data_2A6C # _entry.id 2A6C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2A6C pdb_00002a6c 10.2210/pdb2a6c/pdb RCSB RCSB033542 ? ? WWPDB D_1000033542 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 358727 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2A6C _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-07-02 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of (np_841403.1) from NITROSOMONAS EUROPAEA at 1.90 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.length_a 87.862 _cell.length_b 40.788 _cell.length_c 53.393 _cell.angle_alpha 90.000 _cell.angle_beta 119.830 _cell.angle_gamma 90.000 _cell.entry_id 2A6C _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.Int_Tables_number 5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 2A6C _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Helix-turn-helix motif' 9645.531 2 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 non-polymer syn 'CITRIC ACID' 192.124 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 5 water nat water 18.015 72 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)K(MSE)RSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDL(MSE)RGKIDLFSLESL ID(MSE)ITSIGLKVEINIKDAA ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMKMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINIK DAA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 358727 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 LYS n 1 15 MSE n 1 16 ARG n 1 17 SER n 1 18 GLN n 1 19 LEU n 1 20 LEU n 1 21 ILE n 1 22 VAL n 1 23 LEU n 1 24 GLN n 1 25 GLU n 1 26 HIS n 1 27 LEU n 1 28 ARG n 1 29 ASN n 1 30 SER n 1 31 GLY n 1 32 LEU n 1 33 THR n 1 34 GLN n 1 35 PHE n 1 36 LYS n 1 37 ALA n 1 38 ALA n 1 39 GLU n 1 40 LEU n 1 41 LEU n 1 42 GLY n 1 43 VAL n 1 44 THR n 1 45 GLN n 1 46 PRO n 1 47 ARG n 1 48 VAL n 1 49 SER n 1 50 ASP n 1 51 LEU n 1 52 MSE n 1 53 ARG n 1 54 GLY n 1 55 LYS n 1 56 ILE n 1 57 ASP n 1 58 LEU n 1 59 PHE n 1 60 SER n 1 61 LEU n 1 62 GLU n 1 63 SER n 1 64 LEU n 1 65 ILE n 1 66 ASP n 1 67 MSE n 1 68 ILE n 1 69 THR n 1 70 SER n 1 71 ILE n 1 72 GLY n 1 73 LEU n 1 74 LYS n 1 75 VAL n 1 76 GLU n 1 77 ILE n 1 78 ASN n 1 79 ILE n 1 80 LYS n 1 81 ASP n 1 82 ALA n 1 83 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Nitrosomonas _entity_src_gen.pdbx_gene_src_gene np_841403.1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nitrosomonas europaea' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 915 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 19718 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q82UW4_NITEU _struct_ref.pdbx_db_accession Q82UW4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MKMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINIKDAA _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2A6C A 13 ? 83 ? Q82UW4 1 ? 71 ? 1 71 2 1 2A6C B 13 ? 83 ? Q82UW4 1 ? 71 ? 1 71 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2A6C MSE A 1 ? UNP Q82UW4 ? ? 'modified residue' -11 1 1 2A6C GLY A 2 ? UNP Q82UW4 ? ? 'expression tag' -10 2 1 2A6C SER A 3 ? UNP Q82UW4 ? ? 'expression tag' -9 3 1 2A6C ASP A 4 ? UNP Q82UW4 ? ? 