . n A 1 123 ILE 123 179 179 ILE ILE A . n A 1 124 PHE 124 180 180 PHE PHE A . n A 1 125 VAL 125 181 181 VAL VAL A . n A 1 126 ASP 126 182 182 ASP ASP A . n A 1 127 GLY 127 183 183 GLY GLY A . n A 1 128 LYS 128 184 184 LYS LYS A . n A 1 129 LEU 129 185 185 LEU LEU A . n A 1 130 LYS 130 186 186 LYS LYS A . n A 1 131 PHE 131 187 187 PHE PHE A . n A 1 132 LYS 132 188 188 LYS LYS A . n A 1 133 ARG 133 189 189 ARG ARG A . n A 1 134 VAL 134 190 190 VAL VAL A . n A 1 135 LYS 135 191 191 LYS LYS A . n A 1 136 ILE 136 192 192 ILE ILE A . n A 1 137 SER 137 193 193 SER SER A . n A 1 138 PRO 138 194 194 PRO PRO A . n A 1 139 GLU 139 195 195 GLU GLU A . n A 1 140 VAL 140 196 196 VAL VAL A . n A 1 141 SER 141 197 197 SER SER A . n A 1 142 VAL 142 198 198 VAL VAL A . n A 1 143 ASN 143 199 199 ASN ASN A . n A 1 144 ASP 144 200 200 ASP ASP A . n A 1 145 ALA 145 201 201 ALA ALA A . n A 1 146 LYS 146 202 202 LYS LYS A . n A 1 147 LYS 147 203 203 LYS LYS A . n A 1 148 GLU 148 204 204 GLU GLU A . n A 1 149 VAL 149 205 205 VAL VAL A . n A 1 150 LEU 150 206 206 LEU LEU A . n A 1 151 GLU 151 207 207 GLU GLU A . n A 1 152 VAL 152 208 208 VAL VAL A . n A 1 153 ALA 153 209 209 ALA ALA A . n A 1 154 GLU 154 210 210 GLU GLU A . n A 1 155 LYS 155 211 211 LYS LYS A . n A 1 156 PHE 156 212 212 PHE PHE A . n A 1 157 LYS 157 213 213 LYS LYS A . n A 1 158 GLU 158 214 214 GLU GLU A . n A 1 159 GLU 159 215 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 216 1 HOH HOH A . B 2 HOH 2 217 2 HOH HOH A . B 2 HOH 3 218 3 HOH HOH A . B 2 HOH 4 219 4 HOH HOH A . B 2 HOH 5 220 5 HOH HOH A . B 2 HOH 6 221 6 HOH HOH A . B 2 HOH 7 222 7 HOH HOH A . B 2 HOH 8 223 8 HOH HOH A . B 2 HOH 9 224 9 HOH HOH A . B 2 HOH 10 225 10 HOH HOH A . B 2 HOH 11 226 11 HOH HOH A . B 2 HOH 12 227 12 HOH HOH A . B 2 HOH 13 228 13 HOH HOH A . B 2 HOH 14 229 14 HOH HOH A . B 2 HOH 15 230 15 HOH HOH A . B 2 HOH 16 231 16 HOH HOH A . B 2 HOH 17 232 17 HOH HOH A . B 2 HOH 18 233 18 HOH HOH A . B 2 HOH 19 234 19 HOH HOH A . B 2 HOH 20 235 20 HOH HOH A . B 2 HOH 21 236 21 HOH HOH A . B 2 HOH 22 237 22 HOH HOH A . B 2 HOH 23 238 23 HOH HOH A . B 2 HOH 24 239 24 HOH HOH A . B 2 HOH 25 240 25 HOH HOH A . B 2 HOH 26 241 26 HOH HOH A . B 2 HOH 27 242 27 HOH HOH A . B 2 HOH 28 243 28 HOH HOH A . B 2 HOH 29 244 29 HOH HOH A . B 2 HOH 30 245 30 HOH HOH A . B 2 HOH 31 246 31 HOH HOH A . B 2 HOH 32 247 32 HOH HOH A . B 2 HOH 33 248 33 HOH HOH A . B 2 HOH 34 249 34 HOH HOH A . B 2 HOH 35 250 35 HOH HOH A . B 2 HOH 36 251 36 HOH HOH A . B 2 HOH 37 252 37 HOH HOH A . B 2 HOH 38 253 38 HOH HOH A . B 2 HOH 39 254 39 HOH HOH A . B 2 HOH 40 255 40 HOH HOH A . B 2 HOH 41 256 41 HOH HOH A . B 2 HOH 42 257 42 HOH HOH A . B 2 HOH 43 258 43 HOH HOH A . B 2 HOH 44 259 44 HOH HOH A . B 2 HOH 45 260 45 HOH HOH A . B 2 HOH 46 261 46 HOH HOH A . B 2 HOH 47 262 47 HOH HOH A . B 2 HOH 48 263 48 HOH HOH A . B 2 HOH 49 264 49 HOH HOH A . B 2 HOH 50 265 50 HOH HOH A . B 2 HOH 51 266 51 HOH HOH A . B 2 HOH 52 267 52 HOH HOH A . B 2 HOH 53 268 53 HOH HOH A . B 2 HOH 54 269 54 HOH HOH A . B 2 HOH 55 270 55 HOH HOH A . B 2 HOH 56 271 56 HOH HOH A . B 2 HOH 57 272 57 HOH HOH A . B 2 HOH 58 273 58 HOH HOH A . B 2 HOH 59 274 59 HOH HOH A . B 2 HOH 60 275 60 HOH HOH A . B 2 HOH 61 276 61 HOH HOH A . B 2 HOH 62 277 62 HOH HOH A . B 2 HOH 63 278 63 HOH HOH A . B 2 HOH 64 279 64 HOH HOH A . B 2 HOH 65 280 65 HOH HOH A . B 2 HOH 66 281 66 HOH HOH A . B 2 HOH 67 282 67 HOH HOH A . B 2 HOH 68 283 68 HOH HOH A . B 2 HOH 69 