data_2AIZ # _entry.id 2AIZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.366 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2AIZ pdb_00002aiz 10.2210/pdb2aiz/pdb RCSB RCSB033948 ? ? WWPDB D_1000033948 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id HI0381 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2AIZ _pdbx_database_status.recvd_initial_deposition_date 2005-08-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Parsons, L.M.' 1 ? 'Lin, F.' 2 ? 'Orban, J.' 3 ? 'Structure 2 Function Project (S2F)' 4 ? # _citation.id primary _citation.title 'Peptidoglycan recognition by pal, an outer membrane lipoprotein.' _citation.journal_abbrev Biochemistry _citation.journal_volume 45 _citation.page_first 2122 _citation.page_last 2128 _citation.year 2006 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16475801 _citation.pdbx_database_id_DOI 10.1021/bi052227i # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parsons, L.M.' 1 ? primary 'Lin, F.' 2 ? primary 'Orban, J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Outer membrane protein P6 (Fragment)' 14250.564 1 ? ? ? ? 2 polymer syn L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine 533.552 1 ? ? ? ? 3 non-polymer man 'N-acetyl-beta-muramic acid' 293.270 1 ? ? ? ? 4 non-polymer syn "URIDINE-5'-DIPHOSPHATE" 404.161 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;CSSSNNDAAGNGAAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNI ALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY ; ;CSSSNNDAAGNGAAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNI ALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY ; P HI0381 2 'polypeptide(L)' no yes 'A(DGL)(6CL)(DAL)(DAL)' AEKAA U ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 SER n 1 3 SER n 1 4 SER n 1 5 ASN n 1 6 ASN n 1 7 ASP n 1 8 ALA n 1 9 ALA n 1 10 GLY n 1 11 ASN n 1 12 GLY n 1 13 ALA n 1 14 ALA n 1 15 GLN n 1 16 THR n 1 17 PHE n 1 18 GLY n 1 19 GLY n 1 20 TYR n 1 21 SER n 1 22 VAL n 1 23 ALA n 1 24 ASP n 1 25 LEU n 1 26 GLN n 1 27 GLN n 1 28 ARG n 1 29 TYR n 1 30 ASN n 1 31 THR n 1 32 VAL n 1 33 TYR n 1 34 PHE n 1 35 GLY n 1 36 PHE n 1 37 ASP n 1 38 LYS n 1 39 TYR n 1 40 ASP n 1 41 ILE n 1 42 THR n 1 43 GLY n 1 44 GLU n 1 45 TYR n 1 46 VAL n 1 47 GLN n 1 48 ILE n 1 49 LEU n 1 50 ASP n 1 51 ALA n 1 52 HIS n 1 53 ALA n 1 54 ALA n 1 55 TYR n 1 56 LEU n 1 57 ASN n 1 58 ALA n 1 59 THR n 1 60 PRO n 1 61 ALA n 1 62 ALA n 1 63 LYS n 1 64 VAL n 1 65 LEU n 1 66 VAL n 1 67 GLU n 1 68 GLY n 1 69 ASN n 1 70 THR n 1 71 ASP n 1 72 GLU n 1 73 ARG n 1 74 GLY n 1 75 THR n 1 76 PRO n 1 77 GLU n 1 78 TYR n 1 79 ASN n 1 80 ILE n 1 81 ALA n 1 82 LEU n 1 83 GLY n 1 84 GLN n 1 85 ARG n 1 86 ARG n 1 87 ALA n 1 88 ASP n 1 89 ALA n 1 90 VAL n 1 91 LYS n 1 92 GLY n 1 93 TYR n 1 94 LEU n 1 95 ALA n 1 96 GLY n 1 97 LYS n 1 98 GLY n 1 99 VAL n 1 100 ASP n 1 101 ALA n 1 102 GLY n 1 103 LYS n 1 104 LEU n 1 105 GLY n 1 106 THR n 1 107 VAL n 1 108 SER n 1 109 TYR n 1 110 GLY n 1 111 GLU n 1 112 GLU n 1 113 LYS n 1 114 PRO n 1 115 ALA n 1 116 VAL n 