'expression tag' -8 4 1 2A6C LYS A 5 ? UNP Q82UW4 ? ? 'expression tag' -7 5 1 2A6C ILE A 6 ? UNP Q82UW4 ? ? 'expression tag' -6 6 1 2A6C HIS A 7 ? UNP Q82UW4 ? ? 'expression tag' -5 7 1 2A6C HIS A 8 ? UNP Q82UW4 ? ? 'expression tag' -4 8 1 2A6C HIS A 9 ? UNP Q82UW4 ? ? 'expression tag' -3 9 1 2A6C HIS A 10 ? UNP Q82UW4 ? ? 'expression tag' -2 10 1 2A6C HIS A 11 ? UNP Q82UW4 ? ? 'expression tag' -1 11 1 2A6C HIS A 12 ? UNP Q82UW4 ? ? 'expression tag' 0 12 1 2A6C MSE A 13 ? UNP Q82UW4 MET 1 'modified residue' 1 13 1 2A6C MSE A 15 ? UNP Q82UW4 MET 3 'modified residue' 3 14 1 2A6C MSE A 52 ? UNP Q82UW4 MET 40 'modified residue' 40 15 1 2A6C MSE A 67 ? UNP Q82UW4 MET 55 'modified residue' 55 16 2 2A6C MSE B 1 ? UNP Q82UW4 ? ? 'modified residue' -11 17 2 2A6C GLY B 2 ? UNP Q82UW4 ? ? 'expression tag' -10 18 2 2A6C SER B 3 ? UNP Q82UW4 ? ? 'expression tag' -9 19 2 2A6C ASP B 4 ? UNP Q82UW4 ? ? 'expression tag' -8 20 2 2A6C LYS B 5 ? UNP Q82UW4 ? ? 'expression tag' -7 21 2 2A6C ILE B 6 ? UNP Q82UW4 ? ? 'expression tag' -6 22 2 2A6C HIS B 7 ? UNP Q82UW4 ? ? 'expression tag' -5 23 2 2A6C HIS B 8 ? UNP Q82UW4 ? ? 'expression tag' -4 24 2 2A6C HIS B 9 ? UNP Q82UW4 ? ? 'expression tag' -3 25 2 2A6C HIS B 10 ? UNP Q82UW4 ? ? 'expression tag' -2 26 2 2A6C HIS B 11 ? UNP Q82UW4 ? ? 'expression tag' -1 27 2 2A6C HIS B 12 ? UNP Q82UW4 ? ? 'expression tag' 0 28 2 2A6C MSE B 13 ? UNP Q82UW4 MET 1 'modified residue' 1 29 2 2A6C MSE B 15 ? UNP Q82UW4 MET 3 'modified residue' 3 30 2 2A6C MSE B 52 ? UNP Q82UW4 MET 40 'modified residue' 40 31 2 2A6C MSE B 67 ? UNP Q82UW4 MET 55 'modified residue' 55 32 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2A6C # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 46.01 _exptl_crystal.density_Matthews 2.30 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 273 _exptl_crystal_grow.pdbx_details '40.0 % MPD, 0.1M Phosphate Citrate, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 273K, pH 4.2' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2005-06-02 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97929 1.0 2 0.91162 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97929, 0.91162' _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 2A6C _reflns.d_resolution_low 26.48 _reflns.d_resolution_high 1.80 _reflns.number_obs 14998 _reflns.percent_possible_obs 97.700 _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy 3.700 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI 3.700 _reflns.pdbx_Rsym_value 0.095 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.percent_possible_all _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.85 1.80 954 84.500 0.516 ? 3.300 ? 1.200 0.516 ? ? ? 1 1 1.90 1.85 1045 97.100 0.455 ? 3.700 ? 1.500 0.455 ? ? ? 2 1 1.95 1.90 1056 98.500 0.377 ? 3.800 ? 1.700 0.377 ? ? ? 3 1 2.01 1.95 1012 98.200 0.308 ? 3.800 ? 2.000 0.308 ? ? ? 4 1 2.08 2.01 1004 98.500 0.261 ? 3.800 ? 2.600 0.261 ? ? ? 5 1 2.15 2.08 959 98.300 0.208 ? 3.800 ? 3.000 0.208 ? ? ? 6 1 2.23 2.15 935 99.000 0.17 ? 3.800 ? 3.700 0.17 ? ? ? 7 1 2.32 2.23 901 98.900 0.146 ? 3.800 ? 4.200 0.146 ? ? ? 8 1 2.43 2.32 859 98.600 0.135 ? 3.800 ? 4.600 0.135 ? ? ? 