HEADER TRANSFERASE 09-AUG-05 2AML TITLE CRYSTAL STRUCTURE OF LMO0035 PROTEIN (46906266) FROM LISTERIA TITLE 2 MONOCYTOGENES 4B F2365 AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIS DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 265669; SOURCE 4 STRAIN: 4B F2365; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: HK100 KEYWDS 46906266, LMO0035 PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 25-JAN-23 2AML 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2AML 1 VERSN REVDAT 2 24-FEB-09 2AML 1 VERSN REVDAT 1 18-OCT-05 2AML 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF LMO0035 PROTEIN (46906266) FROM JRNL TITL 2 LISTERIA MONOCYTOGENES 4B F2365 AT 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0013 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 105143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5535 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7621 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 448 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 1059 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.173 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5928 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3925 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8051 ; 1.628 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9637 ; 1.015 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 727 ; 5.960 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 262 ;29.852 ;24.389 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1019 ;11.525 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;20.373 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 933 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6510 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1187 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1190 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4296 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2973 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2817 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 769 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.240 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.271 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 99 ; 0.198 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3964 ; 1.076 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1464 ; 0.295 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5935 ; 1.418 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2490 ; 2.345 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2116 ; 3.334 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 361 6 REMARK 3 1 B 1 B 361 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 4631 ; 0.31 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 4631 ; 1.22 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 361 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8030 43.6920 7.0150 REMARK 3 T TENSOR REMARK 3 T11: -0.1629 T22: -0.1417 REMARK 3 T33: -0.1395 T12: 0.0011 REMARK 3 T13: 0.0017 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.3478 L22: 0.3686 REMARK 3 L33: 0.5509 L12: -0.0171 REMARK 3 L13: 0.0274 L23: 0.0414 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: 0.0521 S13: -0.0493 REMARK 3 S21: -0.0081 S22: -0.0146 S23: 0.0351 REMARK 3 S31: 0.0332 S32: -0.0303 S33: 0.0253 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 361 