1 117 LEU n 1 118 GLY n 1 119 HIS n 1 120 ASP n 1 121 GLU n 1 122 ALA n 1 123 ALA n 1 124 TYR n 1 125 SER n 1 126 LYS n 1 127 ASN n 1 128 ARG n 1 129 ARG n 1 130 ALA n 1 131 VAL n 1 132 LEU n 1 133 ALA n 1 134 TYR n 2 1 ALA n 2 2 DGL n 2 3 6CL n 2 4 DAL n 2 5 DAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 134 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Haemophilus _entity_src_gen.pdbx_gene_src_gene ompP6 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Haemophilus influenzae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 727 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pet28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 5 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP M4PH67_HAEIF M4PH67 ? 1 ;CSSSNNDAAGNGAAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNI ALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY ; 1 2 PDB 2AIZ 2AIZ ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2AIZ P 1 ? 134 ? M4PH67 1 ? 134 ? 1 134 2 2 2AIZ U 1 ? 5 ? 2AIZ 3 ? 7 ? 3 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6CL 'L-peptide linking' n 6-CARBOXYLYSINE ? 'C7 H15 N2 O4 1' 191.205 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMU 'D-saccharide, beta linking' . 'N-acetyl-beta-muramic acid' 'N-acetyl-muramic acid; BETA-N-ACETYLMURAMIC ACID' 'C11 H19 N O8' 293.270 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UDP 'RNA linking' . "URIDINE-5'-DIPHOSPHATE" ? 'C9 H14 N2 O12 P2' 404.161 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 3 1 3D_13C-separated_NOESY 2 4 1 '2D NOESY' 2 5 1 3D_13C-separated_NOESY 3 6 1 '2D TOCSY' 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 ambient 6.7 '50mM phosphate, 50mM NaCl' . K 2 298 ambient 6.7 '50mM phosphate, 50mM NaCl' . K 3 298 ambient 6.7 '50mM phosphate, 50mM NaCl' . K 4 298 ambient 6.7 '50mM phosphate, 50mM NaCl' . K 5 298 ambient 6.7 '50mM phosphate, 50mM NaCl' . K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.8mM PAL + UYP; 15N/13C. 50mM phosphate 50mM NaCL, pH6.7, 90% H2O, 10% D2O' '90% H2O/10% D2O' 2 '0.8mM PAL + UYP; 15N/13C. 50mM phosphate 50mM NaCL, pH6.7, 100% D2O' D2O 3 '0.8mM PAL(unlabeled) + UYP(15N/13C). 50mM phosphate 50mM NaCL, pH6.7, 100% D2O' D2O 4 '0.8mM PAL + UYP; 15N/13C. 50mM phosphate 50mM NaCL, pH6.7, phage, 90% H2O 10% D2O' '90% H2O/10% D2O' 5 '1mM UYP 15N/13C, 100% D2O' D2O # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_ensemble.entry_id 2AIZ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2AIZ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS 1.1 ;A.T.Brunger,P.D.Adams,G.M.Clore,W.L.Delano,P.Gros,R.W.Grosse-Kunstleve,J.-S.Jiang,J.Kuszewski,M.Nilges,N.S.Pannu,R.J.Read,L.M.Rice,T.Simonson,G.L.Warren ; 1 'data analysis' Sparky 2.4 T.D.Goddard,D.G.Kneller 2 processing NMRPipe 1.0 F.Delaglio,S.Grzesiek,G.W.Vuister,G.Zhu,J.Pfeifer,A.Bax 3 # _exptl.entry_id 2AIZ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.details ? _exptl.method_details ? # _struct.entry_id 2AIZ _struct.title ;Solution structure of peptidoglycan associated lipoprotein from Haemophilus influenza bound to UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AIZ _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'alpha-beta sandwich, Structure 2 Function Project, S2F, Structural Genomics, MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 21 ? GLN A 26 ? SER P 21 GLN P 26 1 ? 6 HELX_P HELX_P2 2 THR A 42 ? THR A 59 ? THR P 42 THR P 59 1 ? 18 HELX_P HELX_P3 3 THR A 75 ? LYS A 97 ? THR P 75 LYS P 97 1 ? 23 HELX_P HELX_P4 4 ASP A 100 ? GLY A 102 ? ASP P 100 GLY P 102 5 ? 3 HELX_P HELX_P5 5 ASP A 120 ? ARG A 128 ? ASP P 120 ARG P 128 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ALA 1 C ? ? ? 1_555 B DGL 2 N ? ? U ALA 3 U DGL 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale one ? B ALA 1 N ? ? ? 1_555 C AMU . C10 ? ? U ALA 3 U AMU 101 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? B DGL 2 C ? ? ? 1_555 B 6CL 3 N ? ? U DGL 4 U 6CL 5 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? B 6CL 3 C ? ? ? 1_555 B DAL 4 N ? ? U 6CL 5 U DAL 6 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? B DAL 4 C ? ? ? 1_555 B DAL 5 N ? ? U DAL 6 U DAL 7 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale6 covale both ? C AMU . O1 ? ? ? 1_555 D UDP . PB ? ? U AMU 101 U UDP 102 1_555 ? ? ? ? ? ? ? 1.601 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 31 ? TYR A 33 ? THR P 31 TYR P 33 A 2 ARG A 129 ? ALA A 133 ? ARG P 129 ALA P 133 A 3 VAL A 64 ? ASN A 69 ? VAL P 64 ASN P 69 A 4 LEU A 104 ? SER A 108 ? LEU P 104 SER P 108 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 32 ? N VAL P 32 O ALA A 130 ? O ALA P 130 A 2 3 O ALA A 133 ? O ALA P 133 N LEU A 65 ? N LEU P 65 A 3 4 N VAL A 66 ? N VAL P 66 O GLY A 105 ? O GLY P 105 # _database_PDB_matrix.entry_id 2AIZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2AIZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS P . n A 1 2 SER 2 2 2 SER SER P . n A 1 3 SER 3 3 3 SER SER P . n A 1 4 SER 4 4 4 SER SER P . n A 1 5 ASN 5 5 5 ASN ASN P . n A 1 6 ASN 6 6 6 ASN ASN P . n A 1 7 ASP 7 7 7 ASP ASP P . n A 1 8 ALA 8 8 8 ALA ALA P . n A 1 9 ALA 9 9 9 ALA ALA P . n A 1 10 GLY 10 10 10 GLY GLY P . n A 1 11 ASN 11 11 11 ASN ASN P . n A 1 12 GLY 12 12 12 GLY GLY P . n A 1 13 ALA 13 13 13 ALA ALA P . n A 1 14 ALA 14 14 14 ALA ALA P . n A 1 15 GLN 15 15 15 GLN GLN P . n A 1 16 THR 16 16 16 THR THR P . n A 1 17 PHE 17 17 17 PHE PHE P . n A 1 18 GLY 18 18 18 GLY GLY P . n A 1 19 GLY 19 19 19 GLY GLY P . n A 1 20 TYR 20 20 20 TYR TYR P . n A 1 21 SER 21 21 21 SER SER P . n A 1 22 VAL 22 22 22 VAL VAL P . n A 1 23 ALA 23 23 23 ALA ALA P . n A 1 24 ASP 24 24 24 ASP ASP P . n A 1 25 LEU 25 25 25 LEU LEU P . n A 1 26 GLN 26 26 26 GLN GLN P . n A 1 27 GLN 27 27 27 GLN GLN P . n A 1 28 ARG 28 28 28 ARG ARG P . n A 1 29 TYR 29 29 29 TYR TYR P . n A 1 30 ASN 30 30 30 ASN ASN P . n A 1 31 THR 31 31 31 THR THR P . n A 1 32 VAL 32 32 32 VAL VAL P . n A 1 33 TYR 33 33 33 TYR TYR P . n A 1 34 PHE 34 34 34 PHE PHE P . n A 1 35 GLY 35 35 35 GLY GLY P . n A 1 36 PHE 36 36 36 PHE PHE P . n A 1 37 ASP 37 37 37 ASP ASP P . n A 1 38 LYS 38 38 38 LYS LYS P . n A 1 39 TYR 39 39 39 TYR TYR P . n A 1 40 ASP 40 40 40 ASP ASP P . n A 1 41 ILE 41 41 41 ILE ILE P . n A 1 42 THR 42 42 42 THR THR P . n A 1 43 GLY 43 43 43 GLY GLY P . n A 1 44 GLU 44 44 44 GLU GLU P . n A 1 45 TYR 45 45 45 TYR TYR P . n A 1 46 VAL 46 46 46 VAL VAL P . n A 1 47 GLN 47 47 47 GLN GLN P . n A 1 48 ILE 48 48 48 ILE ILE P . n A 1 49 LEU 49 49 49 LEU LEU P . n A 1 50 ASP 50 50 50 ASP ASP P . n A 1 51 ALA 51 51 51 ALA ALA P . n A 1 52 HIS 52 52 52 HIS HIS P . n A 1 53 ALA 53 53 53 ALA ALA P . n A 1 54 ALA 54 54 54 ALA ALA P . n A 1 55 TYR 55 55 55 TYR TYR P . n A 1 56 LEU 56 56 56 LEU LEU P . n A 1 57 ASN 57 57 57 ASN ASN P . n A 1 58 ALA 58 58 58 ALA ALA P . n A 1 59 THR 59 59 59 THR THR P . n A 1 60 PRO 60 60 60 PRO PRO P . n A 1 61 ALA 61 61 61 ALA ALA P . n A 1 62 ALA 62 62 62 ALA ALA P . n A 1 63 LYS 63 63 63 LYS LYS P . n A 1 64 VAL 64 64 64 VAL VAL P . n A 1 65 LEU 65 65 65 LEU LEU P . n A 1 66 VAL 66 66 66 VAL VAL P . n A 1 67 GLU 67 67 67 GLU GLU P . n A 1 68 GLY 68 68 68 GLY GLY P . n A 1 69 ASN 69 69 69 ASN ASN P . n A 1 70 THR 70 70 70 THR THR P . n A 1 71 ASP 71 71 71 ASP ASP P . n A 1 72 GLU 72 72 72 GLU GLU P . n A 1 73 ARG 73 73 73 ARG ARG P . n A 1 74 GLY 74 74 74 GLY GLY P . n A 1 75 THR 75 75 75 THR THR P . n A 1 76 PRO 76 76 76 PRO PRO P . n A 1 77 GLU 77 77 77 GLU GLU P . n A 1 78 TYR 78 78 78 TYR TYR P . n A 1 79 ASN 79 79 79 ASN ASN P . n A 1 80 ILE 80 80 80 ILE ILE P . n A 1 81 ALA 81 81 81 ALA ALA P . n A 1 82 LEU 82 82 82 LEU LEU P . n A 1 83 GLY 83 83 83 GLY GLY P . n A 1 84 GLN 84 84 84 GLN GLN P . n A 1 85 ARG 85 85 85 ARG ARG P . n A 1 86 ARG 86 86 86 ARG ARG P . n A 1 87 ALA 87 87 87 ALA ALA P . n A 1 88 ASP 88 88 88 ASP ASP P . n A 1 89 ALA 89 89 89 ALA ALA P . n A 1 90 VAL 90 90 90 VAL VAL P . n A 1 91 LYS 91 91 91 LYS LYS P . n A 1 92 GLY 92 92 92 GLY GLY P . n A 1 93 TYR 93 93 93 TYR TYR P . n A 1 94 LEU 94 94 94 LEU LEU P . n A 1 95 ALA 95 95 95 ALA ALA P . n A 1 96 GLY 96 96 96 GLY GLY P . n A 1 97 LYS 97 97 97 LYS LYS P . n A 1 98 GLY 98 98 98 GLY GLY P . n A 1 99 VAL 99 99 99 VAL VAL P . n A 1 100 ASP 100 100 100 ASP ASP P . n A 1 101 ALA 101 101 101 ALA ALA P . n A 1 102 GLY 102 102 102 GLY GLY P . n A 1 103 LYS 103 103 103 LYS LYS P . n A 1 104 LEU 104 104 104 LEU LEU P . n A 1 105 GLY 105 105 105 GLY GLY P . n A 1 106 THR 106 106 106 THR THR P . n A 1 107 VAL 107 107 107 VAL VAL P . n A 1 108 SER 108 108 108 SER SER P . n A 1 109 TYR 109 109 109 TYR TYR P . n A 1 110 GLY 110 110 110 GLY GLY P . n A 1 111 GLU 111 111 111 GLU GLU P . n A 1 112 GLU 112 112 112 GLU GLU P . n A 1 113 LYS 113 113 113 LYS LYS P . n A 1 114 PRO 114 114 114 PRO PRO P . n A 1 115 ALA 115 115 115 ALA ALA P . n A 1 116 VAL 116 116 116 VAL VAL P . n A 1 117 LEU 117 117 117 LEU LEU P . n A 1 118 GLY 118 118 118 GLY GLY P . n A 1 119 HIS 119 119 119 HIS HIS P . n A 1 120 ASP 120 120 120 ASP ASP P . n A 1 121 GLU 121 121 121 GLU GLU P . n A 1 122 ALA 122 122 122 ALA ALA P . n A 1 123 ALA 123 123 123 ALA ALA P . n A 1 124 TYR 124 124 124 TYR TYR P . n A 1 125 SER 125 125 125 SER SER P . n A 1 126 LYS 126 126 126 LYS LYS P . n A 1 127 ASN 127 127 127 ASN ASN P . n A 1 128 ARG 128 128 128 ARG ARG P . n A 1 129 ARG 129 129 129 ARG ARG P . n A 1 130 ALA 130 130 130 ALA ALA P . n A 1 131 VAL 131 131 131 VAL VAL P . n A 1 132 LEU 132 132 132 LEU LEU P . n A 1 133 ALA 133 133 133 ALA ALA P . n A 1 134 TYR 134 134 134 TYR TYR P . n B 2 1 ALA 1 3 3 ALA ALA U . n B 2 2 DGL 2 4 4 DGL DGL U . n B 2 3 6CL 3 5 5 6CL 6CL U . n B 2 4 DAL 4 6 6 DAL DAL U . n B 2 5 DAL 5 7 7 DAL DAL U . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structure 2 Function Project' _pdbx_SG_project.initial_of_center S2F # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AMU 1 101 2 AMU AMU U . D 4 UDP 1 102 1 UDP UDP U . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B DGL 2 U DGL 4 ? GLU 'D-GLUTAMIC ACID' 2 B 6CL 3 U 6CL 5 ? LYS 6-CARBOXYLYSINE 3 B DAL 4 U DAL 6 ? ALA D-ALANINE 4 B DAL 5 U DAL 7 ? ALA D-ALANINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 2 0 2023-02-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Polymer sequence' 11 5 'Structure model' 'Source and taxonomy' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' pdbx_chem_comp_identifier 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 5 'Structure model' atom_site 8 5 'Structure model' chem_comp 9 5 'Structure model' database_2 10 5 'Structure model' diffrn 11 5 'Structure model' diffrn_radiation 12 5 'Structure model' diffrn_radiation_wavelength 13 5 'Structure model' entity 14 5 'Structure model' entity_name_com 15 5 'Structure model' entity_poly 16 5 'Structure model' entity_poly_seq 17 5 'Structure model' entity_src_gen 18 5 'Structure model' pdbx_entity_nonpoly 19 5 'Structure model' pdbx_entity_src_syn 20 5 'Structure model' pdbx_nonpoly_scheme 21 5 'Structure model' pdbx_poly_seq_scheme 22 5 'Structure model' pdbx_struct_assembly_gen 23 5 'Structure model' pdbx_struct_mod_residue 24 5 'Structure model' pdbx_struct_oper_list 25 5 'Structure model' struct_asym 26 5 'Structure model' struct_conn 27 5 'Structure model' struct_ref 28 5 'Structure model' struct_ref_seq # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_atom_site.Cartn_x' 6 5 'Structure model' '_atom_site.Cartn_y' 7 5 'Structure model' '_atom_site.Cartn_z' 8 5 'Structure model' '_atom_site.auth_atom_id' 9 5 'Structure model' '_atom_site.auth_comp_id' 10 5 'Structure model' '_atom_site.auth_seq_id' 11 5 'Structure model' '_atom_site.group_PDB' 12 5 'Structure model' '_atom_site.label_asym_id' 13 5 'Structure model' '_atom_site.label_atom_id' 14 5 'Structure model' '_atom_site.label_comp_id' 15 5 'Structure model' '_atom_site.label_entity_id' 16 5 'Structure model' '_atom_site.label_seq_id' 17 5 'Structure model' '_atom_site.type_symbol' 18 5 'Structure model' '_chem_comp.pdbx_synonyms' 19 5 'Structure model' '_database_2.pdbx_DOI' 20 5 'Structure model' '_database_2.pdbx_database_accession' 21 