data_2ADW # _entry.id 2ADW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.332 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ADW NDB DD0073 RCSB RCSB033778 WWPDB D_1000033778 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 185D unspecified 'SOLUTION STRUCTURE OF D(GACGTC) COMPLEXED WITH TRIOSTIN A' PDB 193D unspecified 'SOLUTION STRUCTURE OF D(ACACGTGT) COMPLEXED WITH QUINOMYCIN UK-6305' PDB 1PFE unspecified 'CRYSTAL STRUCTURE OF D(GCGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P6322' PDB 1VS2 unspecified 'CRYSTAL STRUCTURE OF D(GCGTACGC) COMPLEXED WITH TRIOSIN A' PDB 1XVK unspecified 'CRYSTAL STRUCTURE OF D(GCGTACGC) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632' PDB 1XVN unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632' PDB 1XVR unspecified 'CRYSTAL STRUCTURE OF D(CGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP C21' PDB 2DA8 unspecified 'SOLUTION STRUCTURE OF D(GATATC) COMPLEXED WITH A MODIFIED TRIOSTIN A AT POSITIONS 4 AND 8' PDB 3GO3 unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P41212' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ADW _pdbx_database_status.recvd_initial_deposition_date 2005-07-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Cuesta-Seijo, J.A.' 1 ? 'Sheldrick, G.M.' 2 ? # _citation.id primary _citation.title 'Serendipitous Sad Phasing of an Echinomycin-(Acgtacgt)2 Bisintercalation Complex.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 62 _citation.page_first 417 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16552143 _citation.pdbx_database_id_DOI 10.1107/S0907444906003763 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cuesta-Seijo, J.A.' 1 ? primary 'Weiss, M.S.' 2 ? primary 'Sheldrick, G.M.' 3 ? # _cell.entry_id 2ADW _cell.length_a 80.904 _cell.length_b 80.904 _cell.length_c 48.194 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ADW _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3'" 2426.617 4 ? ? ? ? 2 polymer nat ECHINOMYCIN 809.008 4 ? ? ? ? 3 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ? 4 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 6 non-polymer syn 2-CARBOXYQUINOXALINE 174.156 8 ? ? ? ? 7 water nat water 18.015 86 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'QUINOMYCIN A' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DT)(DA)(DC)(DG)(DT)' ACGTACGT A,C,E,G ? 2 'polypeptide(L)' no yes '(DSN)A(N2C)(MVA)(DSN)A(NCY)(MVA)' SAXVSAXV H,I,J,K ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DC n 1 7 DG n 1 8 DT n 2 1 DSN n 2 2 ALA n 2 3 N2C y 2 3 NCY y 2 4 MVA n 2 5 DSN n 2 6 ALA n 2 7 NCY y 2 7 N2C y 2 8 MVA n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'STREPTOMYCES ECHINATUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 67293 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2ADW 1 ? ? 2ADW ? 2 NOR NOR01126 2 ? ? NOR01126 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ADW A 1 ? 8 ? 2ADW 1 ? 8 ? 1 8 2 1 2ADW C 1 ? 8 ? 2ADW 101 ? 108 ? 101 108 3 1 2ADW E 1 ? 8 ? 2ADW 201 ? 208 ? 201 208 4 1 2ADW G 1 ? 8 ? 2ADW 301 ? 308 ? 301 308 5 2 2ADW H 1 ? 8 ? NOR01126 1 ? 8 ? 1 8 6 2 2ADW I 1 ? 8 ? NOR01126 1 ? 8 ? 1 8 7 2 2ADW J 1 ? 8 ? NOR01126 1 ? 8 ? 1 8 8 2 2ADW K 1 ? 8 ? NOR01126 1 ? 8 ? 1 8 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 5 2ADW N2C H 3 ? NOR NOR01126 NCY 3 microheterogeneity 3 1 5 2ADW NCY H 7 ? NOR NOR01126 N2C 7 microheterogeneity 7 2 6 2ADW N2C I 3 ? NOR NOR01126 NCY 3 microheterogeneity 3 3 6 2ADW NCY I 7 ? NOR NOR01126 N2C 7 microheterogeneity 7 4 7 2ADW N2C J 3 ? NOR NOR01126 NCY 3 microheterogeneity 3 5 7 2ADW NCY J 7 ? NOR NOR01126 N2C 7 microheterogeneity 7 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 N2C 'L-peptide linking' . N,S-DIMETHYLCYSTEINE ? 'C5 H11 N O2 S' 149.211 NCY 'L-peptide linking' . N-METHYLCYSTEINE ? 'C4 H9 N O2 S' 135.185 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 QUI non-polymer . 2-CARBOXYQUINOXALINE ? 'C9 H6 N2 O2' 174.156 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2ADW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_percent_sol 51.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PEG 200, PEG3350, MES, SPERMINE, PH 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K' # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 200' ? ? ? 1 2 1 PEG3350 ? ? ? 1 3 1 MES ? ? ? 1 4 1 spermine ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'PEG 200' ? ? ? 1 7 2 PEG3350 ? ? ? 1 8 2 MES ? ? ? 1 9 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-11-12 _diffrn_detector.details 'DOUBLE CRYSTAL MONOCHROMATOR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength 0.9000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2ADW _reflns.observed_criterion_sigma_I -99.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.600 _reflns.number_obs 21134 _reflns.number_all ? _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.07160 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.7000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.420 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.70 _reflns_shell.percent_possible_all 96.3 _reflns_shell.Rmerge_I_obs 0.39410 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.330 _reflns_shell.pdbx_redundancy 10.07 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2ADW _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 21134 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F -99.