9 1 2.55 2.43 827 99.000 0.124 ? 3.800 ? 5.000 0.124 ? ? ? 10 1 2.68 2.55 776 99.200 0.103 ? 3.800 ? 5.700 0.103 ? ? ? 11 1 2.85 2.68 747 99.500 0.095 ? 3.700 ? 6.200 0.095 ? ? ? 12 1 3.04 2.85 687 99.300 0.087 ? 3.700 ? 7.200 0.087 ? ? ? 13 1 3.29 3.04 657 99.500 0.081 ? 3.700 ? 6.900 0.081 ? ? ? 14 1 3.60 3.29 615 99.500 0.073 ? 3.700 ? 7.300 0.073 ? ? ? 15 1 4.02 3.60 550 99.600 0.062 ? 3.700 ? 9.000 0.062 ? ? ? 16 1 4.65 4.02 482 99.500 0.071 ? 3.700 ? 6.500 0.071 ? ? ? 17 1 5.69 4.65 417 99.500 0.074 ? 3.600 ? 5.000 0.074 ? ? ? 18 1 8.05 5.69 330 99.700 0.071 ? 3.400 ? 5.900 0.071 ? ? ? 19 1 26.48 8.05 185 97.400 0.068 ? 3.200 ? 7.400 0.068 ? ? ? 20 1 # _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 20.000 _refine.ls_percent_reflns_obs 98.610 _refine.ls_number_reflns_obs 12269 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.185 _refine.ls_R_factor_R_work 0.182 _refine.ls_R_factor_R_free 0.241 _refine.ls_percent_reflns_R_free 5.200 _refine.ls_number_reflns_R_free 672 _refine.B_iso_mean 28.913 _refine.aniso_B[1][1] -1.000 _refine.aniso_B[2][2] 2.850 _refine.aniso_B[3][3] -1.020 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.830 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.pdbx_overall_ESU_R 0.151 _refine.pdbx_overall_ESU_R_Free 0.152 _refine.overall_SU_ML 0.105 _refine.overall_SU_B 7.221 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_method_to_determine_struct MAD _refine.entry_id 2A6C _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1178 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 1279 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1234 0.018 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1186 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1659 1.357 1.972 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2733 0.844 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 154 5.035 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 48 28.379 23.125 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 230 12.335 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 12.684 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 198 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1330 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 230 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 249 0.215 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1137 0.173 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 602 0.168 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 778 0.081 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 46 0.144 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 20 0.247 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 101 0.238 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.116 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 791 2.347 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 318 0.651 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1231 2.861 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 475 5.452 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 428 7.442 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.140 _refine_ls_shell.number_reflns_R_work 899 _refine_ls_shell.R_factor_R_work 0.21 _refine_ls_shell.R_factor_R_free 0.235 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 52 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 2A6C _struct.title 'CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REGULATOR (NE_1354) FROM NITROSOMONAS EUROPAEA AT 1.90 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PUTATIVE TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSCRIPTION ; _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.entry_id 2A6C # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 12 ? ASN A 29 ? HIS A 0 ASN A 17 1 ? 18 HELX_P HELX_P2 2 THR A 33 ? GLY A 42 ? THR A 21 GLY A 30 1 ? 10 HELX_P HELX_P3 3 THR A 44 ? ARG A 53 ? THR A 32 ARG A 41 1 ? 10 HELX_P HELX_P4 4 LYS A 55 ? PHE A 59 ? LYS A 43 PHE A 47 5 ? 5 HELX_P HELX_P5 5 SER A 60 ? ILE A 71 ? SER A 48 ILE A 59 1 ? 12 HELX_P HELX_P6 6 HIS B 12 ? ASN B 29 ? HIS B 0 ASN B 17 1 ? 18 HELX_P HELX_P7 7 THR B 33 ? GLY B 42 ? THR B 21 GLY B 30 1 ? 10 HELX_P HELX_P8 8 THR B 44 ? ARG B 53 ? THR B 32 ARG B 41 1 ? 10 HELX_P HELX_P9 9 LYS B 55 ? PHE B 59 ? LYS B 43 PHE B 47 5 ? 5 HELX_P HELX_P10 10 SER B 60 ? ILE B 71 ? SER B 48 ILE B 59 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 12 C ? ? ? 1_555 A MSE 13 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale2 covale both ? A MSE 13 C ? ? ? 1_555 A LYS 14 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A LYS 14 C ? ? ? 1_555 A MSE 15 N ? ? A LYS 2 A MSE 3 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale4 covale both ? A MSE 15 C ? ? ? 1_555 A ARG 16 N ? ? A MSE 3 A ARG 4 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale5 covale both ? A LEU 51 C ? ? ? 1_555 A MSE 52 N ? ? A LEU 39 A MSE 40 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? A MSE 52 C ? ? ? 1_555 A ARG 53 N ? ? A MSE 40 A ARG 41 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? A ASP 66 C ? ? ? 1_555 A MSE 67 N ? ? A ASP 54 A MSE 55 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale8 covale both ? A MSE 67 C ? ? ? 1_555 A ILE 68 N ? ? A MSE 55 A ILE 56 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale9 covale both ? B HIS 12 C ? ? ? 1_555 B MSE 13 N ? ? B HIS 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? B MSE 13 C ? ? ? 1_555 B LYS 14 N ? ? B MSE 1 B LYS 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? B LYS 14 C ? ? ? 1_555 B MSE 15 N ? ? B LYS 2 B MSE 3 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale12 covale both ? B MSE 15 C ? ? ? 1_555 B ARG 16 N ? ? B MSE 3 B ARG 4 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale13 covale both ? B LEU 51 C ? ? ? 1_555 B MSE 52 N ? ? B LEU 39 B MSE 40 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? B MSE 52 C ? ? ? 1_555 B ARG 53 N ? ? B MSE 40 B ARG 41 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale15 covale both ? B ASP 66 C ? ? ? 1_555 B MSE 67 N ? ? B ASP 54 B MSE 55 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale16 covale both ? B MSE 67 C ? ? ? 1_555 B ILE 68 N ? ? B MSE 55 B ILE 56 1_555 ? ? ? ? ? ? ? 