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 22 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 23 5 'Structure model' '_entity_src_gen.pdbx_beg_seq_num' 24 5 'Structure model' '_entity_src_gen.pdbx_end_seq_num' 25 5 'Structure model' '_entity_src_gen.pdbx_gene_src_gene' 26 5 'Structure model' '_entity_src_gen.pdbx_seq_type' 27 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 28 5 'Structure model' '_pdbx_struct_mod_residue.label_seq_id' 29 5 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 30 5 'Structure model' '_struct_conn.pdbx_dist_value' 31 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 43 5 'Structure model' '_struct_ref.db_code' 44 5 'Structure model' '_struct_ref.pdbx_align_begin' 45 5 'Structure model' '_struct_ref.pdbx_db_accession' 46 5 'Structure model' '_struct_ref_seq.db_align_beg' 47 5 'Structure model' '_struct_ref_seq.db_align_end' 48 5 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg' 49 5 'Structure model' '_struct_ref_seq.pdbx_db_accession' 50 5 'Structure model' '_struct_ref_seq.seq_align_end' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER P 2 ? ? 58.70 163.26 2 1 ALA P 8 ? ? -143.24 17.95 3 1 ALA P 9 ? ? 81.94 -17.75 4 1 ALA P 14 ? ? -30.53 142.61 5 1 ASN P 30 ? ? -160.77 18.02 6 1 ASN P 79 ? ? -67.66 -75.45 7 1 ILE P 80 ? ? -29.70 -43.46 8 1 GLU P 112 ? ? -47.65 -70.24 9 1 ALA P 115 ? ? -97.68 -74.75 10 1 GLU P 121 ? ? -38.44 -30.94 11 1 ARG P 128 ? ? -69.64 83.22 12 1 LEU P 132 ? ? -59.19 102.13 13 2 SER P 3 ? ? -61.14 -173.54 14 2 ALA P 8 ? ? -174.57 -88.24 15 2 ALA P 9 ? ? 69.81 -55.96 16 2 ASN P 11 ? ? 66.20 135.19 17 2 ALA P 13 ? ? -46.21 -72.48 18 2 ALA P 14 ? ? 61.74 69.38 19 2 GLN P 15 ? ? -118.66 -109.57 20 2 ASN P 30 ? ? 179.66 22.65 21 2 ASP P 37 ? ? 49.67 26.00 22 2 ARG P 73 ? ? -39.59 108.95 23 2 ASN P 79 ? ? -70.51 -76.85 24 2 VAL P 107 ? ? -171.13 129.22 25 2 ALA P 115 ? ? -107.38 -62.70 26 2 GLU P 121 ? ? -37.93 -32.36 27 2 ARG P 128 ? ? -69.79 74.61 28 2 DGL U 4 ? ? -62.67 -133.84 29 3 SER P 3 ? ? 67.92 61.44 30 3 ALA P 8 ? ? 77.55 -166.77 31 3 ALA P 9 ? ? 65.51 126.75 32 3 TYR P 20 ? ? 60.57 -178.34 33 3 GLN P 27 ? ? -140.60 -3.49 34 3 ARG P 28 ? ? -107.54 -68.03 35 3 ASN P 30 ? ? -162.77 27.66 36 3 ASP P 37 ? ? 45.45 29.04 37 3 TYR P 39 ? ? -119.57 67.08 38 3 ASN P 79 ? ? -67.83 -76.70 39 3 ILE P 80 ? ? -33.10 -38.75 40 3 ARG P 128 ? ? -68.97 79.64 41 4 ASP P 7 ? ? -90.03 -62.65 42 4 ALA P 8 ? ? -172.95 -176.46 43 4 ALA P 9 ? ? 63.39 138.68 44 4 ASN P 11 ? ? 178.68 124.25 45 4 GLN P 15 ? ? -109.16 -164.51 46 4 ARG P 28 ? ? -122.83 -50.17 47 4 ASN P 30 ? ? -176.08 11.05 48 4 ASP P 37 ? ? 43.59 29.76 49 4 THR P 70 ? ? -170.26 -173.33 50 4 ASN P 79 ? ? -67.50 -75.44 51 4 ILE P 80 ? ? -29.48 -44.79 52 4 ARG P 128 ? ? -67.25 87.42 53 5 SER P 2 ? ? -172.33 -172.33 54 5 SER P 3 ? ? 61.04 89.82 55 5 ALA P 8 ? ? 63.27 137.31 56 5 ALA P 13 ? ? -90.02 -73.22 57 5 ARG P 28 ? ? 164.47 -68.87 58 5 ASN P 30 ? ? -168.29 64.69 59 5 THR P 70 ? ? 176.20 174.79 60 5 ARG P 73 ? ? -39.33 110.74 61 5 ASN P 79 ? ? -70.68 -75.19 62 5 VAL P 107 ? ? -175.28 117.19 63 5 ALA P 115 ? ? -105.30 -67.40 64 5 DGL U 4 ? ? -39.30 -131.90 65 6 SER P 2 ? ? -174.69 133.70 66 6 SER P 3 ? ? -98.62 35.02 67 6 ALA P 8 ? ? 65.52 -76.37 68 6 ARG P 28 ? ? -107.57 -67.96 69 6 ASP P 37 ? ? 46.91 28.05 70 6 THR P 70 ? ? -170.16 -173.64 71 6 ARG P 73 ? ? -39.75 109.41 72 6 ASN P 79 ? ? -69.51 -76.05 73 6 VAL P 107 ? ? -174.26 117.56 74 6 ALA P 115 ? ? -97.51 -66.01 75 6 HIS P 119 ? ? -140.23 43.53 76 6 LEU P 132 ? ? -58.82 100.28 77 6 6CL U 5 ? ? -67.43 18.02 78 6 DAL U 6 ? ? 52.68 -179.25 79 7 SER P 3 ? ? -177.48 -64.51 80 7 ALA P 8 ? ? 84.81 -178.66 81 7 ASN P 11 ? ? 64.14 129.52 82 7 ALA P 13 ? ? -90.45 -73.26 83 7 ALA P 14 ? ? 174.05 53.17 84 7 GLN P 15 ? ? 61.35 110.22 85 7 ASN P 30 ? ? -164.68 13.02 86 7 THR P 70 ? ? -165.23 -169.98 87 7 ASN P 79 ? ? -71.11 -76.59 88 7 VAL P 107 ? ? -164.57 114.73 89 7 ALA P 115 ? ? -104.26 -63.08 90 7 ARG P 128 ? ? -67.44 88.67 91 8 ALA P 8 ? ? 62.92 -80.66 92 8 ASN P 11 ? ? -178.95 -178.86 93 8 ARG P 28 ? ? -109.94 -66.91 94 8 ASN P 30 ? ? -152.47 16.35 95 8 ARG P 73 ? ? -39.37 106.20 96 8 ASN P 79 ? ? -61.84 -75.12 97 8 VAL P 107 ? ? -177.00 111.24 98 8 ARG P 128 ? ? -66.35 90.20 99 8 DGL U 4 ? ? -167.62 -18.54 100 9 ALA P 8 ? ? 67.63 -81.33 101 9 ASN P 30 ? ? -140.39 13.71 102 9 ARG P 73 ? ? -39.68 106.92 103 9 ASN P 79 ? ? -65.38 -74.54 104 9 ILE P 80 ? ? -32.27 -38.43 105 9 VAL P 107 ? ? 179.05 114.69 106 9 ALA P 115 ? ? -109.37 -61.92 107 9 ARG P 128 ? ? -65.49 88.33 108 10 SER P 3 ? ? 70.35 -63.47 109 10 ASP P 7 ? ? -90.91 -70.41 110 10 ASN P 11 ? ? -178.08 49.24 111 10 ALA P 14 ? ? -62.44 82.04 112 10 GLN P 27 ? ? -143.42 -3.57 113 10 ARG P 28 ? ? -107.26 -69.87 114 10 ASN P 30 ? ? -150.14 18.75 115 10 ASP P 37 ? ? 46.00 28.21 116 10 ASN P 79 ? ? -67.99 -74.33 117 10 ILE P 80 ? ? -29.98 -44.63 118 10 VAL P 107 ? ? -175.39 119.00 119 10 ALA P 115 ? ? -106.73 -64.91 120 10 GLU P 121 ? ? -37.78 -33.29 121 10 DGL U 4 ? ? 61.27 130.23 122 11 SER P 2 ? ? 63.07 -79.54 123 11 ASN P 11 ? ? 64.85 -107.36 124 11 ALA P 14 ? ? 76.48 124.14 125 11 ARG P 28 ? ? -141.57 59.92 126 11 TYR P 29 ? ? 157.50 95.86 127 11 ASN P 30 ? ? 172.95 15.97 128 11 ARG P 73 ? ? -41.80 165.07 129 11 ASN P 79 ? ? -76.94 -76.88 130 11 LEU P 132 ? ? -59.68 102.19 131 11 DGL U 4 ? ? -56.87 -140.26 132 12 ALA P 8 ? ? -167.03 116.03 133 12 ASN P 11 ? ? 68.34 -68.75 134 12 ALA P 14 ? ? -100.24 -168.65 135 12 ARG P 28 ? ? -109.78 -62.16 136 12 ASN P 30 ? ? -141.53 13.45 137 12 THR P 70 ? ? -170.25 -175.19 138 12 ARG P 73 ? ? -40.74 107.43 139 12 ASN P 79 ? ? -68.78 -76.75 140 12 ALA P 115 ? ? -106.72 -61.64 141 12 ARG P 128 ? ? -65.82 87.25 142 13 SER P 3 ? ? -141.60 -77.10 143 13 ALA P 9 ? ? -94.08 -154.10 144 13 ASN P 11 ? ? -177.59 111.51 145 13 ASN P 30 ? ? -170.44 20.07 146 13 ASP P 37 ? ? 42.01 28.61 147 13 ARG P 73 ? ? -44.97 106.89 148 13 ALA P 115 ? ? -107.92 -70.07 149 13 GLU P 121 ? ? -38.00 -32.18 150 13 ARG P 128 ? ? -69.74 80.21 151 13 LEU P 132 ? ? -59.41 98.95 152 14 SER P 2 ? ? 