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 97.6 _refine.ls_R_factor_obs 0.180 _refine.ls_R_factor_all 0.180 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.221 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 2103 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'CGLS SHELX REFINEMENT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER. PARKINSON' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2ADW _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 17 _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 250 _refine_hist.pdbx_number_atoms_nucleic_acid 644 _refine_hist.pdbx_number_atoms_ligand 110 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 1090 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 30.00 # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 2ADW _pdbx_refine.R_factor_all_no_cutoff 0.180 _pdbx_refine.R_factor_obs_no_cutoff 0.180 _pdbx_refine.free_R_factor_no_cutoff 0.221 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff 2103 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 2ADW _struct.title 'Crystal structure of Echinomycin-(ACGTACGT)2 solved by SAD' _struct.pdbx_descriptor 'ECHINOMYCIN/DNA Complex, 2-CARBOXYQUINOXALINE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ADW _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC _struct_keywords.text 'DNA-ANTIBIOTIC COMPLEX, BISINTERCALATOR, HOOGSTEEN BASEPAIR, DEPSIPEPTIDE, QUINOXALINE, THIOACETAL, ANTIBIOTIC, ANTITUMOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 4 ? K N N 5 ? L N N 6 ? M N N 6 ? N N N 6 ? O N N 6 ? P N N 6 ? Q N N 6 ? R N N 6 ? S N N 6 ? T N N 7 ? U N N 7 ? V N N 7 ? W N N 7 ? X N N 7 ? Y N N 7 ? Z N N 7 ? AA N N 7 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? L QUI . C ? ? ? 1_555 E DSN 1 N ? ? H QUI 0 H DSN 1 1_555 ? ? ? ? ? ? ? 1.369 ? ? covale2 covale both ? E DSN 1 C ? ? ? 1_555 E ALA 2 N ? ? H DSN 1 H ALA 2 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale one ? E DSN 1 OG ? ? ? 1_555 E MVA 8 C ? ? H DSN 1 H MVA 8 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale4 covale one ? E ALA 2 C ? ? ? 1_555 E N2C 3 N A ? H ALA 2 H N2C 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale one ? E ALA 2 C ? ? ? 1_555 E NCY 3 N B ? H ALA 2 H NCY 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? E N2C 3 C A ? ? 1_555 E MVA 4 N ? ? H N2C 3 H MVA 4 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale7 covale both ? E NCY 3 C B ? ? 1_555 E MVA 4 N ? ? H NCY 3 H MVA 4 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale8 covale none ? E N2C 3 SG A ? ? 1_555 E NCY 7 CB A ? H N2C 3 H NCY 7 1_555 ? ? ? ? ? ? ? 1.809 ? ? covale9 covale none ? E NCY 3 CB B ? ? 1_555 E N2C 7 SG B ? H NCY 3 H N2C 7 1_555 ? ? ? ? ? ? ? 1.805 ? ? covale10 covale one ? E MVA 4 C ? ? ? 1_555 E DSN 5 OG ? ? H MVA 4 H DSN 5 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale11 covale both ? E DSN 5 C ? ? ? 1_555 E ALA 6 N ? ? H DSN 5 H ALA 6 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale12 covale both ? E DSN 5 N ? ? ? 1_555 M QUI . C ? ? H DSN 5 H QUI 9 1_555 ? ? ? ? ? ? ? 1.371 ? ? covale13 covale one ? E ALA 6 C ? ? ? 1_555 E NCY 7 N A ? H ALA 6 H NCY 7 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale14 covale one ? E ALA 6 C ? ? ? 1_555 E N2C 7 N B ? H ALA 6 H N2C 7 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale15 covale both ? E NCY 7 C A ? ? 1_555 E MVA 8 N ? ? H NCY 7 H MVA 8 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale16 covale both ? E N2C 7 C B ? ? 1_555 E MVA 8 N ? ? H N2C 7 H MVA 8 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale17 covale both ? N QUI . C ? ? ? 1_555 F DSN 1 N ? ? I QUI 0 I DSN 1 1_555 ? ? ? ? ? ? ? 1.364 ? ? covale18 covale both ? F DSN 1 C ? ? ? 1_555 F ALA 2 N ? ? I DSN 1 I ALA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale19 covale one ? F DSN 1 OG ? ? ? 1_555 F MVA 8 C ? ? I DSN 1 I MVA 8 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale20 covale one ? F ALA 2 C ? ? ? 1_555 F NCY 3 N B ? I ALA 2 I NCY 3 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale21 covale one ? F ALA 2 C ? ? ? 1_555 F N2C 3 N A ? I ALA 2 I N2C 3 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale22 covale both ? F NCY 3 C B ? ? 1_555 F MVA 4 N ? ? I NCY 3 I MVA 4 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale23 covale both ? F N2C 3 C A ? ? 1_555 F MVA 4 N ? ? I N2C 3 I MVA 4 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale24 covale none ? F NCY 3 SG B ? ? 1_555 F N2C 7 CB B ? I NCY 3 I N2C 7 1_555 ? ? ? ? ? ? ? 1.807 ? ? covale25 covale none ? F N2C 3 CB A ? ? 1_555 F NCY 7 SG A ? I N2C 3 I NCY 7 1_555 ? ? ? ? ? ? ? 1.811 ? ? covale26 covale one ? F MVA 4 C ? ? ? 1_555 F DSN 5 OG ? ? I MVA 4 I DSN 5 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale27 covale both ? F DSN 5 C ? ? ? 1_555 F ALA 6 N ? ? I DSN 5 I ALA 6 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale28 covale both ? F DSN 5 N ? ? ? 1_555 O QUI . C ? ? I DSN 5 I QUI 9 1_555 ? ? ? ? ? ? ? 1.364 ? ? covale29 covale one ? F ALA 6 C ? ? ? 1_555 F N2C 7 N B ? I ALA 6 I N2C 7 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale30 covale one ? F ALA 6 C ? ? ? 1_555 F NCY 7 N A ? I ALA 6 I NCY 7 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale31 covale both ? F N2C 7 C B ? ? 1_555 F MVA 8 N ? ? I N2C 7 I MVA 8 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale32 covale both ? F NCY 7 C A ? ? 1_555 F MVA 8 N ? ? I NCY 7 I MVA 8 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale33 covale both ? P QUI . C ? ? ? 1_555 G DSN 1 N ? ? J QUI 0 J DSN 1 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale34 covale both ? G DSN 1 C ? ? ? 1_555 G ALA 2 N ? ? J DSN 1 J ALA 2 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale35 covale one ? G DSN 1 OG ? ? ? 1_555 G MVA 8 C ? ? J DSN 1 J MVA 8 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale36 covale one ? G ALA 2 C ? ? ? 1_555 G N2C 3 N A ? J ALA 2 J N2C 3 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale37 covale one ? G ALA 2 C ? ? ? 1_555 G NCY 3 N B ? J ALA 2 J NCY 3 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale38 covale both ? G N2C 3 C A ? ? 1_555 G MVA 4 N ? ? J N2C 3 J MVA 4 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale39 covale both ? G NCY 3 C B ? ? 1_555 G MVA 4 N ? ? J NCY 3 J MVA 4 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale40 covale none ? G N2C 3 CB A ? ? 1_555 G NCY 7 SG A ? J N2C 3 J NCY 7 1_555 ? ? ? ? ? ? ? 1.798 ? ? covale41 covale none ? G NCY 3 SG B ? ? 1_555 G N2C 7 CB B ? J NCY 3 J N2C 7 1_555 ? ? ? ? ? ? ? 1.801 ? ? covale42 covale one ? G MVA 4 C ? ? ? 1_555 G DSN 5 OG ? ? J MVA 4 J DSN 5 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale43 covale both ? G DSN 5 C ? ? ? 1_555 G ALA 6 N ? ? J DSN 5 J ALA 6 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale44 covale both ? G DSN 5 N ? ? ? 1_555 Q QUI . C ? ? J DSN 5 J QUI 9 1_555 ? ? ? ? ? ? ? 1.366 ? ? covale45 covale one ? G ALA 6 C ? ? ? 1_555 G N2C 7 N B ? J ALA 6 J N2C 7 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale46 covale one ? G ALA 6 C ? ? ? 1_555 G NCY 7 N A ? J ALA 6 J NCY 7 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale47 covale both ? G N2C 7 C B ? ? 1_555 G MVA 8 N ? ? J N2C 7 J MVA 8 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale48 covale both ? G NCY 7 C A ? ? 1_555 G MVA 8 N ? ? J NCY 7 J MVA 8 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale49 covale both ? R QUI . C ? ? ? 1_555 H DSN 1 N ? ? K QUI 0 K DSN 1 1_555 ? ? ? ? ? ? ? 1.382 ? ? covale50 covale both ? H DSN 1 C ? ? ? 1_555 H ALA 2 N ? ? K DSN 1 K ALA 2 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale51 covale one ? H DSN 1 OG ? ? ? 1_555 H MVA 8 C ? ? K DSN 1 K MVA 8 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale52 covale one ? H ALA 2 C ? ? ? 1_555 H N2C 3 N ? ? K ALA 2 K N2C 3 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale53 covale both ? H N2C 3 C ? ? ? 1_555 H MVA 4 N ? ? K N2C 3 K MVA 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale54 covale none ? H N2C 3 CB ? ? ? 1_555 H NCY 7 SG ? ? K N2C 3 K NCY 7 1_555 ? ? ? ? ? ? ? 1.825 ? ? covale55 covale one ? H MVA 4 C ? ? ? 1_555 H DSN 5 OG ? ? K MVA 4 K DSN 5 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale56 covale both ? H DSN 5 C ? ? ? 1_555 H ALA 6 N ? ? K DSN 5 K ALA 6 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale57 covale both ? H DSN 5 N ? ? ? 1_555 S QUI . C ? ? K DSN 5 K QUI 9 1_555 ? ? ? ? ? ? ? 1.371 ? ? covale58 covale one ? H ALA 6 C ? ? ? 1_555 H NCY 7 N ? ? K ALA 6 K NCY 7 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale59 covale both ? H NCY 7 C ? ? ? 1_555 H MVA 8 N ? ? K NCY 7 K MVA 8 1_555 ? ? ? ? ? ? ? 1.328 ? ? metalc1 metalc ? ? A DG 7 N7 ? ? ? 6_555 J NI . NI A ? A DG 7 E NI 400 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc2 metalc ? ? A DG 7 N7 ? ? ? 6_555 K ZN . ZN B ? A DG 7 E ZN 401 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc3 metalc ? ? C DG 7 N7 ? ? ? 1_555 J NI . NI A ? E DG 207 E NI 400 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc4 metalc ? ? C DG 7 N7 ? ? ? 1_555 K ZN . ZN B ? E DG 207 E ZN 401 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc5 metalc ? ? J NI . NI A ? ? 1_555 V HOH . O ? ? E NI 400 E HOH 2032 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc6 metalc ? ? J NI . NI A ? ? 1_555 V HOH . O ? ? E NI 400 E HOH 2033 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc7 metalc ? ? J NI . NI A ? ? 1_555 V HOH . O ? ? E NI 400 E HOH 2034 1_555 ? ? ? ? ? ? ? 2.128 ? ? metalc8 metalc ? ? J NI . NI A ? ? 1_555 V HOH . O ? ? E NI 400 E HOH 2035 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc9 metalc ? ? K ZN . ZN B ? ? 1_555 V HOH . O ? ? E ZN 401 E HOH 2032 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc10 metalc ? ? K ZN . ZN B ? ? 1_555 V HOH . O ? ? E ZN 401 E HOH 2033 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc11 metalc ? ? K ZN . ZN B ? ? 1_555 V HOH . O ? ? E ZN 401 E HOH 2034 1_555 ? ? ? ? ? ? ? 2.128 ? ? metalc12 metalc ? ? K ZN . ZN B ? ? 1_555 V HOH . O ? ? E ZN 401 E HOH 2035 1_555 ? ? ? ? ? ? ? 2.107 ? ? hydrog1 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 1 C DT 108 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog2 hydrog ? ? A DA 1 N7 ? ? ? 1_555 B DT 8 N3 ? ? A DA 1 C DT 108 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 2 C DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 2 C DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 2 C DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 C DC 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 C DC 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 C DC 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 4 C DA 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 4 C DA 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 5 C DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 5 C DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 C DG 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 C DG 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 C DG 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 7 C DC 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 7 C DC 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 7 C DC 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 8 C DA 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 8 C DA 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DT 8 O4 ? ? E DA 201 G DT 308 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog22 hydrog ? ? C DA 1 N7 ? ? ? 1_555 D DT 8 N3 ? ? E DA 201 G DT 308 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog23 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 7 N1 ? ? E DC 202 G DG 307 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 7 O6 ? ? E DC 202 G DG 307 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 7 N2 ? ? E DC 202 G DG 307 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 6 N3 ? ? E DG 203 G DC 306 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 6 O2 ? ? E DG 203 G DC 306 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 6 N4 ? ? E DG 203 G DC 306 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 5 N7 ? ? E DT 204 G DA 305 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog30 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 5 N6 ? ? E DT 204 G DA 305 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog31 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 4 O4 ? ? E DA 205 G DT 304 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog32 hydrog ? ? C DA 5 N7 ? ? ? 1_555 D DT 4 N3 ? ? E DA 205 G DT 304 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog33 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 3 N1 ? ? E DC 206 G DG 303 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 3 O6 ? ? E DC 206 G DG 303 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 3 N2 ? ? E DC 206 G DG 303 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 2 N3 ? ? E DG 207 G DC 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 2 O2 ? ? E DG 207 G DC 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 2 N4 ? ? E DG 207 G DC 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 1 N7 ? ? E DT 208 G DA 301 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog40 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 1 N6 ? ? E DT 208 G DA 301 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software E NI 400 ? 6 'BINDING SITE FOR RESIDUE NI E 400' AC2 Software E ZN 401 ? 6 'BINDING SITE FOR RESIDUE ZN E 401' AC3 Software C MES 406 ? 7 'BINDING SITE FOR RESIDUE MES C 406' AC4 Software ? ? ? ? 11 'BINDING SITE FOR LINKED RESIDUES H 0 to 9' AC5 Software ? ? ? ? 19 'BINDING SITE FOR LINKED RESIDUES I 0 to 9' AC6 Software ? ? ? ? 15 'BINDING SITE FOR LINKED RESIDUES J 0 to 9' AC7 Software ? ? ? ? 15 'BINDING SITE FOR LINKED RESIDUES K 0 to 9' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 7 ? DG A 7 . ? 6_555 ? 2 AC1 6 DG C 7 ? DG E 207 . ? 1_555 ? 3 AC1 6 HOH V . ? HOH E 2032 . ? 1_555 ? 4 AC1 6 HOH V . ? HOH E 2033 . ? 1_555 ? 5 AC1 6 HOH V . ? HOH E 2034 . ? 1_555 ? 6 AC1 6 HOH V . ? HOH E 2035 . ? 1_555 ? 7 AC2 6 DG A 7 ? DG A 7 . ? 6_555 ? 8 AC2 6 DG C 7 ? DG E 207 . ? 1_555 ? 9 AC2 6 HOH V . ? HOH E 2032 . ? 1_555 ? 10 AC2 6 HOH V . ? HOH E 2033 . ? 1_555 ? 11 AC2 6 HOH V . ? HOH E 2034 . ? 1_555 ? 12 AC2 6 HOH V . ? HOH E 2035 . ? 1_555 ? 13 AC3 7 DC B 6 ? DC C 106 . ? 1_555 ? 14 AC3 7 DG B 7 ? DG C 107 . ? 1_555 ? 15 AC3 7 QUI M . ? QUI H 9 . ? 1_555 ? 16 AC3 7 DSN F 1 ? DSN I 1 . ? 3_555 ? 17 AC3 7 N2C F 3 ? N2C I 3 . ? 3_555 ? 18 AC3 7 NCY F 7 ? NCY I 7 . ? 3_555 ? 19 AC3 7 MVA F 8 ? MVA I 8 . ? 3_555 ? 20 AC4 11 DA A 1 ? DA A 1 . ? 1_555 ? 21 AC4 11 DC A 2 ? DC A 2 . ? 1_555 ? 22 AC4 11 DG A 3 ? DG A 3 . ? 1_555 ? 23 AC4 11 DT A 4 ? DT A 4 . ? 1_555 ? 24 AC4 11 DA B 5 ? DA C 105 . ? 1_555 ? 25 AC4 11 DC B 6 ? DC C 106 . ? 1_555 ? 26 AC4 11 DG B 7 ? DG C 107 . ? 1_555 ? 27 AC4 11 DT B 8 ? DT C 108 . ? 1_555 ? 28 AC4 11 MES I . ? MES C 406 . ? 1_555 ? 29 AC4 11 HOH X . ? HOH H 2002 . ? 1_555 ? 30 AC4 11 HOH X . ? HOH H 2004 . ? 1_555 ? 31 AC5 19 DA A 5 ? DA A 5 . ? 1_555 ? 32 AC5 19 DC A 6 ? DC A 6 . ? 1_555 ? 33 AC5 19 DG A 7 ? DG A 7 . ? 1_555 ? 34 AC5 19 DT A 8 ? DT A 8 . ? 1_555 ? 35 AC5 19 HOH T . ? HOH A 2015 . ? 1_555 ? 36 AC5 19 DA B 1 ? DA C 101 . ? 1_555 ? 37 AC5 19 DC B 2 ? DC C 102 . ? 1_555 ? 38 AC5 19 DG B 3 ? DG C 103 . ? 1_555 ? 39 AC5 19 DT B 4 ? DT C 104 . ? 1_555 ? 40 AC5 19 MES I . ? MES C 406 . ? 4_454 ? 41 AC5 19 DA C 1 ? DA E 201 . ? 4_454 ? 42 AC5 19 DT D 8 ? DT G 308 . ? 4_454 ? 43 AC5 19 HOH W . ? HOH G 2007 . ? 4_454 ? 44 AC5 19 HOH Y . ? HOH I 2001 . ? 1_555 ? 45 AC5 19 HOH Y . ? HOH I 2002 . ? 1_555 ? 46 AC5 19 DSN H 1 ? DSN K 1 . ? 4_454 ? 47 AC5 19 N2C H 3 ? N2C K 3 . ? 4_454 ? 48 AC5 19 NCY H 7 ? NCY K 7 . ? 4_454 ? 49 AC5 19 MVA H 8 ? MVA K 8 . ? 4_454 ? 50 AC6 15 DT A 8 ? DT A 8 . ? 3_556 ? 51 AC6 15 DA B 1 ? DA C 101 . ? 3_556 ? 52 AC6 15 DA C 5 ? DA E 205 . ? 1_555 ? 53 AC6 15 DC C 6 ? DC E 206 . ? 1_555 ? 54 AC6 15 DG C 7 ? DG E 207 . ? 1_555 ? 55 AC6 15 DT C 8 ? DT E 208 . ? 1_555 ? 56 AC6 15 HOH V . ? HOH E 2034 . ? 1_555 ? 57 AC6 15 DA D 1 ? DA G 301 . ? 1_555 ? 58 AC6 15 DC D 2 ? DC G 302 . ? 1_555 ? 59 AC6 15 DG D 3 ? DG G 303 . ? 1_555 ? 60 AC6 15 DT D 4 ? DT G 304 . ? 1_555 ? 61 AC6 15 HOH Z . ? HOH J 2001 . ? 1_555 ? 62 AC6 15 HOH Z . ? HOH J 2002 . ? 1_555 ? 63 AC6 15 HOH Z . ? HOH J 2003 . ? 1_555 ? 64 AC6 15 HOH Z . ? HOH J 2004 . ? 1_555 ? 65 AC7 15 DC A 6 ? DC A 6 . ? 3_555 ? 66 AC7 15 DA C 1 ? DA E 201 . ? 1_555 ? 67 AC7 15 DC C 2 ? DC E 202 . ? 1_555 ? 68 AC7 15 DG C 3 ? DG E 203 . ? 1_555 ? 69 AC7 15 DT C 4 ? DT E 204 . ? 1_555 ? 70 AC7 15 DA D 5 ? DA G 305 . ? 1_555 ? 71 AC7 15 DC D 6 ? DC G 306 . ? 1_555 ? 72 AC7 15 DG D 7 ? DG G 307 . ? 1_555 ? 73 AC7 15 DT D 8 ? DT G 308 . ? 1_555 ? 74 AC7 15 N2C F 3 ? N2C I 3 . ? 3_555 ? 75 AC7 15 MVA F 4 ? MVA I 4 . ? 3_555 ? 76 AC7 15 HOH AA . ? HOH K 2001 . ? 1_555 ? 77 AC7 15 HOH AA . ? HOH K 2002 . ? 1_555 ? 78 AC7 15 HOH AA . ? HOH K 2005 . ? 1_555 ? 79 AC7 15 HOH AA . ? HOH K 2006 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ADW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ADW _atom_sites.fract_transf_matrix[1][1] 0.012360 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012360 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020749 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NI O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n B 1 1 DA 1 101 101 DA DA C . n B 1 2 DC 2 102 102 DC DC C . n B 1 3 DG 3 103 103 DG DG C . n B 1 4 DT 4 104 104 DT DT C . n B 1 5 DA 5 105 105 DA DA C . n B 1 6 DC 6 106 106 DC DC C . n B 1 7 DG 7 107 107 DG DG C . n B 1 8 DT 8 108 108 DT DT C . n C 1 1 DA 1 201 201 DA DA E . n C 1 2 DC 2 202 202 DC DC E . n C 1 3 DG 3 203 203 DG DG E . n C 1 4 DT 4 204 204 DT DT E . n C 1 5 DA 5 205 205 DA DA E . n C 1 6 DC 6 206 206 DC DC E . n C 1 7 DG 7 207 207 DG DG E . n C 1 8 DT 8 208 208 DT DT E . n D 1 1 DA 1 301 301 DA DA G . n D 1 2 DC 2 302 302 DC DC G . n D 1 3 DG 3 303 303 DG DG G . n D 1 4 DT 4 304 304 DT DT G . n D 1 5 DA 5 305 305 DA DA G . n D 1 6 DC 6 306 306 DC DC G . n D 1 7 DG 7 307 307 DG DG G . n D 1 8 DT 8 308 308 DT DT G . n E 2 1 DSN 1 1 1 DSN DSN H . n E 2 2 ALA 2 2 2 ALA ALA H . n E 2 3 N2C 3 3 3 N2C N2C H . y E 2 3 NCY 3 3 3 NCY NCY H . y E 2 4 MVA 4 4 4 MVA MVA H . n E 2 5 DSN 5 5 5 DSN DSN H . n E 2 6 ALA 6 6 6 ALA ALA H . n E 2 7 NCY 7 7 7 NCY NCY H . y E 2 7 N2C 7 7 7 N2C N2C H . y E 2 8 MVA 8 8 8 MVA MVA H . n F 2 1 DSN 1 1 1 DSN DSN I . n F 2 2 ALA 2 2 2 ALA ALA I . n F 2 3 N2C 3 3 3 N2C N2C I . y F 2 3 NCY 3 3 3 NCY NCY I . y F 2 4 MVA 4 4 4 MVA MVA I . n F 2 5 DSN 5 5 5 DSN DSN I . n F 2 6 ALA 6 6 6 ALA ALA I . n F 2 7 NCY 7 7 7 NCY NCY I . y F 2 7 N2C 7 7 7 N2C N2C I . y F 2 8 MVA 8 8 8 MVA MVA I . n G 2 1 DSN 1 1 1 DSN DSN J . n G 2 2 ALA 2 2 2 ALA ALA J . n G 2 3 N2C 3 3 3 N2C N2C J . y G 2 3 NCY 3 3 3 NCY NCY J . y G 2 4 MVA 4 4 4 MVA MVA J . n G 2 5 DSN 5 5 5 DSN DSN J . n G 2 6 ALA 6 6 6 ALA ALA J . n G 2 7 NCY 7 7 7 NCY NCY J . y G 2 7 N2C 7 7 7 N2C N2C J . y G 2 8 MVA 8 8 8 MVA MVA J . n H 2 1 DSN 1 1 1 DSN DSN K . n H 2 2 ALA 2 2 2 ALA ALA K . n H 2 3 N2C 3 3 3 N2C N2C K . y H 2 4 MVA 4 4 4 MVA MVA K . n H 2 5 DSN 5 5 5 DSN DSN K . n H 2 6 ALA 6 6 6 ALA ALA K . n H 2 7 NCY 7 7 7 NCY NCY K . y H 2 8 MVA 8 8 8 MVA MVA K . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MES 1 406 406 MES MES C . J 4 NI 1 400 400 NI NI E . K 5 ZN 1 401 401 ZN ZN E . L 6 QUI 1 0 0 QUI QUI H . M 6 QUI 1 9 9 QUI QUI H . N 6 QUI 1 0 0 QUI QUI I . O 6 QUI 1 9 9 QUI QUI I . P 6 QUI 1 0 0 QUI QUI J . Q 6 QUI 1 9 9 QUI QUI J . R 6 QUI 1 0 0 QUI QUI K . S 6 QUI 1 9 9 QUI QUI K . T 7 HOH 1 2001 2001 HOH HOH A . T 7 HOH 2 2002 2002 HOH HOH A . T 7 HOH 3 2003 2003 HOH HOH A . T 7 HOH 4 2004 2004 HOH HOH A . T 7 HOH 5 2005 2005 HOH HOH A . T 7 HOH 6 2006 2006 HOH HOH A . T 7 HOH 7 2007 2007 HOH HOH A . T 7 HOH 8 2008 2008 HOH HOH A . T 7 HOH 9 2009 2009 HOH HOH A . T 7 HOH 10 2010 2010 HOH HOH A . T 7 HOH 11 2011 2011 HOH HOH A . T 7 HOH 12 2012 2012 HOH HOH A . T 7 HOH 13 2013 2013 HOH HOH A . T 7 HOH 14 2014 2014 HOH HOH A . T 7 HOH 15 2015 2015 HOH HOH A . U 7 HOH 1 2001 2001 HOH HOH C . U 7 HOH 2 2002 2002 HOH HOH C . U 7 HOH 3 2003 2003 HOH HOH C . U 7 HOH 4 2004 2004 HOH HOH C . U 7 HOH 5 2005 2005 HOH HOH C . U 7 HOH 6 2006 2006 HOH HOH C . U 7 HOH 7 2007 2007 HOH HOH C . U 7 HOH 8 2008 2008 HOH HOH C . U 7 HOH 9 2009 2009 HOH HOH C . U 7 HOH 10 2010 2010 HOH HOH C . V 7 HOH 1 2001 2001 HOH HOH E . V 7 HOH 2 2002 2002 HOH HOH E . V 7 HOH 3 2003 2003 HOH HOH E . V 7 HOH 4 2004 2004 HOH HOH E . V 7 HOH 5 2005 2005 HOH HOH E . V 7 HOH 6 2006 2006 HOH HOH E . V 7 HOH 7 2007 2007 HOH HOH E . V 7 HOH 8 2008 2008 HOH HOH E . V 7 HOH 9 2009 2009 HOH HOH E . V 7 HOH 10 2010 2010 HOH HOH E . V 7 HOH 11 2011 2011 HOH HOH E . V 7 HOH 12 2012 2012 HOH HOH E . V 7 HOH 13 2013 2013 HOH HOH E . V 7 HOH 14 2014 2014 HOH HOH E . V 7 HOH 15 2015 2015 HOH HOH E . V 7 HOH 16 2016 2016 HOH HOH E . V 7 HOH 17 2017 2017 HOH HOH E . V 7 HOH 18 2018 2018 HOH HOH E . V 7 HOH 19 2019 2019 HOH HOH E . V 7 HOH 20 2020 2020 HOH HOH E . V 7 HOH 21 2021 2021 HOH HOH E . V 7 HOH 22 2022 2022 HOH HOH E . V 7 HOH 23 2023 2023 HOH HOH E . V 7 HOH 24 2024 2024 HOH HOH E . V 7 HOH 25 2025 2025 HOH HOH E . V 7 HOH 26 2026 2026 HOH HOH E . V 7 HOH 27 2027 2027 HOH HOH E . V 7 HOH 28 2028 2028 HOH HOH E . V 7 HOH 29 2029 2029 HOH HOH E . V 7 HOH 30 2030 2030 HOH HOH E . V 7 HOH 31 2031 2031 HOH HOH E . V 7 HOH 32 2032 2032 HOH HOH E . V 7 HOH 33 2033 2033 HOH HOH E . V 7 HOH 34 2034 2034 HOH HOH E . V 7 HOH 35 2035 2035 HOH HOH E . W 7 HOH 1 2001 2001 HOH HOH G . W 7 HOH 2 2002 2002 HOH HOH G . W 7 HOH 3 2003 2003 HOH HOH G . W 7 HOH 4 2004 2004 HOH HOH G . W 7 HOH 5 2005 2005 HOH HOH G . W 7 HOH 6 2006 2006 HOH HOH G . W 7 HOH 7 2007 2007 HOH HOH G . W 7 HOH 8 2008 2008 HOH HOH G . W 7 HOH 9 2009 2009 HOH HOH G . X 7 HOH 1 2001 2001 HOH HOH H . X 7 HOH 2 2002 2002 HOH HOH H . X 7 HOH 3 2003 2003 HOH HOH H . X 7 HOH 4 2004 2004 HOH HOH H . Y 7 HOH 1 2001 2001 HOH HOH I . Y 7 HOH 2 2002 2002 HOH HOH I . Z 7 HOH 1 2001 2001 HOH HOH J . Z 7 HOH 2 2002 2002 HOH HOH J . Z 7 HOH 3 2003 2003 HOH HOH J . Z 7 HOH 4 2004 2004 HOH HOH J . Z 7 HOH 5 2005 2005 HOH HOH J . AA 7 HOH 1 2001 2001 HOH HOH K . AA 7 HOH 2 2002 2002 HOH HOH K . AA 7 HOH 3 2003 2003 HOH HOH K . AA 7 HOH 4 2004 2004 HOH HOH K . AA 7 HOH 5 2005 2005 HOH HOH K . AA 7 HOH 6 2006 2006 HOH HOH K . # _pdbx_molecule_features.prd_id PRD_000491 _pdbx_molecule_features.name Echinomycin _pdbx_molecule_features.type 'Cyclic depsipeptide' _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE. BICYCLIZATION IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI, AND A THIOACETAL BOND BETWEEN RESIDUES 3 AND 7. THE TWO QUINOXALINE CHROMOPHORES ARE LINKED TO THE D-SERINE RESIDUES, RESIDUES 1 AND 5. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000491 H 1 PRD_000491 R 1 PRD_000491 S # _struct_site_keywords.site_id 1 _struct_site_keywords.text BIS-INTERCALATION # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 C,D,G,H,J,K,P,Q,R,S,V,W,Z,AA 2 1 A,B,E,F,I,L,M,N,O,T,U,X,Y # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 730 ? 1 MORE -5.7 ? 1 'SSA (A^2)' 4280 ? 2 'ABSA (A^2)' 740 ? 2 MORE -3.9 ? 2 'SSA (A^2)' 3940 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 E HOH 2014 ? V HOH . 2 1 E HOH 2028 ? V HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 7 ? A DG 7 ? 6_555 NI A J NI . ? E NI 400 ? 1_555 N7 ? C DG 7 ? E DG 207 ? 1_555 176.2 ? 2 N7 ? A DG 7 ? A DG 7 ? 6_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2032 ? 1_555 92.7 ? 3 N7 ? C DG 7 ? E DG 207 ? 1_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2032 ? 1_555 89.1 ? 4 N7 ? A DG 7 ? A DG 7 ? 6_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2033 ? 1_555 89.0 ? 5 N7 ? C DG 7 ? E DG 207 ? 1_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2033 ? 1_555 87.8 ? 6 O ? V HOH . ? E HOH 2032 ? 1_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2033 ? 1_555 86.7 ? 7 N7 ? A DG 7 ? A DG 7 ? 6_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2034 ? 1_555 90.2 ? 8 N7 ? C DG 7 ? E DG 207 ? 1_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2034 ? 1_555 93.2 ? 9 O ? V HOH . ? E HOH 2032 ? 1_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2034 ? 1_555 87.5 ? 10 O ? V HOH . ? E HOH 2033 ? 1_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2034 ? 1_555 174.0 ? 11 N7 ? A DG 7 ? A DG 7 ? 6_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2035 ? 1_555 87.7 ? 12 N7 ? C DG 7 ? E DG 207 ? 1_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2035 ? 1_555 90.8 ? 13 O ? V HOH . ? E HOH 2032 ? 1_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2035 ? 1_555 173.7 ? 14 O ? V HOH . ? E HOH 2033 ? 1_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2035 ? 1_555 99.6 ? 15 O ? V HOH . ? E HOH 2034 ? 1_555 NI A J NI . ? E NI 400 ? 1_555 O ? V HOH . ? E HOH 2035 ? 1_555 86.3 ? 16 N7 ? A DG 7 ? A DG 7 ? 6_555 ZN B K ZN . ? E ZN 401 ? 1_555 N7 ? C DG 7 ? E DG 207 ? 1_555 176.2 ? 17 N7 ? A DG 7 ? A DG 7 ? 6_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2032 ? 1_555 92.7 ? 18 N7 ? C DG 7 ? E DG 207 ? 1_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2032 ? 1_555 89.1 ? 19 N7 ? A DG 7 ? A DG 7 ? 6_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2033 ? 1_555 89.0 ? 20 N7 ? C DG 7 ? E DG 207 ? 1_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2033 ? 1_555 87.8 ? 21 O ? V HOH . ? E HOH 2032 ? 1_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2033 ? 1_555 86.7 ? 22 N7 ? A DG 7 ? A DG 7 ? 6_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2034 ? 1_555 90.2 ? 23 N7 ? C DG 7 ? E DG 207 ? 1_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2034 ? 1_555 93.2 ? 24 O ? V HOH . ? E HOH 2032 ? 1_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2034 ? 1_555 87.5 ? 25 O ? V HOH . ? E HOH 2033 ? 1_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2034 ? 1_555 174.0 ? 26 N7 ? A DG 7 ? A DG 7 ? 6_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2035 ? 1_555 87.7 ? 27 N7 ? C DG 7 ? E DG 207 ? 1_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2035 ? 1_555 90.8 ? 28 O ? V HOH . ? E HOH 2032 ? 1_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2035 ? 1_555 173.7 ? 29 O ? V HOH . ? E HOH 2033 ? 1_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2035 ? 1_555 99.6 ? 30 O ? V HOH . ? E HOH 2034 ? 1_555 ZN B K ZN . ? E ZN 401 ? 1_555 O ? V HOH . ? E HOH 2035 ? 1_555 86.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-28 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2020-09-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' Advisory 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' pdbx_struct_conn_angle 2 6 'Structure model' pdbx_validate_polymer_linkage 3 6 'Structure model' struct 4 6 'Structure model' struct_conn 5 6 'Structure model' struct_conn_type 6 6 'Structure model' struct_ref_seq_dif 7 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 2 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 3 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 4 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 5 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.value' 14 6 'Structure model' '_struct.title' 15 6 'Structure model' '_struct_conn.conn_type_id' 16 6 'Structure model' '_struct_conn.id' 17 6 'Structure model' '_struct_conn.pdbx_dist_value' 18 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 6 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 20 6 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 21 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 6 'Structure model' '_struct_conn.ptnr1_symmetry' 29 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 6 'Structure model' '_struct_conn.ptnr2_symmetry' 37 6 'Structure model' '_struct_conn_type.id' 38 6 'Structure model' '_struct_ref_seq_dif.details' 39 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language SHELXD phasing . ? 1 ? ? ? ? SHELXE 'model building' . ? 2 ? ? ? ? SHELXL-97 refinement . ? 3 ? ? ? ? HKL-2000 'data reduction' . ? 4 ? ? ? ? XDS 'data scaling' . ? 5 ? ? ? ? # _pdbx_entry_details.entry_id 2ADW _pdbx_entry_details.compound_details ;THE ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE, A MEMBER OF THE QUINOXALINE CLASS OF ANTIBIOTICS. HERE, ECHINOMYCIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND TWO LIGANDS (HET) QUI. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 H _pdbx_validate_close_contact.auth_comp_id_1 DSN _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 H _pdbx_validate_close_contact.auth_comp_id_2 MVA _pdbx_validate_close_contact.auth_seq_id_2 8 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A DA 1 ? ? N3 A DA 1 ? ? C4 A DA 1 ? ? 107.35 110.60 -3.25 0.50 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 101.18 108.00 -6.82 0.70 N 3 1 "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? 102.38 109.40 -7.02 0.80 N 4 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.28 108.30 1.98 0.30 N 5 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 98.99 108.00 -9.01 0.70 N 6 1 "O4'" A DA 5 ? ? "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? 101.99 104.50 -2.51 0.40 N 7 1 C2 A DA 5 ? ? N3 A DA 5 ? ? C4 A DA 5 ? ? 107.34 110.60 -3.26 0.50 N 8 1 N3 A DA 5 ? ? C4 A DA 5 ? ? C5 A DA 5 ? ? 131.06 126.80 4.26 0.70 N 9 1 "O4'" C DA 101 ? A "C1'" C DA 101 ? A N9 C DA 101 ? ? 102.98 108.00 -5.02 0.70 N 10 1 "O5'" C DC 102 ? A "C5'" C DC 102 ? A "C4'" C DC 102 ? A 102.90 109.40 -6.50 0.80 N 11 1 "O4'" C DC 102 ? B "C4'" C DC 102 ? B "C3'" C DC 102 ? B 101.42 104.50 -3.08 0.40 N 12 1 "O4'" C DG 103 ? A "C1'" C DG 103 ? A N9 C DG 103 ? ? 111.25 108.30 2.95 0.30 N 13 1 "O4'" C DG 103 ? B "C1'" C DG 103 ? B N9 C DG 103 ? ? 111.53 108.30 3.23 0.30 N 14 1 "C3'" C DA 105 ? B "O3'" C DA 105 ? B P C DC 106 ? B 130.14 119.70 10.44 1.20 Y 15 1 "O4'" C DC 106 ? A "C1'" C DC 106 ? A N1 C DC 106 ? ? 103.26 108.00 -4.74 0.70 N 16 1 "O4'" C DG 107 ? ? "C1'" C DG 107 ? ? N9 C DG 107 ? ? 110.46 108.30 2.16 0.30 N 17 1 N1 C DG 107 ? ? C6 C DG 107 ? ? O6 C DG 107 ? ? 123.55 119.90 3.65 0.60 N 18 1 "O4'" C DT 108 ? ? "C1'" C DT 108 ? ? N1 C DT 108 ? ? 103.24 108.00 -4.76 0.70 N 19 1 "C3'" E DC 202 ? ? "O3'" E DC 202 ? ? P E DG 203 ? ? 128.64 119.70 8.94 1.20 Y 20 1 "O4'" E DT 204 ? ? "C1'" E DT 204 ? ? N1 E DT 204 ? ? 98.41 108.00 -9.59 0.70 N 21 1 N1 E DA 205 ? ? C6 E DA 205 ? ? N6 E DA 205 ? ? 123.31 118.60 4.71 0.60 N 22 1 "O4'" E DC 206 ? ? "C1'" E DC 206 ? ? N1 E DC 206 ? ? 