REMARK 3 ORIGIN FOR THE GROUP (A): 49.1120 65.1650 24.4130 REMARK 3 T TENSOR REMARK 3 T11: -0.1324 T22: -0.1581 REMARK 3 T33: -0.1562 T12: -0.0043 REMARK 3 T13: -0.0088 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.3310 L22: 0.4990 REMARK 3 L33: 0.6957 L12: -0.0488 REMARK 3 L13: 0.0222 L23: 0.0888 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.0171 S13: 0.0217 REMARK 3 S21: 0.0053 S22: -0.0127 S23: 0.0129 REMARK 3 S31: -0.1314 S32: -0.0062 S33: 0.0285 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932, 0.90497 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110766 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : 0.40600 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.0% GLYCEROL, 0.17M NH4OAC, 25.5% REMARK 280 PEG-4000, 0.1M CITRATE PH 5.6 , VAPOR DIFFUSION,SITTING DROP, REMARK 280 NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.15750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.07550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.69850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.07550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.15750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.69850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 39 CE NZ REMARK 470 LYS A 109 CE NZ REMARK 470 LYS A 110 CE NZ REMARK 470 ARG A 186 CZ NH1 NH2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 LYS A 338 CE NZ REMARK 470 LYS A 352 CE NZ REMARK 470 LYS B 35 CD CE NZ REMARK 470 ASN B 36 CG OD1 ND2 REMARK 470 LYS B 39 CD CE NZ REMARK 470 LYS B 141 CE NZ REMARK 470 LYS B 168 CE NZ REMARK 470 LYS B 298 CD CE NZ REMARK 470 GLU B 300 CG CD OE1 OE2 REMARK 470 LYS B 338 CE NZ REMARK 470 LYS B 352 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 148 -71.67 -128.99 REMARK 500 PHE A 290 66.96 -100.18 REMARK 500 ALA B 38 97.50 -160.06 REMARK 500 THR B 148 -72.38 -124.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 363 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 358817 RELATED DB: TARGETDB DBREF 2AML A 1 361 UNP Q4EK90 Q4EK90_LISMO 1 361 DBREF 2AML B 1 361 UNP Q4EK90 Q4EK90_LISMO 1 361 SEQADV 2AML MSE A -11 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML GLY A -10 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML SER A -9 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML ASP A -8 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML LYS A -7 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML ILE A -6 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS A -5 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS A -4 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS A -3 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS A -2 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS A -1 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS A 0 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML MSE A 1 UNP Q4EK90 MET 1 MODIFIED RESIDUE SEQADV 2AML MSE A 5 UNP Q4EK90 MET 5 MODIFIED RESIDUE SEQADV 2AML MSE A 6 UNP Q4EK90 MET 6 MODIFIED RESIDUE SEQADV 2AML MSE A 15 UNP Q4EK90 MET 15 MODIFIED RESIDUE SEQADV 2AML MSE A 159 UNP Q4EK90 MET 159 MODIFIED RESIDUE SEQADV 2AML MSE A 251 UNP Q4EK90 MET 251 MODIFIED RESIDUE SEQADV 2AML MSE A 320 UNP Q4EK90 MET 320 MODIFIED RESIDUE SEQADV 2AML MSE A 351 UNP Q4EK90 MET 351 MODIFIED RESIDUE SEQADV 2AML MSE B -11 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML GLY B -10 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML SER B -9 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML ASP B -8 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML LYS B -7 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML ILE B -6 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS B -5 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS B -4 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS B -3 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS B -2 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS B -1 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML HIS B 0 UNP Q4EK90 EXPRESSION TAG SEQADV 2AML MSE B 1 UNP Q4EK90 MET 1 MODIFIED RESIDUE SEQADV 2AML MSE B 5 UNP Q4EK90 MET 5 MODIFIED RESIDUE SEQADV 2AML MSE B 6 UNP Q4EK90 MET 6 MODIFIED RESIDUE SEQADV 2AML MSE B 15 UNP Q4EK90 MET 15 MODIFIED RESIDUE SEQADV 2AML MSE B 159 UNP Q4EK90 MET 159 MODIFIED RESIDUE SEQADV 2AML MSE B 251 UNP Q4EK90 MET 251 MODIFIED RESIDUE SEQADV 2AML MSE B 320 UNP Q4EK90 MET 320 MODIFIED RESIDUE SEQADV 2AML MSE B 351 UNP Q4EK90 MET 351 MODIFIED RESIDUE SEQRES 1 A 373 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 373 LYS PRO THR MSE MSE THR TYR ILE ASN GLU GLU GLU GLU SEQRES 3 A 373 MSE CYS ARG VAL ILE LEU ALA ASP PHE GLN THR ASN ALA SEQRES 4 A 373 GLU LYS LEU GLU SER LEU VAL LYS ASN GLY ALA LYS GLU SEQRES 5 A 373 TRP LEU ILE LEU ALA THR GLY SER SER LEU ASN ALA ALA SEQRES 6 A 373 GLN SER ALA LYS TYR TYR ILE GLU ASN LEU ALA ASP VAL SEQRES 7 A 373 ARG ILE THR ILE GLU GLU PRO PHE ASN HIS LEU TYR TYR SEQRES 8 A 373 GLU LYS LEU SER SER HIS LEU ASP LEU VAL ILE GLY ILE SEQRES 9 A 373 SER GLN SER GLY GLN SER THR SER THR ILE SER ALA LEU SEQRES 10 A 373 GLU ARG VAL LYS LYS GLU ALA SER VAL PRO VAL VAL ALA SEQRES 11 A 373 LEU THR SER ASP VAL THR SER GLU ILE ALA GLU PHE ALA SEQRES 12 A 373 ASP ILE THR LEU ASP ILE GLY SER GLY LYS GLU ARG VAL SEQRES 13 A 373 GLY TYR VAL THR LYS GLY PHE THR ALA THR VAL LEU THR SEQRES 14 A 373 LEU MSE LEU THR GLY LEU HIS PHE ALA TYR LYS THR VAL SEQRES 15 A 373 GLN ILE ASP GLU THR ARG PHE ASN ASN GLU ILE SER ALA SEQRES 16 A 373 PHE SER ARG ALA ILE ASP ALA ILE PRO ALA THR ILE ALA SEQRES 17 A 373 GLU THR GLU ALA PHE TYR GLU ARG TRP GLN GLU GLU PHE SEQRES 18 A 373 ALA THR ALA PRO LYS PHE THR ALA ILE GLY TYR GLY PRO SEQRES 19 A 373 THR VAL GLY THR CYS LYS GLU PHE GLU THR LYS PHE SER SEQRES 20 A 373 GLU THR VAL ARG VAL PRO SER GLN GLY LEU ASP LEU GLU SEQRES 21 A 373 ALA PHE MSE HIS GLY PRO TYR LEU GLU VAL ASN PRO GLN SEQRES 22 A 373 HIS ARG ILE PHE PHE LEU GLU THR ALA SER ALA VAL THR SEQRES 23 A 373 GLU ARG LEU VAL LEU LEU ARG ASP TYR GLU SER LYS TYR SEQRES 24 A 373 THR PRO PHE THR TYR THR VAL LYS PHE GLY LYS GLY GLU SEQRES 25 A 373 ASP ASP ARG THR LEU VAL ILE PRO THR ASP LEU ASP GLU SEQRES 26 A 373 TYR GLN ALA PRO PHE LEU MSE ILE LEU PRO PHE GLN ILE SEQRES 27 A 373 LEU ALA HIS HIS ILE ALA GLU LEU LYS GLY ASN LYS LEU SEQRES 28 A 373 THR GLU ARG ILE TYR THR ASP PHE GLY VAL ALA MSE LYS SEQRES 29 A 373 SER LYS THR LYS PRO GLY ASP TYR ALA SEQRES 1 B 373 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 373 LYS PRO THR MSE MSE THR TYR ILE ASN GLU GLU GLU GLU SEQRES 3 B 373 MSE CYS ARG VAL ILE LEU ALA ASP PHE GLN THR ASN ALA SEQRES 4 B 373 GLU LYS LEU GLU SER LEU VAL LYS ASN GLY ALA LYS GLU SEQRES 5 B 373 TRP LEU ILE LEU ALA THR GLY SER SER LEU ASN ALA ALA SEQRES 6 B 373 GLN SER ALA LYS TYR TYR ILE GLU ASN LEU ALA ASP VAL SEQRES 7 B 373 ARG ILE THR ILE GLU GLU PRO PHE ASN HIS LEU TYR TYR SEQRES 8 B 373 GLU LYS LEU SER SER HIS LEU ASP LEU VAL ILE GLY ILE SEQRES 9 B 373 SER GLN SER GLY GLN SER THR SER THR ILE SER ALA LEU SEQRES 10 B 373 GLU ARG VAL LYS LYS GLU ALA SER VAL PRO VAL VAL ALA SEQRES 11 B 373 LEU THR SER ASP VAL THR SER GLU ILE ALA GLU PHE ALA SEQRES 12 B 373 ASP ILE THR LEU ASP ILE GLY SER GLY LYS GLU ARG VAL SEQRES 13 B 373 GLY TYR VAL THR LYS GLY PHE THR ALA THR VAL LEU THR SEQRES 14 B 373 LEU MSE LEU THR GLY LEU HIS PHE ALA TYR LYS THR VAL SEQRES 15 B 373 GLN ILE ASP GLU THR ARG PHE ASN ASN GLU ILE SER ALA SEQRES 16 B 373 PHE SER ARG ALA ILE ASP ALA ILE PRO ALA THR ILE ALA SEQRES 17 B 373 GLU THR GLU ALA PHE TYR GLU ARG TRP GLN GLU GLU PHE SEQRES 18 B 373 ALA THR ALA PRO LYS PHE THR ALA ILE GLY TYR GLY PRO SEQRES 19 B 373 THR VAL GLY THR CYS LYS GLU PHE GLU THR LYS PHE SER SEQRES 20 B 373 GLU THR VAL ARG VAL PRO SER GLN GLY LEU ASP LEU GLU SEQRES 21 B 373 ALA PHE MSE HIS GLY PRO TYR LEU GLU VAL ASN PRO GLN SEQRES 22 B 373 HIS ARG ILE PHE PHE LEU GLU THR ALA SER ALA VAL THR SEQRES 23 B 373 GLU ARG LEU VAL LEU LEU ARG ASP TYR GLU SER LYS TYR SEQRES 24 B 373 THR PRO PHE THR TYR THR VAL LYS PHE GLY LYS GLY GLU SEQRES 25 B 373 ASP ASP ARG THR LEU VAL ILE PRO THR ASP LEU ASP GLU SEQRES 26 B 373 TYR GLN ALA PRO PHE LEU MSE ILE LEU PRO PHE GLN ILE SEQRES 27 B 373 LEU ALA HIS HIS ILE ALA GLU LEU LYS GLY ASN LYS LEU SEQRES 28 B 373 THR GLU ARG ILE TYR THR ASP PHE GLY VAL ALA MSE LYS SEQRES 29 B 373 SER LYS THR LYS PRO GLY ASP TYR ALA MODRES 2AML MSE A 1 MET SELENOMETHIONINE MODRES 2AML MSE A 5 MET SELENOMETHIONINE MODRES 2AML MSE A 6 MET SELENOMETHIONINE MODRES 2AML MSE A 15 MET SELENOMETHIONINE MODRES 2AML MSE A 159 MET SELENOMETHIONINE MODRES 2AML MSE A 251 MET SELENOMETHIONINE MODRES 2AML MSE A 320 MET SELENOMETHIONINE MODRES 2AML MSE A 351 MET SELENOMETHIONINE MODRES 2AML MSE B 1 MET SELENOMETHIONINE MODRES 2AML MSE B 5 MET SELENOMETHIONINE MODRES 2AML MSE B 6 MET SELENOMETHIONINE MODRES 2AML MSE B 15 MET SELENOMETHIONINE MODRES 2AML MSE B 159 MET SELENOMETHIONINE MODRES 2AML MSE B 251 MET SELENOMETHIONINE MODRES 2AML MSE B 320 MET SELENOMETHIONINE MODRES 2AML MSE B 351 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 5 8 HET MSE A 6 8 HET MSE A 15 8 HET MSE A 159 8 HET MSE A 251 8 HET MSE A 320 12 HET MSE A 351 8 HET MSE B 1 8 HET MSE B 5 8 HET MSE B 6 8 HET MSE B 15 8 HET MSE B 159 8 HET MSE B 251 8 HET MSE B 320 12 HET MSE B 351 8 HET PO4 A 362 5 HET GOL A 363 6 HET ACT B 362 4 HET PO4 B 363 5 HET GOL B 364 6 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 ACT C2 H3 O2 1- FORMUL 8 HOH *1059(H2 O) HELIX 1 1 HIS A -2 LYS A 2 5 5 HELIX 2 2 THR A 4 ASN A 10 1 7 HELIX 3 3 GLU A 11 SER A 32 1 22 HELIX 4 4 THR A 46 ALA A 64 1 19 HELIX 5 5 GLU A 72 GLU A 80 1 9 HELIX 6 6 SER A 98 ALA A 112 1 15 HELIX 7 7 SER A 125 ALA A 131 5 7 HELIX 8 8 THR A 148 THR A 169 1 22 HELIX 9 9 ASP A 173 ALA A 190 1 18 HELIX 10 10 ALA A 190 ALA A 210 1 21 HELIX 11 11 PRO A 222 VAL A 238 1 17 HELIX 12 12 LEU A 247 MSE A 251 1 5 HELIX 13 13 HIS A 252 VAL A 258 5 7 HELIX 14 14 VAL A 273 SER A 285 1 13 HELIX 15 15 ALA A 316 ILE A 321 1 6 HELIX 16 16 ILE A 321 LYS A 335 1 15 HELIX 17 17 ASP A 346 MSE A 351 1 6 HELIX 18 18 THR B 4 ASN B 10 1 7 HELIX 19 19 GLU B 11 PHE B 23 1 13 HELIX 20 20 PHE B 23 VAL B 34 1 12 HELIX 21 21 THR B 46 ALA B 64 1 19 HELIX 22 22 GLU B 72 GLU B 80 1 9 HELIX 23 23 SER B 98 ALA B 112 1 15 HELIX 24 24 SER B 125 ALA B 131 5 7 HELIX 25 25 THR B 148 THR B 169 1 22 HELIX 26 26 ASP B 173 ALA B 190 1 18 HELIX 27 27 ALA B 190 ALA B 210 1 21 HELIX 28 28 PRO B 222 VAL B 238 1 17 HELIX 29 29 GLU B 248 VAL B 258 5 11 HELIX 30 30 VAL B 273 SER B 285 1 13 HELIX 31 31 ALA B 316 ILE B 321 1 6 HELIX 32 32 ILE B 321 LYS B 335 1 15 HELIX 33 33 ASP B 346 MSE B 351 1 6 SHEET 1 A 5 ARG A 67 GLU A 71 0 SHEET 2 A 5 GLU A 40 ALA A 45 1 N ILE A 43 O THR A 69 SHEET 3 A 5 LEU A 88 ILE A 92 1 O ILE A 90 N LEU A 42 SHEET 4 A 5 VAL A 116 THR A 120 1 O VAL A 117 N GLY A 91 SHEET 5 A 5 ILE A 133 ASP A 136 1 O LEU A 135 N ALA A 118 SHEET 1 B 5 SER A 242 ASP A 246 0 SHEET 2 B 5 PHE A 215 GLY A 219 1 N ALA A 217 O LEU A 245 SHEET 3 B 5 ARG A 263 GLU A 268 1 O PHE A 265 N THR A 216 SHEET 4 B 5 THR A 291 PHE A 296 1 O VAL A 294 N GLU A 268 SHEET 5 B 5 THR A 304 ILE A 307 1 O ILE A 307 N LYS A 295 SHEET 1 C 5 ARG B 67 GLU B 71 0 SHEET 2 C 5 GLU B 40 ALA B 45 1 N TRP B 41 O ARG B 67 SHEET 3 C 5 LEU B 88 ILE B 92 1 O ILE B 90 N LEU B 42 SHEET 4 C 5 VAL B 116 THR B 120 1 O VAL B 117 N GLY B 91 SHEET 5 C 5 ILE B 133 ASP B 136 1 O LEU B 135 N ALA B 118 SHEET 1 D 5 SER B 242 ASP B 246 0 SHEET 2 D 5 PHE B 215 GLY B 219 1 N ALA B 217 O LEU B 245 SHEET 3 D 5 ARG B 263 GLU B 268 1 O PHE B 265 N THR B 216 SHEET 4 D 5 THR B 291 PHE B 296 1 O VAL B 294 N GLU B 268 SHEET 5 D 5 THR B 304 ILE B 307 1 O LEU B 305 N THR B 293 LINK C HIS A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LYS A 2 1555 1555 1.31 LINK C THR A 4 N MSE A 5 1555 1555 1.33 LINK C MSE A 5 N MSE A 6 1555 1555 1.33 LINK C MSE A 6 N THR A 7 1555 1555 1.33 LINK C GLU A 14 N MSE A 15 1555 1555 1.33 LINK C MSE A 15 N CYS A 16 1555 1555 1.33 LINK C LEU A 158 N MSE A 159 1555 1555 1.33 LINK C MSE A 159 N LEU A 160 1555 1555 1.33 LINK C PHE A 250 N MSE A 251 1555 1555 1.32 LINK C MSE A 251 N HIS A 252 1555 1555 1.34 LINK C LEU A 319 N MSE A 320 1555 1555 1.34 LINK C MSE A 320 N ILE A 321 1555 1555 1.34 LINK C ALA A 350 N MSE A 351 1555 1555 1.32 LINK C MSE A 351 N LYS A 352 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C THR B 4 N MSE B 5 1555 1555 1.32 LINK C MSE B 5 N MSE B 6 1555 1555 1.34 LINK C MSE B 6 N THR B 7 1555 1555 1.32 LINK C GLU B 14 N MSE B 15 1555 1555 1.34 LINK C MSE B 15 N CYS B 16 1555 1555 1.32 LINK C LEU B 158 N MSE B 159 1555 1555 1.32 LINK C MSE B 159 N LEU B 160 1555 1555 1.34 LINK C PHE B 250 N MSE B 251 1555 1555 1.32 LINK C MSE B 251 N HIS B 252 1555 1555 1.34 LINK C LEU B 319 N MSE B 320 1555 1555 1.34 LINK C MSE B 320 N ILE B 321 1555 1555 1.32 LINK C ALA B 350 N MSE B 351 1555 1555 1.34 LINK C MSE B 351 N LYS B 352 1555 1555 1.32 SITE 1 AC1 6 HOH A 480 ARG B 342 TYR B 360 HOH B 418 SITE 2 AC1 6 HOH B 446 HOH B 574 SITE 1 AC2 11 HOH A 557 SER B 49 SER B 93 GLN B 94 SITE 2 AC2 11 SER B 95 SER B 98 LYS B 354 HOH B 374 SITE 3 AC2 11 HOH B 542 HOH B 567 HOH B 577 SITE 1 AC3 11 SER A 49 SER A 93 GLN A 94 SER A 95 SITE 2 AC3 11 SER A 98 LYS A 354 HOH A 365 HOH A 443 SITE 3 AC3 11 HOH A 528 HOH A 585 HOH A 659 SITE 1 AC4 7 TYR A 78 TYR A 79 SER B 271 ALA B 272 SITE 2 AC4 7 GLU B 313 TYR B 314 HOH B 685 SITE 1 AC5 10 HIS A -2 HIS A -1 HIS A -3 SER A 182 SITE 2 AC5 10 SER A 185 HOH A 403 HOH A 549 PRO B 308 SITE 3 AC5 10 HOH B 667 HOH B 719 CRYST1 56.315 101.397 120.151 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008320 0.00000