1.326 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 72 ? 1 'BINDING SITE FOR RESIDUE EDO A 72' AC2 Software B CIT 72 ? 10 'BINDING SITE FOR RESIDUE CIT B 72' AC3 Software B GOL 73 ? 5 'BINDING SITE FOR RESIDUE GOL B 73' AC4 Software B GOL 74 ? 4 'BINDING SITE FOR RESIDUE GOL B 74' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 SER A 30 ? SER A 18 . ? 1_555 ? 2 AC2 10 HIS A 11 ? HIS A -1 . ? 2_655 ? 3 AC2 10 HIS B 11 ? HIS B -1 . ? 1_555 ? 4 AC2 10 HIS B 10 ? HIS B -2 . ? 1_555 ? 5 AC2 10 HIS B 7 ? HIS B -5 . ? 1_555 ? 6 AC2 10 HIS B 9 ? HIS B -3 . ? 1_555 ? 7 AC2 10 HIS B 8 ? HIS B -4 . ? 1_555 ? 8 AC2 10 HIS B 12 ? HIS B 0 . ? 1_555 ? 9 AC2 10 ARG B 16 ? ARG B 4 . ? 1_555 ? 10 AC2 10 GLU B 62 ? GLU B 50 . ? 2_655 ? 11 AC2 10 ASP B 66 ? ASP B 54 . ? 2_655 ? 12 AC3 5 HIS A 11 ? HIS A -1 . ? 2_655 ? 13 AC3 5 HIS A 12 ? HIS A 0 . ? 2_655 ? 14 AC3 5 HIS B 11 ? HIS B -1 . ? 1_555 ? 15 AC3 5 HIS B 12 ? HIS B 0 . ? 1_555 ? 16 AC3 5 HOH H . ? HOH B 80 . ? 2_655 ? 17 AC4 4 HIS B 26 ? HIS B 14 . ? 1_555 ? 18 AC4 4 LEU B 27 ? LEU B 15 . ? 1_555 ? 19 AC4 4 SER B 30 ? SER B 18 . ? 1_555 ? 20 AC4 4 HOH H . ? HOH B 111 . ? 4_545 ? # _atom_sites.entry_id 2A6C _atom_sites.fract_transf_matrix[1][1] 0.01138 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00653 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02452 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.02159 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 -6 ILE ILE A . n A 1 7 HIS 7 -5 -5 HIS HIS A . n A 1 8 HIS 8 -4 -4 HIS HIS A . n A 1 9 HIS 9 -3 -3 HIS HIS A . n A 1 10 HIS 10 -2 -2 HIS HIS A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 LYS 14 2 2 LYS LYS A . n A 1 15 MSE 15 3 3 MSE MSE A . n A 1 16 ARG 16 4 4 ARG ARG A . n A 1 17 SER 17 5 5 SER SER A . n A 1 18 GLN 18 6 6 GLN GLN A . n A 1 19 LEU 19 7 7 LEU LEU A . n A 1 20 LEU 20 8 8 LEU LEU A . n A 1 21 ILE 21 9 9 ILE ILE A . n A 1 22 VAL 22 10 10 VAL VAL A . n A 1 23 LEU 23 11 11 LEU LEU A . n A 1 24 GLN 24 12 12 GLN GLN A . n A 1 25 GLU 25 13 13 GLU GLU A . n A 1 26 HIS 26 14 14 HIS HIS A . n A 1 27 LEU 27 15 15 LEU LEU A . n A 1 28 ARG 28 16 16 ARG ARG A . n A 1 29 ASN 29 17 17 ASN ASN A . n A 1 30 SER 30 18 18 SER SER A . n A 1 31 GLY 31 19 19 GLY GLY A . n A 1 32 LEU 32 20 20 LEU LEU A . n A 1 33 THR 33 21 21 THR THR A . n A 1 34 GLN 34 22 22 GLN GLN A . n A 1 35 PHE 35 23 23 PHE PHE A . n A 1 36 LYS 36 24 24 LYS LYS A . n A 1 37 ALA 37 25 25 ALA ALA A . n A 1 38 ALA 38 26 26 ALA ALA A . n A 1 39 GLU 39 27 27 GLU GLU A . n A 1 40 LEU 40 28 28 LEU LEU A . n A 1 41 LEU 41 29 29 LEU LEU A . n A 1 42 GLY 42 30 30 GLY GLY A . n A 1 43 VAL 43 31 31 VAL VAL A . n A 1 44 THR 44 32 32 THR THR A . n A 1 45 GLN 45 33 33 GLN GLN A . n A 1 46 PRO 46 34 34 PRO PRO A . n A 1 47 ARG 47 35 35 ARG ARG A . n A 1 48 VAL 48 36 36 VAL VAL A . n A 1 49 SER 49 37 37 SER SER A . n A 1 50 ASP 50 38 38 ASP ASP A . n A 1 51 LEU 51 39 39 LEU LEU A . n A 1 52 MSE 52 40 40 MSE MSE A . n A 1 53 ARG 53 41 41 ARG ARG A . n A 1 54 GLY 54 42 42 GLY GLY A . n A 1 55 LYS 55 43 43 LYS LYS A . n A 1 56 ILE 56 44 44 ILE ILE A . n A 1 57 ASP 57 45 45 ASP ASP A . n A 1 58 LEU 58 46 46 LEU LEU A . n A 1 