data_2A9X # _entry.id 2A9X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2A9X pdb_00002a9x 10.2210/pdb2a9x/pdb RCSB RCSB033668 ? ? WWPDB D_1000033668 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2A9X _pdbx_database_status.recvd_initial_deposition_date 2005-07-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leeper, T.C.' 1 'Athanassiou, Z.' 2 'Dias, R.L.' 3 'Robinson, J.A.' 4 'Varani, G.' 5 # _citation.id primary _citation.title 'TAR RNA recognition by a cyclic peptidomimetic of Tat protein.' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 12362 _citation.page_last 12372 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16156649 _citation.pdbx_database_id_DOI 10.1021/bi0510532 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leeper, T.C.' 1 ? primary 'Athanassiou, Z.' 2 ? primary 'Dias, R.L.' 3 ? primary 'Robinson, J.A.' 4 ? primary 'Varani, G.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'BIV TAR RNA' 8923.310 1 ? ? ? ? 2 polymer syn 'BIV-2 cyclic peptide' 1754.162 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGCUCGUGUAGCUCAUUAGCUCCGAGCC GGCUCGUGUAGCUCAUUAGCUCCGAGCC 2 ? 2 'polypeptide(L)' no no RVRTRGKRRIRVPP RVRTRGKRRIRVPP 1 ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 C n 1 6 G n 1 7 U n 1 8 G n 1 9 U n 1 10 A n 1 11 G n 1 12 C n 1 13 U n 1 14 C n 1 15 A n 1 16 U n 1 17 U n 1 18 A n 1 19 G n 1 20 C n 1 21 U n 1 22 C n 1 23 C n 1 24 G n 1 25 A n 1 26 G n 1 27 C n 1 28 C n 2 1 ARG n 2 2 VAL n 2 3 ARG n 2 4 THR n 2 5 ARG n 2 6 GLY n 2 7 LYS n 2 8 ARG n 2 9 ARG n 2 10 ILE n 2 11 ARG n 2 12 VAL n 2 13 PRO n 2 14 PRO n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? ;RNA was transcribed in vitro from DNA oligonucleotide templates with T7 RNA polymerase purified in house with unlabeled or 13C/15N enriched NTPs (Silantes) and purified by denaturing PAGE. ; 2 1 sample ? ? ? ? ? 'The BIV-2 peptide was synthesized by solid phase synthesis and purified by reverse phase HPLC' # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 2A9X 2A9X ? ? ? 2 2 PDB 2A9X 2A9X ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2A9X 2 1 ? 28 ? 2A9X 4 ? 31 ? 4 31 2 2 2A9X 1 1 ? 14 ? 2A9X 1 ? 14 ? 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 2 '2D NOESY' 1 3 1 HCCH-COSY 2 4 1 HCCH-TOCSY 2 5 2 HNN-COSY 2 6 1 'F1fF2f-type 2D TOCSY' 2 7 1 'F1fF2f-type 2D NOESY' 2 8 2 'F1fF2f-type 2D NOESY' 2 9 1 '3D 31P HETCOR etc' 2 10 1 IPAP-HSQC 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 1 5 '20 mM Na+' atm K 2 275 1 5 '20 mM Na+' atm K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA, 20 mM Sodium Acetate, D3, pH 5.0, 100% D2O' '20 mM Sodium Acetate, D3, pH 5.0, 