101.26 108.00 -6.74 0.70 N 23 1 "O4'" G DA 301 ? ? "C1'" G DA 301 ? ? N9 G DA 301 ? ? 101.25 108.00 -6.75 0.70 N 24 1 "O4'" G DG 303 ? ? "C1'" G DG 303 ? ? N9 G DG 303 ? ? 114.53 108.30 6.23 0.30 N 25 1 "O4'" G DT 304 ? ? "C1'" G DT 304 ? ? N1 G DT 304 ? ? 99.29 108.00 -8.71 0.70 N 26 1 C2 G DA 305 ? ? N3 G DA 305 ? ? C4 G DA 305 ? ? 107.48 110.60 -3.12 0.50 N 27 1 N1 G DA 305 ? ? C6 G DA 305 ? ? N6 G DA 305 ? ? 122.32 118.60 3.72 0.60 N 28 1 "O4'" G DC 306 ? ? "C1'" G DC 306 ? ? N1 G DC 306 ? ? 101.21 108.00 -6.79 0.70 N 29 1 "O4'" G DG 307 ? ? "C1'" G DG 307 ? ? N9 G DG 307 ? ? 111.78 108.30 3.48 0.30 N 30 1 N3 G DT 308 ? ? C4 G DT 308 ? ? O4 G DT 308 ? ? 123.78 119.90 3.88 0.60 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 I N2C 3 ? CD ? F N2C 3 CD 2 1 Y 1 I NCY 7 ? CD ? F NCY 7 CD 3 1 Y 1 J N2C 3 ? CD ? G N2C 3 CD 4 1 Y 1 J NCY 7 ? CD ? G NCY 7 CD 5 1 Y 1 K N2C 3 ? CD ? H N2C 3 CD # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2ADW 'double helix' 2ADW 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 6 1_555 A DG 3 1_555 0.155 -0.237 0.224 -18.532 0.972 -4.850 1 C_DC106:DG3_A C 106 ? A 3 ? 19 1 1 B DG 7 1_555 A DC 2 1_555 -0.413 -0.040 0.483 24.164 -1.860 -3.597 2 C_DG107:DC2_A C 107 ? A 2 ? 19 1 1 B DT 8 1_555 A DA 1 1_555 -0.482 3.432 0.263 -1.346 11.223 -74.604 3 C_DT108:DA1_A C 108 ? A 1 ? 23 3 1 D DT 8 1_555 C DA 1 1_555 -0.346 3.578 0.201 6.550 8.217 -63.016 4 G_DT308:DA201_E G 308 ? E 201 ? 23 3 1 A DT 4 1_555 B DA 5 1_555 -0.322 -0.174 0.274 -14.346 1.868 5.820 5 A_DT4:DA105_C A 4 ? C 105 ? 20 1 1 A DA 5 1_555 B DT 4 1_555 0.017 -0.126 0.266 4.684 3.002 -1.997 6 A_DA5:DT104_C A 5 ? C 104 ? 20 1 1 A DC 6 1_555 B DG 3 1_555 0.215 -0.190 0.132 -20.431 6.045 -2.451 7 A_DC6:DG103_C A 6 ? C 103 ? 19 1 1 A DG 7 1_555 B DC 2 1_555 -0.407 -0.073 0.144 20.694 1.315 -2.009 8 A_DG7:DC102_C A 7 ? C 102 ? 19 1 1 A DT 8 1_555 B DA 1 1_555 -0.200 -0.056 0.446 -14.919 6.356 -1.780 9 A_DT8:DA101_C A 8 ? C 101 ? 20 1 1 C DC 2 1_555 D DG 7 1_555 0.038 -0.212 0.371 -24.283 3.038 -4.862 10 E_DC202:DG307_G E 202 ? G 307 ? 19 1 1 C DG 3 1_555 D DC 6 1_555 -0.088 -0.200 0.333 25.302 4.966 -5.910 11 E_DG203:DC306_G E 203 ? G 306 ? 19 1 1 C DT 4 1_555 D DA 5 1_555 -0.409 3.564 0.573 -4.778 8.746 -65.685 12 E_DT204:DA305_G E 204 ? G 305 ? 23 3 1 C DA 5 1_555 D DT 4 1_555 0.573 -3.716 -0.593 6.637 -11.089 67.422 13 E_DA205:DT304_G E 205 ? G 304 ? 23 3 1 C DC 6 1_555 D DG 3 1_555 0.338 -0.185 0.291 -19.538 2.326 -2.144 14 E_DC206:DG303_G E 206 ? G 303 ? 19 1 1 C DG 7 1_555 D DC 2 1_555 -0.284 -0.053 0.288 24.449 3.051 -2.064 15 E_DG207:DC302_G E 207 ? G 302 ? 19 1 1 C DT 8 1_555 D DA 1 1_555 -0.714 3.653 0.472 -5.306 8.923 -70.598 16 E_DT208:DA301_G E 208 ? G 301 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 6 1_555 A DG 3 1_555 B DG 7 1_555 A DC 2 1_555 0.208 2.086 2.555 -0.903 -0.181 5.890 20.792 -5.645 2.430 -1.748 8.717 5.961 1 CC_DC106DG107:DC2DG3_AA C 106 ? A 3 ? C 107 ? A 2 ? 1 B DG 7 1_555 A DC 2 1_555 B DT 8 1_555 A DA 1 1_555 0.666 0.217 7.466 -10.203 4.496 67.985 -0.186 -1.447 7.316 3.994 9.062 68.785 2 CC_DG107DT108:DA1DC2_AA C 107 ? A 2 ? C 108 ? A 1 ? 1 B DT 8 1_555 A DA 1 1_555 D DT 8 1_555 C DA 1 1_555 -0.934 3.264 -1.289 122.173 123.821 70.523 1.758 0.345 0.616 62.820 -61.984 175.059 3 CG_DT108DT308:DA201DA1_EA C 108 ? A 1 ? G 308 ? E 201 ? 1 A DT 4 1_555 B DA 5 1_555 A DA 5 1_555 B DT 4 1_555 -0.416 0.304 2.940 -2.584 -0.173 28.975 0.639 0.316 2.964 -0.345 5.150 29.088 4 AA_DT4DA5:DT104DA105_CC A 4 ? C 105 ? A 5 ? C 104 ? 1 A DA 5 1_555 B DT 4 1_555 A DC 6 1_555 B DG 3 1_555 1.109 1.011 7.123 9.212 4.686 27.136 -0.319 2.382 7.179 9.558 -18.790 29.003 5 AA_DA5DC6:DG103DT104_CC A 5 ? C 104 ? A 6 ? C 103 ? 1 A DC 6 1_555 B DG 3 1_555 A DG 7 1_555 B DC 2 1_555 -0.172 2.562 2.486 -0.177 0.249 10.444 13.742 0.712 2.549 1.369 0.975 10.448 6 AA_DC6DG7:DC102DG103_CC A 6 ? C 103 ? A 7 ? C 102 ? 1 A DG 7 1_555 B DC 2 1_555 A DT 8 1_555 B DA 1 1_555 -0.741 0.779 7.248 -11.227 3.199 15.146 -1.445 -11.081 6.319 10.359 36.355 19.102 7 AA_DG7DT8:DA101DC102_CC A 7 ? C 102 ? A 8 ? C 101 ? 1 C DC 2 1_555 D DG 7 1_555 C DG 3 1_555 D DC 6 1_555 0.103 1.870 2.369 1.147 -0.472 4.930 23.483 4.670 2.147 -5.379 -13.059 5.084 8 EE_DC202DG203:DC306DG307_GG E 202 ? G 307 ? E 203 ? G 306 ? 1 C DT 4 1_555 D DA 5 1_555 C DA 5 1_555 D DT 4 1_555 3.167 -4.946 0.364 -160.024 77.094 172.470 -2.476 -1.589 0.035 38.548 80.014 179.844 9 EE_DT204DA205:DT304DA305_GG E 204 ? G 305 ? E 205 ? G 304 ? 1 C DA 5 1_555 D DT 4 1_555 C DC 6 1_555 D DG 3 1_555 3.690 6.302 -0.837 -142.460 90.143 -51.633 -2.923 2.232 -0.592 -46.791 -73.947 -169.727 10 EE_DA205DC206:DG303DT304_GG E 205 ? G 304 ? E 206 ? G 303 ? 1 C DC 6 1_555 D DG 3 1_555 C DG 7 1_555 D DC 2 1_555 -0.118 2.272 2.445 -0.774 -1.355 7.889 18.909 -0.709 2.028 -9.724 5.557 8.041 11 EE_DC206DG207:DC302DG303_GG E 206 ? G 303 ? E 207 ? G 302 ? 1 C DG 7 1_555 D DC 2 1_555 C DT 8 1_555 D DA 1 1_555 0.544 -0.697 7.172 -7.158 3.011 50.820 -1.254 -1.695 6.992 3.485 8.286 51.371 12 EE_DG207DT208:DA301DC302_GG E 207 ? G 302 ? E 208 ? G 301 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 4 'NICKEL (II) ION' NI 5 'ZINC ION' ZN 6 2-CARBOXYQUINOXALINE QUI 7 water HOH #