59 PHE 59 47 47 PHE PHE A . n A 1 60 SER 60 48 48 SER SER A . n A 1 61 LEU 61 49 49 LEU LEU A . n A 1 62 GLU 62 50 50 GLU GLU A . n A 1 63 SER 63 51 51 SER SER A . n A 1 64 LEU 64 52 52 LEU LEU A . n A 1 65 ILE 65 53 53 ILE ILE A . n A 1 66 ASP 66 54 54 ASP ASP A . n A 1 67 MSE 67 55 55 MSE MSE A . n A 1 68 ILE 68 56 56 ILE ILE A . n A 1 69 THR 69 57 57 THR THR A . n A 1 70 SER 70 58 58 SER SER A . n A 1 71 ILE 71 59 59 ILE ILE A . n A 1 72 GLY 72 60 60 GLY GLY A . n A 1 73 LEU 73 61 61 LEU LEU A . n A 1 74 LYS 74 62 62 LYS LYS A . n A 1 75 VAL 75 63 63 VAL VAL A . n A 1 76 GLU 76 64 64 GLU GLU A . n A 1 77 ILE 77 65 65 ILE ILE A . n A 1 78 ASN 78 66 66 ASN ASN A . n A 1 79 ILE 79 67 67 ILE ILE A . n A 1 80 LYS 80 68 68 LYS LYS A . n A 1 81 ASP 81 69 69 ASP ASP A . n A 1 82 ALA 82 70 ? ? ? A . n A 1 83 ALA 83 71 ? ? ? A . n B 1 1 MSE 1 -11 ? ? ? B . n B 1 2 GLY 2 -10 ? ? ? B . n B 1 3 SER 3 -9 ? ? ? B . n B 1 4 ASP 4 -8 ? ? ? B . n B 1 5 LYS 5 -7 ? ? ? B . n B 1 6 ILE 6 -6 -6 ILE ILE B . n B 1 7 HIS 7 -5 -5 HIS HIS B . n B 1 8 HIS 8 -4 -4 HIS HIS B . n B 1 9 HIS 9 -3 -3 HIS HIS B . n B 1 10 HIS 10 -2 -2 HIS HIS B . n B 1 11 HIS 11 -1 -1 HIS HIS B . n B 1 12 HIS 12 0 0 HIS HIS B . n B 1 13 MSE 13 1 1 MSE MSE B . n B 1 14 LYS 14 2 2 LYS LYS B . n B 1 15 MSE 15 3 3 MSE MSE B . n B 1 16 ARG 16 4 4 ARG ARG B . n B 1 17 SER 17 5 5 SER SER B . n B 1 18 GLN 18 6 6 GLN GLN B . n B 1 19 LEU 19 7 7 LEU LEU B . n B 1 20 LEU 20 8 8 LEU LEU B . n B 1 21 ILE 21 9 9 ILE ILE B . n B 1 22 VAL 22 10 10 VAL VAL B . n B 1 23 LEU 23 11 11 LEU LEU B . n B 1 24 GLN 24 12 12 GLN GLN B . n B 1 25 GLU 25 13 13 GLU GLU B . n B 1 26 HIS 26 14 14 HIS HIS B . n B 1 27 LEU 27 15 15 LEU LEU B . n B 1 28 ARG 28 16 16 ARG ARG B . n B 1 29 ASN 29 17 17 ASN ASN B . n B 1 30 SER 30 18 18 SER SER B . n B 1 31 GLY 31 19 19 GLY GLY B . n B 1 32 LEU 32 20 20 LEU LEU B . n B 1 33 THR 33 21 21 THR THR B . n B 1 34 GLN 34 22 22 GLN GLN B . n B 1 35 PHE 35 23 23 PHE PHE B . n B 1 36 LYS 36 24 24 LYS LYS B . n B 1 37 ALA 37 25 25 ALA ALA B . n B 1 38 ALA 38 26 26 ALA ALA B . n B 1 39 GLU 39 27 27 GLU GLU B . n B 1 40 LEU 40 28 28 LEU LEU B . n B 1 41 LEU 41 29 29 LEU LEU B . n B 1 42 GLY 42 30 30 GLY GLY B . n B 1 43 VAL 43 31 31 VAL VAL B . n B 1 44 THR 44 32 32 THR THR B . n B 1 45 GLN 45 33 33 GLN GLN B . n B 1 46 PRO 46 34 34 PRO PRO B . n B 1 47 ARG 47 35 35 ARG ARG B . n B 1 48 VAL 48 36 36 VAL VAL B . n B 1 49 SER 49 37 37 SER SER B . n B 1 50 ASP 50 38 38 ASP ASP B . n B 1 51 LEU 51 39 39 LEU LEU B . n B 1 52 MSE 52 40 40 MSE MSE B . n B 1 53 ARG 53 41 41 ARG ARG B . n B 1 54 GLY 54 42 42 GLY GLY B . n B 1 55 LYS 55 43 43 LYS LYS B . n B 1 56 ILE 56 44 44 ILE ILE B . n B 1 57 ASP 57 45 45 ASP ASP B . n B 1 58 LEU 58 46 46 LEU LEU B . n B 1 59 PHE 59 47 47 PHE PHE B . n B 1 60 SER 60 48 48 SER SER B . n B 1 61 LEU 61 49 49 LEU LEU B . n B 1 62 GLU 62 50 50 GLU GLU B . n B 1 63 SER 63 51 51 SER SER B . n B 1 64 LEU 64 52 52 LEU LEU B . n B 1 65 ILE 65 53 53 ILE ILE B . n B 1 66 ASP 66 54 54 ASP ASP B . n B 1 67 MSE 67 55 55 MSE MSE B . n B 1 68 ILE 68 56 56 ILE ILE B . n B 1 69 THR 69 57 57 THR THR B . n B 1 70 