284 69 HOH HOH A . B 2 HOH 70 285 70 HOH HOH A . B 2 HOH 71 286 71 HOH HOH A . B 2 HOH 72 287 72 HOH HOH A . B 2 HOH 73 288 73 HOH HOH A . B 2 HOH 74 289 74 HOH HOH A . B 2 HOH 75 290 75 HOH HOH A . B 2 HOH 76 291 76 HOH HOH A . B 2 HOH 77 292 77 HOH HOH A . B 2 HOH 78 293 78 HOH HOH A . B 2 HOH 79 294 79 HOH HOH A . B 2 HOH 80 295 80 HOH HOH A . B 2 HOH 81 296 81 HOH HOH A . B 2 HOH 82 297 82 HOH HOH A . B 2 HOH 83 298 83 HOH HOH A . B 2 HOH 84 299 84 HOH HOH A . B 2 HOH 85 300 85 HOH HOH A . B 2 HOH 86 301 86 HOH HOH A . B 2 HOH 87 302 87 HOH HOH A . B 2 HOH 88 303 88 HOH HOH A . B 2 HOH 89 304 89 HOH HOH A . B 2 HOH 90 305 90 HOH HOH A . B 2 HOH 91 306 91 HOH HOH A . B 2 HOH 92 307 92 HOH HOH A . B 2 HOH 93 308 93 HOH HOH A . B 2 HOH 94 309 94 HOH HOH A . B 2 HOH 95 310 95 HOH HOH A . B 2 HOH 96 311 96 HOH HOH A . B 2 HOH 97 312 97 HOH HOH A . B 2 HOH 98 313 98 HOH HOH A . B 2 HOH 99 314 99 HOH HOH A . B 2 HOH 100 315 100 HOH HOH A . B 2 HOH 101 316 101 HOH HOH A . B 2 HOH 102 317 102 HOH HOH A . B 2 HOH 103 318 103 HOH HOH A . B 2 HOH 104 319 104 HOH HOH A . B 2 HOH 105 320 105 HOH HOH A . B 2 HOH 106 321 106 HOH HOH A . B 2 HOH 107 322 107 HOH HOH A . B 2 HOH 108 323 108 HOH HOH A . B 2 HOH 109 324 109 HOH HOH A . B 2 HOH 110 325 110 HOH HOH A . B 2 HOH 111 326 111 HOH HOH A . B 2 HOH 112 327 112 HOH HOH A . B 2 HOH 113 328 113 HOH HOH A . B 2 HOH 114 329 114 HOH HOH A . B 2 HOH 115 330 115 HOH HOH A . B 2 HOH 116 331 116 HOH HOH A . B 2 HOH 117 332 117 HOH HOH A . B 2 HOH 118 333 118 HOH HOH A . B 2 HOH 119 334 119 HOH HOH A . B 2 HOH 120 335 120 HOH HOH A . B 2 HOH 121 336 121 HOH HOH A . B 2 HOH 122 337 122 HOH HOH A . B 2 HOH 123 338 123 HOH HOH A . B 2 HOH 124 339 124 HOH HOH A . B 2 HOH 125 340 125 HOH HOH A . B 2 HOH 126 341 126 HOH HOH A . B 2 HOH 127 342 127 HOH HOH A . B 2 HOH 128 343 128 HOH HOH A . B 2 HOH 129 344 129 HOH HOH A . B 2 HOH 130 345 130 HOH HOH A . B 2 HOH 131 346 131 HOH HOH A . B 2 HOH 132 347 132 HOH HOH A . B 2 HOH 133 348 133 HOH HOH A . B 2 HOH 134 349 134 HOH HOH A . B 2 HOH 135 350 135 HOH HOH A . B 2 HOH 136 351 136 HOH HOH A . B 2 HOH 137 352 137 HOH HOH A . B 2 HOH 138 353 138 HOH HOH A . B 2 HOH 139 354 139 HOH HOH A . B 2 HOH 140 355 140 HOH HOH A . B 2 HOH 141 356 141 HOH HOH A . B 2 HOH 142 357 142 HOH HOH A . B 2 HOH 143 358 143 HOH HOH A . B 2 HOH 144 359 144 HOH HOH A . B 2 HOH 145 360 145 HOH HOH A . B 2 HOH 146 361 146 HOH HOH A . B 2 HOH 147 362 147 HOH HOH A . B 2 HOH 148 363 148 HOH HOH A . B 2 HOH 149 364 149 HOH HOH A . B 2 HOH 150 365 150 HOH HOH A . B 2 HOH 151 366 151 HOH HOH A . B 2 HOH 152 367 152 HOH HOH A . B 2 HOH 153 368 153 HOH HOH A . B 2 HOH 154 369 154 HOH HOH A . B 2 HOH 155 370 155 HOH HOH A . B 2 HOH 156 371 156 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_phasing_MR.entry_id 2A4V _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 0.570 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.153 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 18.760 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 18.760 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 MOLREP . ? program 'A. Vagin' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 4 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 61 ? ? -93.53 36.95 2 1 LYS A 191 ? ? 66.27 79.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 57 ? A SER 1 2 1 Y 1 A SER 58 ? A SER 2 3 1 Y 1 A GLU 215 ? A GLU 159 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #