HEADER TRANSFERASE 12-AUG-05 2AOA TITLE CRYSTAL STRUCTURES OF A HIGH-AFFINITY MACROCYCLIC PEPTIDE MIMETIC IN TITLE 2 COMPLEX WITH THE GRB2 SH2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SH2 (RESIDUES 55 - 153); COMPND 5 SYNONYM: GRB2 ADAPTER PROTEIN, SH2/SH3 ADAPTER GRB2, ASH PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRB2, ASH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GRB2 SH2, DOMAIN-SWAPPED, PEPTIDE MIMETIC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,Z.D.SHI,T.R.BURKE,D.S.WAUGH REVDAT 5 14-FEB-24 2AOA 1 REMARK HETSYN REVDAT 4 11-OCT-17 2AOA 1 REMARK REVDAT 3 13-JUL-11 2AOA 1 VERSN REVDAT 2 24-FEB-09 2AOA 1 VERSN REVDAT 1 04-OCT-05 2AOA 0 JRNL AUTH J.PHAN,Z.D.SHI,T.R.BURKE,D.S.WAUGH JRNL TITL CRYSTAL STRUCTURES OF A HIGH-AFFINITY MACROCYCLIC PEPTIDE JRNL TITL 2 MIMETIC IN COMPLEX WITH THE GRB2 SH2 DOMAIN. JRNL REF J.MOL.BIOL. V. 353 104 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16165154 JRNL DOI 10.1016/J.JMB.2005.08.037 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 13733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 799 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 693 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1302 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 187 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1534 ; 0.044 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1343 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2072 ; 3.755 ; 2.055 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3107 ; 1.836 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 167 ;10.265 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 211 ; 0.658 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1705 ; 0.019 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 375 ; 0.013 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 310 ; 0.268 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1581 ; 0.287 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 950 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.347 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.073 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.249 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.465 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 855 ; 2.071 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1340 ; 3.397 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 679 ; 4.676 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 732 ; 6.720 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AOA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13733 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 56.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, SODIUM CHLORIDE, SODIUM REMARK 280 ACETATE, PH 5.7, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.32950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.62000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.32950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.62000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.32950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.62000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.32950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.62000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.08650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.62000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.08650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 53.62000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 44.08650 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.62000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 44.08650 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.62000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 44.08650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.32950 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 44.08650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.32950 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 44.08650 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.32950 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 44.08650 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.32950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 55 REMARK 465 LYS A 56 REMARK 465 PRO A 57 REMARK 465 ILE A 151 REMARK 465 GLU A 152 REMARK 465 GLN A 153 REMARK 465 MET B 55 REMARK 465 LYS B 56 REMARK 465 PRO B 57 REMARK 465 HIS B 58 REMARK 465 PRO B 59 REMARK 465 TRP B 60 REMARK 465 PHE B 61 REMARK 465 PHE B 62 REMARK 465 GLY B 63 REMARK 465 LYS B 64 REMARK 465 ILE B 65 REMARK 465 PRO B 66 REMARK 465 ARG B 67 REMARK 465 SER B 88 REMARK 465 GLU B 89 REMARK 465 SER B 90 REMARK 465 ALA B 91 REMARK 465 PRO B 92 REMARK 465 ASP B 150 REMARK 465 ILE B 151 REMARK 465 GLU B 152 REMARK 465 GLN B 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 58 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 MET A 73 CB CG SD CE REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 79 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 103 CG OD1 ND2 REMARK 470 ASN A 129 CG OD1 ND2 REMARK 470 PHE A 147 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 148 CG CD1 CD2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 150 CG OD1 OD2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 GLU B 72 CG CD OE1 OE2 REMARK 470 MET B 73 CB CG SD CE REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 ARG B 78 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 ASP B 104 CG OD1 OD2 REMARK 470 ARG B 112 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 144 CG CD OE1 NE2 REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 77 O HOH B 529 1.81 REMARK 500 O HOH A 426 O HOH A 432 1.82 REMARK 500 O LEU A 148 O HOH A 446 1.87 REMARK 500 O HOH A 418 O HOH A 420 2.02 REMARK 500 OG1 THR A 138 O HOH A 431 2.04 REMARK 500 NZ LYS A 117 CB LYS B 124 2.04 REMARK 500 O LYS B 76 O HOH B 525 2.07 REMARK 500 O HOH A 467 O HOH A 468 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 60 CE3 TRP A 60 CZ3 0.108 REMARK 500 PHE A 61 CE1 PHE A 61 CZ -0.128 REMARK 500 ALA A 70 CA ALA A 70 CB 0.131 REMARK 500 PHE A 108 CD1 PHE A 108 CE1 -0.136 REMARK 500 ARG A 112 NE ARG A 112 CZ -0.108 REMARK 500 VAL A 123 CB VAL A 123 CG1 -0.190 REMARK 500 ASN A 129 CA ASN A 129 CB 0.209 REMARK 500 GLU A 130 CD GLU A 130 OE1 0.076 REMARK 500 TYR A 134 CB TYR A 134 CG -0.123 REMARK 500 TYR A 134 CE1 TYR A 134 CZ -0.102 REMARK 500 SER A 139 CA SER A 139 CB -0.096 REMARK 500 ILE A 146 CA ILE A 146 CB 0.159 REMARK 500 PHE A 147 CA PHE A 147 CB 0.163 REMARK 500 ARG A 149 CA ARG A 149 CB -0.195 REMARK 500 ASP A 150 CA ASP A 150 CB 0.153 REMARK 500 VAL B 110 CB VAL B 110 CG1 -0.135 REMARK 500 VAL B 110 CB VAL B 110 CG2 0.127 REMARK 500 GLU B 130 CD GLU B 130 OE1 0.093 REMARK 500 SER B 139 N SER B 139 CA -0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASP A 80 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 80 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 LYS A 100 CD - CE - NZ ANGL. DEV. = 16.1 DEGREES REMARK 500 ASP A 104 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 112 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASP A 113 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 PHE A 147 N - CA - C ANGL. DEV. = 24.7 DEGREES REMARK 500 PHE A 147 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 149 N - CA - C ANGL. DEV. = 24.6 DEGREES REMARK 500 LYS B 69 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 ASP B 80 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 113 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ILE B 146 CG1 - CB - CG2 ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 59 -31.07 -37.83 REMARK 500 LYS A 76 34.09 -88.36 REMARK 500 ARG A 78 -79.68 -58.08 REMARK 500 PHE A 147 -67.97 -102.56 REMARK 500 LEU A 148 169.40 173.75 REMARK 500 SER B 75 -44.51 -29.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 148 ARG A 149 -124.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S1S A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S1S B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S1S A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P33 B 501 DBREF 2AOA A 55 153 UNP P62993 GRB2_HUMAN 55 153 DBREF 2AOA B 55 153 UNP P62993 GRB2_HUMAN 55 153 SEQRES 1 A 99 MET LYS PRO HIS PRO TRP PHE PHE GLY LYS ILE PRO ARG SEQRES 2 A 99 ALA LYS ALA GLU GLU MET LEU SER LYS GLN ARG HIS ASP SEQRES 3 A 99 GLY ALA PHE LEU ILE ARG GLU SER GLU SER ALA PRO GLY SEQRES 4 A 99 ASP PHE SER LEU SER VAL LYS PHE GLY ASN ASP VAL GLN SEQRES 5 A 99 HIS PHE LYS VAL LEU ARG ASP GLY ALA GLY LYS TYR PHE SEQRES 6 A 99 LEU TRP VAL VAL LYS PHE ASN SER LEU ASN GLU LEU VAL SEQRES 7 A 99 ASP TYR HIS ARG SER THR SER VAL SER ARG ASN GLN GLN SEQRES 8 A 99 ILE PHE LEU ARG ASP ILE GLU GLN SEQRES 1 B 99 MET LYS PRO HIS PRO TRP PHE PHE GLY LYS ILE PRO ARG SEQRES 2 B 99 ALA LYS ALA GLU GLU MET LEU SER LYS GLN ARG HIS ASP SEQRES 3 B 99 GLY ALA PHE LEU ILE ARG GLU SER GLU SER ALA PRO GLY SEQRES 4 B 99 ASP PHE SER LEU SER VAL LYS PHE GLY ASN ASP VAL GLN SEQRES 5 B 99 HIS PHE LYS VAL LEU ARG ASP GLY ALA GLY LYS TYR PHE SEQRES 6 B 99 LEU TRP VAL VAL LYS PHE ASN SER LEU ASN GLU LEU VAL SEQRES 7 B 99 ASP TYR HIS ARG SER THR SER VAL SER ARG ASN GLN GLN SEQRES 8 B 99 ILE PHE LEU ARG ASP ILE GLU GLN HET S1S A 201 55 HET S1S A 401 55 HET S1S B 301 55 HET P33 B 501 22 HETNAM S1S 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2-OXOETHYL)-9- HETNAM 2 S1S (CARBOXYMETHYL)-14-(NAPHTHALEN-1-YLMETHYL)-8,17,20- HETNAM 3 S1S TRIOXO-7,16,19-TRIAZASPIRO[5.14]ICOS-11-EN-10-YL) HETNAM 4 S1S PHENYL)MALONIC ACID HETNAM P33 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL HETSYN P33 HEPTAETHYLENE GLYCOL; PEG330 FORMUL 3 S1S 3(C41 H46 N4 O10) FORMUL 6 P33 C14 H30 O8 FORMUL 7 HOH *103(H2 O) HELIX 1 1 PRO A 66 LYS A 76 1 11 HELIX 2 2 SER A 127 HIS A 135 1 9 HELIX 3 3 LYS B 69 LEU B 74 1 6 HELIX 4 4 SER B 127 HIS B 135 1 9 SHEET 1 A 3 PHE A 83 GLU A 87 0 SHEET 2 A 3 PHE A 95 PHE A 101 -1 O SER A 96 N ARG A 86 SHEET 3 A 3 ASP A 104 LYS A 109 -1 O GLN A 106 N VAL A 99 SHEET 1 B 2 LEU A 111 ARG A 112 0 SHEET 2 B 2 TYR A 118 PHE A 119 -1 O PHE A 119 N LEU A 111 SHEET 1 C 3 PHE B 83 ARG B 86 0 SHEET 2 C 3 SER B 96 LYS B 100 -1 O SER B 98 N LEU B 84 SHEET 3 C 3 VAL B 105 LYS B 109 -1 O PHE B 108 N LEU B 97 SHEET 1 D 2 LEU B 111 ARG B 112 0 SHEET 2 D 2 TYR B 118 PHE B 119 -1 O PHE B 119 N LEU B 111 SITE 1 AC1 12 ARG A 67 ARG A 86 SER A 88 GLU A 89 SITE 2 AC1 12 SER A 90 SER A 96 HIS A 107 PHE A 108 SITE 3 AC1 12 LYS A 109 LEU A 111 LEU A 120 ARG B 142 SITE 1 AC2 15 ASN A 143 S1S A 401 HOH A 402 HOH A 406 SITE 2 AC2 15 HOH A 417 ARG B 86 SER B 96 HIS B 107 SITE 3 AC2 15 PHE B 108 LYS B 109 LEU B 111 LEU B 120 SITE 4 AC2 15 TRP B 121 P33 B 501 HOH B 524 SITE 1 AC3 15 ASP A 113 LYS A 117 ARG A 142 HOH A 402 SITE 2 AC3 15 HOH A 404 HOH A 458 ASP B 94 LYS B 109 SITE 3 AC3 15 LEU B 111 TRP B 121 VAL B 122 LYS B 124 SITE 4 AC3 15 GLU B 130 S1S B 301 HOH B 506 SITE 1 AC4 3 ARG B 112 S1S B 301 HOH B 517 CRYST1 88.173 102.659 107.240 90.00 90.00 90.00 F 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011341 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009325 0.00000