HEADER HYDROLASE/DNA 19-JUL-05 2ACJ TITLE CRYSTAL STRUCTURE OF THE B/Z JUNCTION CONTAINING DNA BOUND TO Z-DNA TITLE 2 BINDING PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*TP*CP*GP*CP*GP*CP*GP*CP*CP*AP*TP*AP*AP*AP*CP*C)- COMPND 3 3'; COMPND 4 CHAIN: E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*CP*GP*GP*TP*TP*TP*AP*TP*GP*GP*CP*GP*CP*GP*CP*G)- COMPND 8 3'; COMPND 9 CHAIN: F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DOUBLE-STRANDED RNA-SPECIFIC ADENOSINE DEAMINASE; COMPND 13 CHAIN: A, B, C, D; COMPND 14 FRAGMENT: ZALPHA DOMAIN, ADAR1; COMPND 15 SYNONYM: DRADA, 136 KDA DOUBLE-STRANDED RNA BINDING PROTEIN, P136, COMPND 16 K88DSRBP, INTERFERON-INDUCIBLE PROTEIN 4, IFI-4 PROTEIN; COMPND 17 EC: 3.5.4.-; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: SYNTHETIC; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: ADAR1; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS A B-Z JUCTION, PROTEIN-DNA COMPLEX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.C.HA,K.LOWENHAUPT,A.RICH,Y.-G.KIM,K.K.KIM REVDAT 4 13-MAR-24 2ACJ 1 SEQADV REVDAT 3 13-JUL-11 2ACJ 1 VERSN REVDAT 2 24-FEB-09 2ACJ 1 VERSN REVDAT 1 25-OCT-05 2ACJ 0 JRNL AUTH S.C.HA,K.LOWENHAUPT,A.RICH,Y.G.KIM,K.K.KIM JRNL TITL CRYSTAL STRUCTURE OF A JUNCTION BETWEEN B-DNA AND Z-DNA JRNL TITL 2 REVEALS TWO EXTRUDED BASES. JRNL REF NATURE V. 437 1183 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 16237447 JRNL DOI 10.1038/NATURE04088 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 11327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1232 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 797 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4310 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.5090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1888 REMARK 3 NUCLEIC ACID ATOMS : 691 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.37000 REMARK 3 B22 (A**2) : 2.37000 REMARK 3 B33 (A**2) : -3.55000 REMARK 3 B12 (A**2) : 1.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.374 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.343 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.072 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2691 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2168 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3756 ; 1.498 ; 2.319 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5164 ; 0.911 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 4.509 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2385 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 325 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 579 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2418 ; 0.224 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1316 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 43 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 58 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1224 ; 1.751 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1943 ; 3.400 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1467 ; 2.547 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1813 ; 4.450 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 77.5488 -6.2261 62.2119 REMARK 3 T TENSOR REMARK 3 T11: 0.4276 T22: 0.2194 REMARK 3 T33: 0.0107 T12: 0.0287 REMARK 3 T13: -0.0488 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 5.6057 L22: 8.4817 REMARK 3 L33: 1.5328 L12: 0.1437 REMARK 3 L13: -2.6348 L23: 1.0089 REMARK 3 S TENSOR REMARK 3 S11: -0.0957 S12: -0.0352 S13: -0.3907 REMARK 3 S21: 1.1339 S22: 0.0022 S23: -0.5428 REMARK 3 S31: -0.0906 S32: 0.2279 S33: 0.0935 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): 65.9691 18.5288 43.9577 REMARK 3 T TENSOR REMARK 3 T11: 0.2257 T22: 0.1067 REMARK 3 T33: 0.4630 T12: 0.0239 REMARK 3 T13: 0.1221 T23: -0.1285 REMARK 3 L TENSOR REMARK 3 L11: 2.1932 L22: -0.5019 REMARK 3 L33: 0.5116 L12: 2.2885 REMARK 3 L13: -0.1290 L23: 0.2122 REMARK 3 S TENSOR REMARK 3 S11: 0.1613 S12: -0.2485 S13: 0.4431 REMARK 3 S21: -0.1539 S22: -0.0898 S23: 0.2196 REMARK 3 S31: -0.2267 S32: 0.0395 S33: -0.0715 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -3 C 200 REMARK 3 ORIGIN FOR THE GROUP (A): 54.9418 -11.9034 40.6903 REMARK 3 T TENSOR REMARK 3 T11: 0.1075 T22: 0.2096 REMARK 3 T33: 0.3512 T12: -0.0645 REMARK 3 T13: 0.0463 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 3.1340 L22: 0.8991 REMARK 3 L33: 2.4852 L12: 0.0955 REMARK 3 L13: 1.0146 L23: -1.2293 REMARK 3 S TENSOR REMARK 3 S11: 0.1171 S12: -0.0932 S13: -0.3901 REMARK 3 S21: -0.0761 S22: -0.0780 S23: 0.1119 REMARK 3 S31: 0.1776 S32: -0.1353 S33: -0.0391 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -3 D 199 REMARK 3 ORIGIN FOR THE GROUP (A): 88.5542 -3.7266 36.7720 REMARK 3 T TENSOR REMARK 3 T11: 0.0992 T22: 0.2932 REMARK 3 T33: 0.3031 T12: -0.0015 REMARK 3 T13: 0.0520 T23: 0.1008 REMARK 3 L TENSOR REMARK 3 L11: 2.5687 L22: 2.5485 REMARK 3 L33: 1.7246 L12: -0.3464 REMARK 3 L13: 0.5938 L23: 0.1675 REMARK 3 S TENSOR REMARK 3 S11: 0.1246 S12: -0.3966 S13: -0.1538 REMARK 3 S21: -0.0869 S22: -0.2262 S23: -0.0869 REMARK 3 S31: 0.0108 S32: 0.5414 S33: 0.1016 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 17 REMARK 3 ORIGIN FOR THE GROUP (A): 68.8652 3.1598 37.8717 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.1887 REMARK 3 T33: 0.1347 T12: 0.0091 REMARK 3 T13: 0.0521 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 1.6004 L22: 0.5079 REMARK 3 L33: 4.9469 L12: -0.1904 REMARK 3 L13: -1.3687 L23: -0.8051 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: -0.0244 S13: 0.2956 REMARK 3 S21: 0.0530 S22: -0.3362 S23: 0.1030 REMARK 3 S31: 0.1805 S32: 0.1293 S33: 0.3012 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 18 F 34 REMARK 3 ORIGIN FOR THE GROUP (A): 70.0919 0.4613 30.5054 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.1796 REMARK 3 T33: 0.1837 T12: -0.0184 REMARK 3 T13: 0.1044 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.5024 L22: 0.4527 REMARK 3 L33: -3.5904 L12: 0.3813 REMARK 3 L13: 0.9655 L23: -0.3359 REMARK 3 S TENSOR REMARK 3 S11: 0.1416 S12: 0.0162 S13: 0.0260 REMARK 3 S21: -0.0027 S22: -0.0875 S23: -0.0504 REMARK 3 S31: -0.1056 S32: 0.1923 S33: -0.0540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 THE STRUCTURE WAS