SER 70 58 58 SER SER B . n B 1 71 ILE 71 59 59 ILE ILE B . n B 1 72 GLY 72 60 60 GLY GLY B . n B 1 73 LEU 73 61 61 LEU LEU B . n B 1 74 LYS 74 62 62 LYS LYS B . n B 1 75 VAL 75 63 63 VAL VAL B . n B 1 76 GLU 76 64 64 GLU GLU B . n B 1 77 ILE 77 65 65 ILE ILE B . n B 1 78 ASN 78 66 66 ASN ASN B . n B 1 79 ILE 79 67 67 ILE ILE B . n B 1 80 LYS 80 68 68 LYS LYS B . n B 1 81 ASP 81 69 69 ASP ASP B . n B 1 82 ALA 82 70 ? ? ? B . n B 1 83 ALA 83 71 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 72 4 EDO EDO A . D 3 CIT 1 72 1 CIT CIT B . E 4 GOL 1 73 2 GOL GOL B . F 4 GOL 1 74 3 GOL GOL B . G 5 HOH 1 73 5 HOH HOH A . G 5 HOH 2 74 7 HOH HOH A . G 5 HOH 3 75 9 HOH HOH A . G 5 HOH 4 76 12 HOH HOH A . G 5 HOH 5 77 13 HOH HOH A . G 5 HOH 6 78 16 HOH HOH A . G 5 HOH 7 79 18 HOH HOH A . G 5 HOH 8 80 21 HOH HOH A . G 5 HOH 9 81 23 HOH HOH A . G 5 HOH 10 82 24 HOH HOH A . G 5 HOH 11 83 25 HOH HOH A . G 5 HOH 12 84 26 HOH HOH A . G 5 HOH 13 85 28 HOH HOH A . G 5 HOH 14 86 29 HOH HOH A . G 5 HOH 15 87 30 HOH HOH A . G 5 HOH 16 88 34 HOH HOH A . G 5 HOH 17 89 35 HOH HOH A . G 5 HOH 18 90 36 HOH HOH A . G 5 HOH 19 91 41 HOH HOH A . G 5 HOH 20 92 42 HOH HOH A . G 5 HOH 21 93 43 HOH HOH A . G 5 HOH 22 94 45 HOH HOH A . G 5 HOH 23 95 47 HOH HOH A . G 5 HOH 24 96 48 HOH HOH A . G 5 HOH 25 97 50 HOH HOH A . G 5 HOH 26 98 51 HOH HOH A . G 5 HOH 27 99 54 HOH HOH A . G 5 HOH 28 100 56 HOH HOH A . G 5 HOH 29 101 58 HOH HOH A . G 5 HOH 30 102 61 HOH HOH A . G 5 HOH 31 103 67 HOH HOH A . G 5 HOH 32 104 68 HOH HOH A . G 5 HOH 33 105 70 HOH HOH A . G 5 HOH 34 106 74 HOH HOH A . H 5 HOH 1 75 6 HOH HOH B . H 5 HOH 2 76 8 HOH HOH B . H 5 HOH 3 77 10 HOH HOH B . H 5 HOH 4 78 11 HOH HOH B . H 5 HOH 5 79 14 HOH HOH B . H 5 HOH 6 80 15 HOH HOH B . H 5 HOH 7 81 17 HOH HOH B . H 5 HOH 8 82 19 HOH HOH B . H 5 HOH 9 83 20 HOH HOH B . H 5 HOH 10 84 22 HOH HOH B . H 5 HOH 11 85 27 HOH HOH B . H 5 HOH 12 86 31 HOH HOH B . H 5 HOH 13 87 32 HOH HOH B . H 5 HOH 14 88 33 HOH HOH B . H 5 HOH 15 89 37 HOH HOH B . H 5 HOH 16 90 38 HOH HOH B . H 5 HOH 17 91 39 HOH HOH B . H 5 HOH 18 92 40 HOH HOH B . H 5 HOH 19 93 44 HOH HOH B . H 5 HOH 20 94 46 HOH HOH B . H 5 HOH 21 95 49 HOH HOH B . H 5 HOH 22 96 52 HOH HOH B . H 5 HOH 23 97 53 HOH HOH B . H 5 HOH 24 98 55 HOH HOH B . H 5 HOH 25 99 57 HOH HOH B . H 5 HOH 26 100 59 HOH HOH B . H 5 HOH 27 101 60 HOH HOH B . H 5 HOH 28 102 62 HOH HOH B . H 5 HOH 29 103 63 HOH HOH B . H 5 HOH 30 104 64 HOH HOH B . H 5 HOH 31 105 65 HOH HOH B . H 5 HOH 32 106 66 HOH HOH B . H 5 HOH 33 107 69 HOH HOH B . H 5 HOH 34 108 71 HOH HOH B . H 5 HOH 35 109 73 HOH HOH B . H 5 HOH 36 110 75 HOH HOH B . H 5 HOH 37 111 76 HOH HOH B . H 5 HOH 38 112 77 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 15 A MSE 3 ? MET SELENOMETHIONINE 3 A MSE 52 A MSE 40 ? MET SELENOMETHIONINE 4 A MSE 67 A MSE 55 ? MET SELENOMETHIONINE 5 B MSE 13 B MSE 1 ? MET SELENOMETHIONINE 6 B MSE 15 B MSE 3 ? MET SELENOMETHIONINE 7 B MSE 52 B MSE 40 ? MET SELENOMETHIONINE 8 B MSE 67 B MSE 55 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA,PQS dimeric 2 2 author_and_software_defined_assembly PISA monomeric 1 3 software_defined_assembly PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C,G 2 1 B,D,E,F,H 3 1,3 B,D,E,F,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2470 ? 