100% D2O' 2 '0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA, 20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O' '20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O' 3 '0.6 mM BIV-2 peptide plus 13C/15N labeled 0.6 mM BIV TAR RNA, 20 mM Sodium Acetate, D3, pH 5.0, 100% D2O' '20 mM Sodium Acetate, D3, pH 5.0, 100% D2O' 4 '0.6 mM BIV-2 peptide plus 13C/15N labeled 0.6 mM BIV TAR RNA, 20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O' '20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DMX Bruker 750 ? # _pdbx_nmr_refine.entry_id 2A9X _pdbx_nmr_refine.method 'Torsion Angle Molecular Dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2A9X _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2A9X _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.0 Bruker 1 processing NMRPipe 2.3 'Delaglio et al' 2 'structure solution' X-PLOR 2.9 'Schwieters et al' 3 'data analysis' Sparky 3.110 'Goddard and Kneller' 4 refinement X-PLOR 2.9 'Schwieters et al' 5 # _exptl.entry_id 2A9X _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 2A9X _struct.title 'TAR RNA recognition by a cyclic peptidomimetic of Tat protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2A9X _struct_keywords.pdbx_keywords 'RNA binding protein/RNA' _struct_keywords.text 'NMR; peptidomimetics; peptide structure, RNA recognition; immunodeficiency virus; TAR RNA;, RNA binding protein-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ARG 1 N ? ? ? 1_555 B PRO 14 C ? ? 1 ARG 1 1 PRO 14 1_555 ? ? ? ? ? ? ? 1.308 ? ? hydrog1 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 27 N4 ? ? 2 G 4 2 C 30 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 28 N3 ? ? 2 G 4 2 C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 28 O2 ? ? 2 G 4 2 C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 28 N4 ? ? 2 G 4 2 C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 27 N3 ? ? 2 G 5 2 C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 27 O2 ? ? 2 G 5 2 C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 27 N4 ? ? 2 G 5 2 C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 26 N1 ? ? 2 C 6 2 G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 26 O6 ? ? 2 C 6 2 G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 26 N2 ? ? 2 C 6 2 G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 25 N1 ? ? 2 U 7 2 A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 25 N6 ? ? 2 U 7 2 A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 24 N1 ? ? 2 C 8 2 G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 24 O6 ? ? 2 C 8 2 G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 24 N2 ? ? 2 C 8 2 G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 23 N3 ? ? 2 G 9 2 C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 23 O2 ? ? 2 G 9 2 C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 23 N4 ? ? 2 G 9 2 C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 10 N7 ? ? 2 U 10 2 A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog20 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 10 N6 ? ? 2 U 10 2 A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog21 hydrog ? ? A U 7 N3 ? ? ? 1_555 A G 11 N7 ? ? 2 U 10 2 G 14 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 22 N3 ? ? 2 G 11 2 C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 22 O2 ? ? 2 G 11 2 C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 22 N4 ? ? 2 G 11 2 C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 21 N3 ? ? 2 A 13 2 U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 21 O4 ? ? 2 A 13 2 U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 20 N3 ? ? 2 G 14 2 C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 20 O2 ? ? 2 G 14 2 C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 20 N4 ? ? 2 G 14 2 C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 12 O2 ? ? ? 1_555 A C 14 N4 ? ? 2 C 15 2 C 17 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog31 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 19 N1 ? ? 2 C 15 2 G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 19 O6 ? ? 2 C 15 2 G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 19 N2 ? ? 2 C 15 2 G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 18 N1 ? ? 2 U 16 2 A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 18 N6 ? ? 2 U 16 2 A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 13 O2 ? ? ? 1_555 A G 19 N1 ? ? 2 U 16 2 G 22 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog37 hydrog ? ? A A 15 N1 ? ? ? 1_555 A A 18 N6 ? ? 2 A 18 2 A 21 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 2A9X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2A9X _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _database_PDB_caveat.text 'chirality error at CA center of PRO 13' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 4 4 G GUA 2 . n A 1 2 G 2 5 5 G GUA 2 . n A 1 3 C 3 6 6 C CYT 2 . n A 1 4 U 4 7 7 U URI 2 . n A 1 5 C 5 8 8 C CYT 2 . n A 1 6 G 6 9 9 G GUA 2 . n A 1 7 U 7 10 10 U URI 2 . n A 1 8 G 8 11 11 G GUA 2 . n A 1 9 U 9 12 12 U URI 2 . n A 1 10 A 10 13 13 A ADE 2 . n A 1 11 G 11 14 14 G GUA 2 . n A 1 12 C 12 15 15 C CYT 2 . n A 1 13 U 13 16 16 U URI 2 . n A 1 14 C 14 17 17 C CYT 2 . n A 1 15 A 15 18 18 A ADE 2 . n A 1 16 U 16 19 19 U URI 2 . n A 1 17 U 17 20 20 U URI 2 . n A 1 18 A 18 21 21 A ADE 2 . n A 1 19 G 19 22 22 G GUA 2 . n A 1 20 C 20 23 23 C CYT 2 . n A 1 21 U 21 24 24 U URI 2 . n A 1 22 C 22 25 25 C CYT 2 . n A 1 23 C 23 26 26 C CYT 2 . n A 1 24 G 24 27 27 G GUA 2 . n A 1 25 A 25 28 28 A ADE 2 . n A 1 26 G 26 29 29 G GUA 2 . n A 1 27 C 27 30 30 C CYT 2 . n A 1 28 C 28 31 31 C CYT 2 . n B 2 1 ARG 1 1 1 ARG ARG 1 . n B 2 2 VAL 2 2 2 VAL VAL 1 . n B 2 3 ARG 3 3 3 ARG ARG 1 . n B 2 4 THR 4 4 4 THR THR 1 . n B 2 5 ARG 5 5 5 ARG ARG 1 . n B 2 6 GLY 6 6 6 GLY GLY 1 . n B 2 7 LYS 7 7 7 LYS LYS 1 . n B 2 8 ARG 8 8 8 ARG ARG 1 . n B 2 9 ARG 9 9 9 ARG ARG 1 . n B 2 10 ILE 10 10 10 ILE ILE 1 . n B 2 11 ARG 11 11 11 ARG ARG 1 . n B 2 12 VAL 12 12 12 VAL VAL 1 . n B 2 13 PRO 13 13 13 PRO PRO 1 . n B 2 14 PRO 14 14 14 PRO PRO 1 . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2 2 U 16 ? ? H5 2 C 17 ? ? 1.11 2 1 "O2'" 2 G 4 ? ? H8 2 G 5 ? ? 1.33 3 1 O4 2 U 16 ? ? HH12 1 ARG 5 ? ? 1.40 4 1 "O2'" 2 G 11 ? ? "H5''" 2 A 13 ? ? 1.57 5 2 "H2'" 2 G 9 ? ? "H5''" 2 U 10 ? ? 1.11 6 2 H3 2 U 16 ? ? H61 2 A 21 ? ? 1.30 7 2 "O2'" 2 G 4 ? ? H8 2 G 5 ? ? 1.32 8 2 "O2'" 2 G 22 ? ? H6 2 C 23 ? ? 1.42 9 2 O2 2 U 16 ? ? H42 2 C 17 ? ? 1.42 10 2 O2 2 U 16 ? ? H5 2 C 17 ? ? 1.44 11 2 "H4'" 2 U 19 ? ? OP1 2 U 20 ? ? 1.55 12 2 "O2'" 2 G 22 ? ? "H5''" 2 C 23 ? ? 1.59 13 3 "O2'" 2 G 4 ? ? H8 2 G 5 ? ? 1.33 14 3 N1 2 A 18 ? ? HE 1 ARG 8 ? ? 1.40 15 3 O 1 ARG 3 ? ? H 1 ARG 5 ? ? 1.42 16 3 N1 2 A 13 ? ? H3 2 U 24 ? ? 1.56 17 4 O2 2 U 16 ? ? H5 2 C 17 ? ? 1.19 18 4 "O2'" 2 G 4 ? ? H8 2 G 5 ? ? 1.31 19 4 O 1 ARG 1 ? ? H 1 VAL 12 ? ? 1.39 20 4 "O2'" 2 G 11 ? ? "H5''" 2 A 13 ? ? 1.44 21 4 "O2'" 2 U 10 ? ? HE 1 ARG 5 ? ? 1.57 22 4 N1 2 A 18 ? ? HE 1 ARG 8 ? ? 1.59 23 5 O2 2 U 16 ? ? H5 2 C 17 ? ? 1.27 24 5 H3 2 U 16 ? ? H61 2 A 21 ? ? 1.30 25 5 H2 2 A 18 ? ? H5 2 U 20 ? ? 1.31 26 5 "O2'" 2 G 4 ? ? H8 2 G 5 ? ? 1.33 27 5 O2 2 U 16 ? ? H42 2 C 17 ? ? 1.49 28 5 "H4'" 2 U 19 ? ? OP1 2 U 20 ? ? 1.53 29 5 O2 2 U 10 ? ? "H2'" 2 G 11 ? ? 1.53 30 5 "O2'" 2 G 22 ? ? H6 2 C 23 ? ? 1.55 31 6 "H4'" 2 A 18 ? ? "H5''" 2 U 19 ? ? 1.21 32 6 H6 2 U 19 ? ? HH21 1 ARG 8 ? ? 1.29 33 6 "O2'" 2 G 4 ? ? H8 2 G 5 ? ? 1.38 34 6 "O2'" 2 A 21 ? ? H8 2 G 22 ? ? 1.42 35 6 N3 2 A 18 ? ? HE 1 ARG 8 ? ? 1.56 36 6 "O3'" 2 U 20 ? ? HE 1 ARG 9 ? ? 1.58 37 6 N1 2 A 13 ? ? H3 2 U 24 ? ? 1.59 38 7 "O2'" 2 G 4 ? ? H8 2 G 5 ? ? 1.39 39 7 N7 2 G 9 ? ? HH21 1 ARG 1 ? ? 1.42 40 7 "O2'" 2 A 21 ? ? H8 2 G 22 ? ? 1.45 41 7 N1 2 A 18 ? ? HE 1 ARG 8 ? ? 1.55 42 7 O2 2 U 10 ? ? "H2'" 2 G 11 ? ? 1.56 43 7 N7 2 G 11 ? ? HH21 1 ARG 3 ? ? 1.57 44 8 O2 2 U 16 ? ? H5 2 C 17 ? ? 1.25 45 8 H3 2 U 16 ? ? H61 2 A 21 ? ? 1.32 46 8 "O2'" 2 G 4 ? ? H8 2 G 5 ? ? 1.34 47 8 "O3'" 2 U 20 ? ? HE 1 ARG 9 ? ? 1.54 48 8 N1 2 A 13 ? ? H3 2 U 24 ? ? 1.58 49 8 O2 2 U 16 ? ? H42 2 C 17 ? ? 1.58 50 8 HH22 1 ARG 1 ? ? N 1 ARG 3 ? ? 1.58 51 8 N1 2 A 18 ? ? HE 1 ARG 8 ? ? 1.60 52 9 "H2'" 2 C 15 ? ? "H5''" 2 U 16 ? ? 1.34 53 9 "O2'" 2 G 4 ? ? H8 2 G 5 ? ? 1.36 54 9 "O2'" 2 A 21 ? ? H8 2 G 22 ? ? 1.44 55 9 O 1 ILE 10 ? ? HE 1 ARG 11 ? ? 1.46 56 9 N1 2 A 13 ? ? H3 2 U 24 ? ? 1.59 57 9 H3 2 U 10 ? ? N7 2 A 13 ? ? 1.60 58 10 "H2'" 2 G 22 ? ? H6 2 C 23 ? ? 1.31 59 10 "O2'" 2 A 21 ? ? H8 2 G 22 ? ? 1.31 60 10 "O2'" 2 G 4 ? ? H8 2 G 5 ? ? 1.32 61 10 N1 2 A 18 ? ? HE 1 ARG 8 ? ? 1.38 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 2 _pdbx_validate_rmsd_bond.auth_atom_id_1 "C4'" _pdbx_validate_rmsd_bond.auth_asym_id_1 2 _pdbx_validate_rmsd_bond.auth_comp_id_1 C _pdbx_validate_rmsd_bond.auth_seq_id_1 26 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 2 _pdbx_validate_rmsd_bond.auth_comp_id_2 C _pdbx_validate_rmsd_bond.auth_seq_id_2 26 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.594 _pdbx_validate_rmsd_bond.bond_target_value 1.527 _pdbx_validate_rmsd_bond.bond_deviation 0.067 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" 2 G 11 ? ? "C4'" 2 G 11 ? ? "C3'" 2 G 11 ? ? 105.97 115.20 -9.23 1.40 N 2 1 "C5'" 2 A 21 ? ? "C4'" 2 A 21 ? ? "C3'" 2 A 21 ? ? 106.09 115.20 -9.11 1.40 N 3 3 "C5'" 2 G 11 ? ? "C4'" 2 G 11 ? ? "C3'" 2 G 11 ? ? 106.26 115.20 -8.94 1.40 N 4 3 "C5'" 2 U 16 ? ? "C4'" 2 U 16 ? ? "C3'" 2 U 16 ? ? 106.31 115.20 -8.89 1.40 N 5 3 "C5'" 2 A 21 ? ? "C4'" 2 A 21 ? ? "C3'" 2 A 21 ? ? 106.39 115.20 -8.81 1.40 N 6 4 "C5'" 2 U 10 ? ? "C4'" 2 U 10 ? ? "C3'" 2 U 10 ? ? 106.64 115.20 -8.56 1.40 N 7 4 "C5'" 2 A 21 ? ? "C4'" 2 A 21 ? ? "C3'" 2 A 21 ? ? 106.03 115.20 -9.17 1.40 N 8 5 "C5'" 2 G 11 ? ? "C4'" 2 G 11 ? ? "C3'" 2 G 11 ? ? 105.53 115.20 -9.67 1.40 N 9 5 "C5'" 2 A 18 ? ? "C4'" 2 A 18 ? ? "C3'" 2 A 18 ? ? 105.05 115.20 -10.15 1.40 N 10 5 "C5'" 2 A 21 ? ? "C4'" 2 A 21 ? ? "C3'" 2 A 21 ? ? 105.39 115.20 -9.81 1.40 N 11 6 "C5'" 2 G 11 ? ? "C4'" 2 G 11 ? ? "C3'" 2 G 11 ? ? 106.38 115.20 -8.82 1.40 N 12 6 "C5'" 2 A 13 ? ? "C4'" 2 A 13 ? ? "C3'" 2 A 13 ? ? 106.20 115.20 -9.00 1.40 N 13 6 "C5'" 2 U 16 ? ? "C4'" 2 U 16 ? ? "C3'" 2 U 16 ? ? 106.61 115.20 -8.59 1.40 N 14 6 "C5'" 2 A 21 ? ? "C4'" 2 A 21 ? ? "C3'" 2 A 21 ? ? 105.32 115.20 -9.88 1.40 N 15 6 "C5'" 2 G 22 ? ? "C4'" 2 G 22 ? ? "C3'" 2 G 22 ? ? 106.78 115.20 -8.42 1.40 N 16 7 "C5'" 2 G 11 ? ? "C4'" 2 G 11 ? ? "C3'" 2 G 11 ? ? 106.62 115.20 -8.58 1.40 N 17 8 "C5'" 2 A 13 ? ? "C4'" 2 A 13 ? ? "C3'" 2 A 13 ? ? 106.60 115.20 -8.60 1.40 N 18 8 "C5'" 2 U 16 ? ? "C4'" 2 U 16 ? ? "C3'" 2 U 16 ? ? 106.63 115.20 -8.57 1.40 N 19 8 "C5'" 2 A 18 ? ? "C4'" 2 A 18 ? ? "C3'" 2 A 18 ? ? 106.04 115.20 -9.16 1.40 N 20 8 "C5'" 2 A 21 ? ? "C4'" 2 A 21 ? ? "C3'" 2 A 21 ? ? 105.66 115.20 -9.54 1.40 N 21 9 "C5'" 2 G 11 ? ? "C4'" 2 G 11 ? ? "C3'" 2 G 11 ? ? 106.78 115.20 -8.42 1.40 N 22 9 "C5'" 2 U 16 ? ? "C4'" 2 U 16 ? ? "C3'" 2 U 16 ? ? 105.78 115.20 -9.42 1.40 N 23 10 "C5'" 2 U 16 ? ? "C4'" 2 U 16 ? ? "C3'" 2 U 16 ? ? 106.20 115.20 -9.00 1.40 N 24 10 "C5'" 2 A 21 ? ? "C4'" 2 A 21 ? ? "C3'" 2 A 21 ? ? 106.24 115.20 -8.96 1.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG 1 3 ? ? -64.87 1.18 2 1 THR 1 4 ? ? 26.38 71.35 3 1 ARG 1 5 ? ? -37.97 149.54 4 1 LYS 1 7 ? ? -141.18 -43.30 5 1 ARG 1 8 ? ? -92.08 -159.01 6 1 PRO 1 13 ? ? 77.65 -122.46 7 2 VAL 1 2 ? ? -150.75 60.91 8 2 ARG 1 5 ? ? -40.73 101.18 9 2 PRO 1 13 ? ? 77.15 -126.06 10 3 THR 1 4 ? ? -63.62 54.75 11 3 PRO 1 13 ? ? 73.67 -121.59 12 4 ARG 1 3 ? ? -55.51 81.30 13 4 THR 1 4 ? ? -60.90 81.41 14 4 ARG 1 5 ? ? -39.34 -92.12 15 4 ARG 1 9 ? ? -165.10 112.63 16 4 PRO 1 13 ? ? 48.88 -102.38 17 5 ARG 1 3 ? ? -101.90 41.90 18 5 ARG 1 8 ? ? -101.00 -158.30 19 5 PRO 1 13 ? ? 80.63 -124.19 20 6 VAL 1 2 ? ? -171.56 84.73 21 6 ARG 1 8 ? ? -134.92 -152.24 22 6 PRO 1 13 ? ? 82.58 -127.84 23 7 THR 1 4 ? ? -69.16 85.02 24 7 ARG 1 5 ? ? -58.68 -168.66 25 7 ARG 1 9 ? ? -161.29 106.91 26 7 PRO 1 13 ? ? 84.93 -128.84 27 8 THR 1 4 ? ? -45.09 89.78 28 8 ARG 1 5 ? ? -64.80 -153.42 29 8 ARG 1 8 ? ? -97.92 -155.42 30 8 ARG 1 9 ? ? -176.88 91.87 31 8 VAL 1 12 ? ? -152.22 86.79 32 8 PRO 1 13 ? ? 84.96 -131.12 33 9 ARG 1 3 ? ? -145.68 53.37 34 9 ARG 1 8 ? ? -94.73 -145.88 35 9 ARG 1 9 ? ? -165.73 100.76 36 9 VAL 1 12 ? ? -154.42 87.73 37 9 PRO 1 13 ? ? 81.30 -135.32 38 10 THR 1 4 ? ? -57.67 2.25 39 10 ARG 1 5 ? ? 39.13 23.62 40 10 ARG 1 8 ? ? -59.79 -155.66 41 10 ARG 1 9 ? ? -170.42 113.63 42 10 PRO 1 13 ? ? 85.55 -128.64 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CA ? 1 PRO 13 ? 'WRONG HAND' . 2 2 CA ? 1 PRO 13 ? 'WRONG HAND' . 3 3 CA ? 1 PRO 13 ? 'WRONG HAND' . 4 4 CA ? 1 PRO 13 ? 'WRONG HAND' . 5 5 CA ? 1 PRO 13 ? 'WRONG HAND' . 6 6 CA ? 1 PRO 13 ? 'WRONG HAND' . 7 7 CA ? 1 PRO 13 ? 'WRONG HAND' . 8 8 CA ? 1 PRO 13 ? 'WRONG HAND' . 9 9 CA ? 1 PRO 13 ? 'WRONG HAND' . 10 10 CA ? 1 PRO 13 ? 'WRONG HAND' . # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2A9X 'double helix' 2A9X 'a-form double helix' 2A9X 'hairpin loop' 2A9X 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 28 1_555 0.748 -0.075 -0.167 2.053 1.623 -2.901 1 2_G4:C31_2 2 4 ? 2 31 ? 19 1 1 A G 2 1_555 A C 27 1_555 -0.615 -0.376 0.034 6.749 -10.166 0.111 2 2_G5:C30_2 2 5 ? 2 30 ? 19 1 1 A C 3 1_555 A G 26 1_555 0.744 -0.357 -0.490 5.953 -20.504 9.932 3 2_C6:G29_2 2 6 ? 