61.43 114.20 153 14 ALA P 8 ? ? 67.78 -170.96 154 14 ALA P 13 ? ? -59.20 -73.61 155 14 GLN P 27 ? ? -141.39 -9.89 156 14 ASN P 30 ? ? -178.38 27.11 157 14 ARG P 73 ? ? -39.82 104.75 158 14 ASN P 79 ? ? -63.56 -74.94 159 14 VAL P 107 ? ? -176.02 114.48 160 14 ALA P 115 ? ? -99.84 -61.69 161 14 GLU P 121 ? ? -38.98 -32.67 162 14 ARG P 128 ? ? -66.18 82.41 163 15 SER P 3 ? ? -174.47 -41.32 164 15 ALA P 8 ? ? 59.12 103.01 165 15 ALA P 9 ? ? -175.32 60.27 166 15 ASN P 11 ? ? 62.89 127.25 167 15 ALA P 14 ? ? -103.12 -160.25 168 15 GLN P 15 ? ? 67.14 154.46 169 15 ASN P 30 ? ? 179.44 22.34 170 15 THR P 70 ? ? -164.73 -165.29 171 15 ASN P 79 ? ? -70.94 -76.02 172 15 ALA P 115 ? ? -104.37 -65.44 173 15 DGL U 4 ? ? -58.62 -147.92 174 16 SER P 3 ? ? 60.16 109.11 175 16 ALA P 9 ? ? -168.49 -157.88 176 16 GLN P 15 ? ? 62.72 134.36 177 16 ASP P 37 ? ? 44.68 29.61 178 16 ARG P 73 ? ? -46.21 106.62 179 16 ALA P 115 ? ? -106.39 -63.61 180 16 DGL U 4 ? ? -62.31 -147.06 181 17 SER P 2 ? ? -99.04 -64.35 182 17 SER P 3 ? ? 61.30 -177.26 183 17 ALA P 8 ? ? 179.83 143.61 184 17 ALA P 9 ? ? 61.19 153.59 185 17 ASN P 11 ? ? 62.95 -177.71 186 17 ALA P 14 ? ? -64.11 -139.76 187 17 ASN P 30 ? ? -155.07 13.77 188 17 THR P 70 ? ? -165.29 -165.55 189 17 ARG P 73 ? ? -39.91 110.03 190 17 ASN P 79 ? ? -69.92 -75.49 191 17 ILE P 80 ? ? -29.63 -45.68 192 17 VAL P 107 ? ? -172.85 121.15 193 17 ALA P 115 ? ? -105.48 -67.21 194 17 HIS P 119 ? ? -140.39 58.77 195 17 LEU P 132 ? ? -61.31 98.47 196 18 SER P 3 ? ? 59.14 -174.65 197 18 ALA P 8 ? ? 57.69 163.17 198 18 ALA P 9 ? ? 75.33 -53.96 199 18 ASN P 11 ? ? 66.81 -65.86 200 18 ALA P 13 ? ? -90.11 -73.23 201 18 ARG P 28 ? ? -107.11 -66.74 202 18 ASP P 37 ? ? 44.59 29.43 203 18 VAL P 107 ? ? -176.15 119.71 204 18 ALA P 115 ? ? -100.45 -68.63 205 18 ARG P 128 ? ? -69.35 81.05 206 18 LEU P 132 ? ? -61.05 99.07 207 19 SER P 2 ? ? -172.45 139.87 208 19 SER P 3 ? ? -61.29 -156.38 209 19 ALA P 8 ? ? 46.49 -169.73 210 19 GLN P 15 ? ? -176.72 114.83 211 19 GLN P 27 ? ? -142.71 -6.59 212 19 ARG P 28 ? ? -107.42 -69.12 213 19 ASN P 30 ? ? -150.20 19.26 214 19 ARG P 73 ? ? -39.55 110.91 215 19 ASN P 79 ? ? -64.62 -76.27 216 19 ILE P 80 ? ? -35.42 -38.50 217 19 TYR P 109 ? ? -91.31 -68.46 218 19 GLU P 112 ? ? -46.47 -74.09 219 19 ALA P 115 ? ? -88.55 -77.66 220 19 DGL U 4 ? ? -57.41 83.43 221 20 ALA P 8 ? ? -166.25 -76.10 222 20 ASN P 11 ? ? -163.32 30.27 223 20 ALA P 14 ? ? 65.73 -165.89 224 20 TYR P 39 ? ? -117.65 77.50 225 20 ASN P 69 ? ? -160.91 106.19 226 20 ARG P 73 ? ? -38.13 108.27 227 20 ASN P 79 ? ? -67.15 -75.12 228 20 ILE P 80 ? ? -29.40 -41.17 229 20 SER P 108 ? ? -160.28 113.58 230 20 ALA P 115 ? ? -101.97 -71.47 231 20 HIS P 119 ? ? -140.16 52.94 232 20 ARG P 128 ? ? -68.85 85.07 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AMU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc3 AMU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 MurNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'N-acetyl-beta-muramic acid' AMU 4 "URIDINE-5'-DIPHOSPHATE" UDP #