REFINED ALSO WITH CNS 1.1. REMARK 4 REMARK 4 2ACJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97939, 0.97952, 0.97171 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13389 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-23% MPD, 55-60MM SODIUM ACETATE, 15 REMARK 280 -16MM CALSIUM CHLORIDE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.58733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.17467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.88100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.46833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 10.29367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -3 REMARK 465 LEU A 147 REMARK 465 GLU A 148 REMARK 465 GLU A 149 REMARK 465 LEU A 150 REMARK 465 GLY A 151 REMARK 465 GLU A 152 REMARK 465 GLY A 153 REMARK 465 LYS A 154 REMARK 465 ALA A 155 REMARK 465 SER A 200 REMARK 465 THR A 201 REMARK 465 GLN A 202 REMARK 465 SER B -3 REMARK 465 SER D 200 REMARK 465 THR D 201 REMARK 465 GLN D 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 GLN A 141 CG CD OE1 NE2 REMARK 470 ARG A 142 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 143 CG1 CG2 CD1 REMARK 470 LEU A 144 CG CD1 CD2 REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 PHE A 146 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B -2 CG ND1 CD2 CE1 NE2 REMARK 470 HIS D -2 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 1 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 DC E 3 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG E 4 O4' - C1' - N9 ANGL. DEV. = -4.7 DEGREES REMARK 500 DC E 10 C3' - O3' - P ANGL. DEV. = 10.9 DEGREES REMARK 500 DA E 13 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA E 14 O4' - C1' - N9 ANGL. DEV. = -4.6 DEGREES REMARK 500 DC E 17 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG F 21 O5' - P - OP2 ANGL. DEV. = -5.9 DEGREES REMARK 500 DG F 21 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT F 24 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT F 26 N3 - C4 - O4 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT F 26 C5 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG F 28 O4' - C1' - N9 ANGL. DEV. = -6.2 DEGREES REMARK 500 DG F 34 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG F 34 N1 - C6 - O6 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG F 34 C5 - C6 - O6 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 143 -37.15 -36.99 REMARK 500 GLU B 149 47.73 -77.18 REMARK 500 ALA C 198 157.38 -47.25 REMARK 500 VAL C 199 -0.62 -144.40 REMARK 500 GLU D 149 -75.42 -61.62 REMARK 500 LEU D 150 89.68 -47.72 REMARK 500 LYS D 164 9.10 -68.51 REMARK 500 LYS D 182 1.25 -66.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 2ACJ A 140 202 UNP P55265 DSRAD_HUMAN 140 202 DBREF 2ACJ B 140 202 UNP P55265 DSRAD_HUMAN 140 202 DBREF 2ACJ C 140 202 UNP P55265 DSRAD_HUMAN 140 202 DBREF 2ACJ D 140 202 UNP P55265 DSRAD_HUMAN 140 202 DBREF 2ACJ E 1 17 PDB 2ACJ 2ACJ 1 17 DBREF 2ACJ F 18 34 PDB 2ACJ 2ACJ 18 34 SEQADV 2ACJ SER A -3 UNP P55265 CLONING ARTIFACT SEQADV 2ACJ HIS A -2 UNP P55265 CLONING ARTIFACT SEQADV 2ACJ MET A -1 UNP P55265 CLONING ARTIFACT