2 29 ? 19 1 1 A U 4 1_555 A A 25 1_555 -0.688 -0.236 -0.123 -1.614 -8.496 5.173 4 2_U7:A28_2 2 7 ? 2 28 ? 20 1 1 A C 5 1_555 A G 24 1_555 0.074 -0.049 0.154 -20.958 -14.158 1.176 5 2_C8:G27_2 2 8 ? 2 27 ? 19 1 1 A G 6 1_555 A C 23 1_555 0.267 -0.207 0.181 1.771 14.826 -5.169 6 2_G9:C26_2 2 9 ? 2 26 ? 19 1 1 A G 8 1_555 A C 22 1_555 -0.210 -0.193 -0.116 5.915 -6.709 -0.352 7 2_G11:C25_2 2 11 ? 2 25 ? 19 1 1 A A 10 1_555 A U 21 1_555 -0.534 -0.387 0.022 -0.351 -4.076 11.037 8 2_A13:U24_2 2 13 ? 2 24 ? 20 1 1 A G 11 1_555 A C 20 1_555 -0.579 -0.340 0.078 1.707 -10.475 -0.233 9 2_G14:C23_2 2 14 ? 2 23 ? 19 1 1 A C 12 1_555 A G 19 1_555 -0.641 -0.181 0.526 -9.493 6.879 -3.721 10 2_C15:G22_2 2 15 ? 2 22 ? 19 1 1 A U 13 1_555 A A 18 1_555 1.199 -0.837 -1.148 16.851 -5.753 0.229 11 2_U16:A21_2 2 16 ? 2 21 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 28 1_555 A G 2 1_555 A C 27 1_555 -0.384 -0.955 2.551 -8.386 14.095 30.635 -3.201 -0.307 1.974 24.591 14.631 34.656 1 22_G4G5:C30C31_22 2 4 ? 2 31 ? 2 5 ? 2 30 ? 1 A G 2 1_555 A C 27 1_555 A C 3 1_555 A G 26 1_555 0.242 -0.537 3.509 5.897 9.976 38.264 -2.005 0.366 3.274 14.809 -8.754 39.917 2 22_G5C6:G29C30_22 2 5 ? 2 30 ? 2 6 ? 2 29 ? 1 A C 3 1_555 A G 26 1_555 A U 4 1_555 A A 25 1_555 -0.141 -1.348 3.045 -4.334 22.512 24.227 -5.316 -0.323 1.353 43.223 8.321 33.236 3 22_C6U7:A28G29_22 2 6 ? 2 29 ? 2 7 ? 2 28 ? 1 A U 4 1_555 A A 25 1_555 A C 5 1_555 A G 24 1_555 -0.730 -0.989 4.043 -1.175 9.035 32.045 -3.536 1.039 3.660 15.967 2.077 33.283 4 22_U7C8:G27A28_22 2 7 ? 2 28 ? 2 8 ? 2 27 ? 1 A C 5 1_555 A G 24 1_555 A G 6 1_555 A C 23 1_555 -0.356 -0.740 3.038 -1.467 -16.573 33.624 1.002 0.365 3.072 -26.714 2.364 37.408 5 22_C8G9:C26G27_22 2 8 ? 2 27 ? 2 9 ? 2 26 ? 1 A G 6 1_555 A C 23 1_555 A G 8 1_555 A C 22 1_555 0.140 -1.954 3.365 7.280 8.665 30.190 -5.000 0.989 2.678 15.948 -13.399 32.195 6 22_G9G11:C25C26_22 2 9 ? 2 26 ? 2 11 ? 2 25 ? 1 A G 8 1_555 A C 22 1_555 A A 10 1_555 A U 21 1_555 -0.301 -1.354 3.425 -9.068 -5.168 25.968 -1.449 -1.754 3.528 -10.953 19.220 27.953 7 22_G11A13:U24C25_22 2 11 ? 2 25 ? 2 13 ? 2 24 ? 1 A A 10 1_555 A U 21 1_555 A G 11 1_555 A C 20 1_555 0.457 -1.361 2.855 -4.024 24.909 18.345 -5.707 -1.364 0.558 53.843 8.697 31.108 8 22_A13G14:C23U24_22 2 13 ? 2 24 ? 2 14 ? 2 23 ? 1 A G 11 1_555 A C 20 1_555 A C 12 1_555 A G 19 1_555 0.201 -1.429 3.567 0.152 5.426 35.095 -3.184 -0.306 3.317 8.932 -0.251 35.500 9 22_G14C15:G22C23_22 2 14 ? 2 23 ? 2 15 ? 2 22 ? 1 A C 12 1_555 A G 19 1_555 A U 13 1_555 A A 18 1_555 0.602 -0.470 2.483 13.578 0.036 38.831 -0.673 0.311 2.545 0.052 -19.704 41.050 10 22_C15U16:A21G22_22 2 15 ? 2 22 ? 2 16 ? 2 21 ? #