1 MORE -14 ? 1 'SSA (A^2)' 8180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 61.3028132442 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 46.3187008440 3 'crystal symmetry operation' 2_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 87.8620000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 102 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-12 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 1 SCALA . ? program 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran ? 2 PDB_EXTRACT 1.601 'Jan. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 5 SOLVE . ? ? ? ? phasing ? ? ? 6 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 SE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.571 _pdbx_validate_rmsd_bond.bond_target_value 1.950 _pdbx_validate_rmsd_bond.bond_deviation -0.379 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.059 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE -6 ? CG1 ? A ILE 6 CG1 2 1 Y 1 A ILE -6 ? CG2 ? A ILE 6 CG2 3 1 Y 1 A ILE -6 ? CD1 ? A ILE 6 CD1 4 1 Y 1 A HIS -5 ? CG ? A HIS 7 CG 5 1 Y 1 A HIS -5 ? ND1 ? A HIS 7 ND1 6 1 Y 1 A HIS -5 ? CD2 ? A HIS 7 CD2 7 1 Y 1 A HIS -5 ? CE1 ? A HIS 7 CE1 8 1 Y 1 A HIS -5 ? NE2 ? A HIS 7 NE2 9 1 Y 1 A LYS 2 ? CG ? A LYS 14 CG 10 1 Y 1 A LYS 2 ? CD ? A LYS 14 CD 11 1 Y 1 A LYS 2 ? CE ? A LYS 14 CE 12 1 Y 1 A LYS 2 ? NZ ? A LYS 14 NZ 13 1 Y 1 A LYS 62 ? CD ? A LYS 74 CD 14 1 Y 1 A LYS 62 ? CE ? A LYS 74 CE 15 1 Y 1 A LYS 62 ? NZ ? A LYS 74 NZ 16 1 Y 1 A GLU 64 ? CD ? A GLU 76 CD 17 1 Y 1 A GLU 64 ? OE1 ? A GLU 76 OE1 18 1 Y 1 A GLU 64 ? OE2 ? A GLU 76 OE2 19 1 Y 1 A LYS 68 ? CG ? A LYS 80 CG 20 1 Y 1 A LYS 68 ? CD ? A LYS 80 CD 21 1 Y 1 A LYS 68 ? CE ? A LYS 80 CE 22 1 Y 1 A LYS 68 ? NZ ? A LYS 80 NZ 23 1 Y 1 A ASP 69 ? CB ? A ASP 81 CB 24 1 Y 1 A ASP 69 ? CG ? A ASP 81 CG 25 1 Y 1 A ASP 69 ? OD1 ? A ASP 81 OD1 26 1 Y 1 A ASP 69 ? OD2 ? A ASP 81 OD2 27 1 Y 1 B ILE -6 ? CD1 ? B ILE 6 CD1 28 1 Y 1 B LYS 24 ? CE ? B LYS 36 CE 29 1 Y 1 B LYS 24 ? NZ ? B LYS 36 NZ 30 1 Y 1 B GLU 27 ? CD ? B GLU 39 CD 31 1 Y 1 B GLU 27 ? OE1 ? B GLU 39 OE1 32 1 Y 1 B GLU 27 ? OE2 ? B GLU 39 OE2 33 1 Y 1 B LYS 62 ? CD ? B LYS 74 CD 34 1 Y 1 B LYS 62 ? CE ? B LYS 74 CE 35 1 Y 1 B LYS 62 ? NZ ? B LYS 74 NZ 36 1 Y 1 B GLU 64 ? CD ? B GLU 76 CD 37 1 Y 1 B GLU 64 ? OE1 ? B GLU 76 OE1 38 1 Y 1 B GLU 64 ? OE2 ? B GLU 76 OE2 39 1 Y 1 B LYS 68 ? CD ? B LYS 80 CD 40 1 Y 1 B LYS 68 ? CE ? B LYS 80 CE 41 1 Y 1 B LYS 68 ? NZ ? B LYS 80 NZ 42 1 Y 1 B ASP 69 ? CG ? B ASP 81 CG 43 1 Y 1 B ASP 69 ? OD1 ? B ASP 81 OD1 44 1 Y 1 B ASP 69 ? OD2 ? B ASP 81 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ALA 70 ? A ALA 82 7 1 Y 1 A ALA 71 ? A ALA 83 8 1 Y 1 B MSE -11 ? B MSE 1 9 1 Y 1 B GLY -10 ? B GLY 2 10 1 Y 1 B SER -9 ? B SER 3 11 1 Y 1 B ASP -8 ? B ASP 4 12 1 Y 1 B LYS -7 ? B LYS 5 13 1 Y 1 B ALA 70 ? B ALA 82 14 1 Y 1 B ALA 71 ? B ALA 83 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'CITRIC ACID' CIT 4 GLYCEROL GOL 5 water HOH #