SEQADV 2ACJ SER B -3 UNP P55265 CLONING ARTIFACT SEQADV 2ACJ HIS B -2 UNP P55265 CLONING ARTIFACT SEQADV 2ACJ MET B -1 UNP P55265 CLONING ARTIFACT SEQADV 2ACJ SER C -3 UNP P55265 CLONING ARTIFACT SEQADV 2ACJ HIS C -2 UNP P55265 CLONING ARTIFACT SEQADV 2ACJ MET C -1 UNP P55265 CLONING ARTIFACT SEQADV 2ACJ SER D -3 UNP P55265 CLONING ARTIFACT SEQADV 2ACJ HIS D -2 UNP P55265 CLONING ARTIFACT SEQADV 2ACJ MET D -1 UNP P55265 CLONING ARTIFACT SEQRES 1 E 17 DG DT DC DG DC DG DC DG DC DC DA DT DA SEQRES 2 E 17 DA DA DC DC SEQRES 1 F 17 DA DC DG DG DT DT DT DA DT DG DG DC DG SEQRES 2 F 17 DC DG DC DG SEQRES 1 A 66 SER HIS MET GLU GLN ARG ILE LEU LYS PHE LEU GLU GLU SEQRES 2 A 66 LEU GLY GLU GLY LYS ALA THR THR ALA HIS ASP LEU SER SEQRES 3 A 66 GLY LYS LEU GLY THR PRO LYS LYS GLU ILE ASN ARG VAL SEQRES 4 A 66 LEU TYR SER LEU ALA LYS LYS GLY LYS LEU GLN LYS GLU SEQRES 5 A 66 ALA GLY THR PRO PRO LEU TRP LYS ILE ALA VAL SER THR SEQRES 6 A 66 GLN SEQRES 1 B 66 SER HIS MET GLU GLN ARG ILE LEU LYS PHE LEU GLU GLU SEQRES 2 B 66 LEU GLY GLU GLY LYS ALA THR THR ALA HIS ASP LEU SER SEQRES 3 B 66 GLY LYS LEU GLY THR PRO LYS LYS GLU ILE ASN ARG VAL SEQRES 4 B 66 LEU TYR SER LEU ALA LYS LYS GLY LYS LEU GLN LYS GLU SEQRES 5 B 66 ALA GLY THR PRO PRO LEU TRP LYS ILE ALA VAL SER THR SEQRES 6 B 66 GLN SEQRES 1 C 66 SER HIS MET GLU GLN ARG ILE LEU LYS PHE LEU GLU GLU SEQRES 2 C 66 LEU GLY GLU GLY LYS ALA THR THR ALA HIS ASP LEU SER SEQRES 3 C 66 GLY LYS LEU GLY THR PRO LYS LYS GLU ILE ASN ARG VAL SEQRES 4 C 66 LEU TYR SER LEU ALA LYS LYS GLY LYS LEU GLN LYS GLU SEQRES 5 C 66 ALA GLY THR PRO PRO LEU TRP LYS ILE ALA VAL SER THR SEQRES 6 C 66 GLN SEQRES 1 D 66 SER HIS MET GLU GLN ARG ILE LEU LYS PHE LEU GLU GLU SEQRES 2 D 66 LEU GLY GLU GLY LYS ALA THR THR ALA HIS ASP LEU SER SEQRES 3 D 66 GLY LYS LEU GLY THR PRO LYS LYS GLU ILE ASN ARG VAL SEQRES 4 D 66 LEU TYR SER LEU ALA LYS LYS GLY LYS LEU GLN LYS GLU SEQRES 5 D 66 ALA GLY THR PRO PRO LEU TRP LYS ILE ALA VAL SER THR SEQRES 6 D 66 GLN HELIX 1 1 HIS A -2 PHE A 146 1 9 HELIX 2 2 THR A 157 LEU A 165 1 9 HELIX 3 3 PRO A 168 LYS A 182 1 15 HELIX 4 4 HIS B -2 GLU B 149 1 12 HELIX 5 5 THR B 157 LEU B 165 1 9 HELIX 6 6 PRO B 168 GLY B 183 1 16 HELIX 7 7 HIS C -2 LEU C 150 1 13 HELIX 8 8 THR C 157 GLY C 166 1 10 HELIX 9 9 PRO C 168 LYS C 182 1 15 HELIX 10 10 HIS D -2 LEU D 150 1 13 HELIX 11 11 THR D 157 LYS D 164 1 8 HELIX 12 12 PRO D 168 LYS D 182 1 15 SHEET 1 A 2 LEU A 185 GLU A 188 0 SHEET 2 A 2 LEU A 194 ILE A 197 -1 O LEU A 194 N GLU A 188 SHEET 1 B 2 LEU B 185 GLU B 188 0 SHEET 2 B 2 LEU B 194 ILE B 197 -1 O LEU B 194 N GLU B 188 SHEET 1 C 2 LEU C 185 GLU C 188 0 SHEET 2 C 2 LEU C 194 ILE C 197 -1 O LEU C 194 N GLU C 188 SHEET 1 D 2 LEU D 185 GLU D 188 0 SHEET 2 D 2 LEU D 194 ILE D 197 -1 O LYS D 196 N GLN D 186 CISPEP 1 THR A 191 PRO A 192 0 1.21 CISPEP 2 THR B 191 PRO B 192 0 -4.68 CISPEP 3 THR C 191 PRO C 192 0 -1.30 CISPEP 4 THR D 191 PRO D 192 0 -4.51 CRYST1 110.765 110.765 61.762 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009028 0.005212 0.000000 0.00000 SCALE2 0.000000 0.010425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016191 0.00000