HEADER TRANSFERASE 15-AUG-05 2AP1 TITLE CRYSTAL STRUCTURE OF THE PUTATIVE REGULATORY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REGULATOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 GENE: YCFX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ZINC BINDING PROTEIN, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, PUTATIVE KEYWDS 3 KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.BRUNZELLE,G.MINASOV,L.SHUVALOVA,F.R.COLLART,A.JOACHIMIAK, AUTHOR 2 W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 14-FEB-24 2AP1 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 2AP1 1 REMARK REVDAT 4 13-JUL-11 2AP1 1 VERSN REVDAT 3 14-JUL-10 2AP1 1 AUTHOR REVDAT 2 24-FEB-09 2AP1 1 VERSN REVDAT 1 27-SEP-05 2AP1 0 JRNL AUTH J.S.BRUNZELLE,G.MINASOV,L.SHUVALOVA,F.R.COLLART,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF THE PUTATIVE REGULATORY PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1548 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2094 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : -1.50000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.572 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2450 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3338 ; 1.643 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 3.641 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;31.166 ;23.248 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 389 ;11.145 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1922 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1160 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1687 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 267 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.042 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.018 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1528 ; 1.251 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2449 ; 2.120 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 953 ; 3.222 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 883 ; 4.837 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.284 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCOLLECT REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.23200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, TRI-SODIUM CITRATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.13100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.13100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.79050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.87200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.79050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.87200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.13100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.79050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.87200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.13100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.79050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.87200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 105.74400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 572 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 205 40.74 -86.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 157 ND1 REMARK 620 2 CYS A 177 SG 101.9 REMARK 620 3 CYS A 179 SG 111.7 106.6 REMARK 620 4 CYS A 184 SG 121.9 110.8 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 334 O REMARK 620 2 HOH A 358 O 95.1 REMARK 620 3 HOH A 364 O 81.7 160.7 REMARK 620 4 HOH A 390 O 86.2 87.9 72.9 REMARK 620 5 HOH A 506 O 97.7 104.5 94.9 166.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC23343 RELATED DB: TARGETDB DBREF 2AP1 A 1 303 UNP Q8ZPZ9 Q8ZPZ9_SALTY 1 303 SEQADV 2AP1 MET A -23 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 HIS A -22 UNP Q8ZPZ9 EXPRESSION TAG SEQADV 2AP1 HIS A -21 UNP Q8ZPZ9 EXPRESSION TAG SEQADV 2AP1 HIS A -20 UNP Q8ZPZ9 EXPRESSION TAG SEQADV 2AP1 HIS A -19 UNP Q8ZPZ9 EXPRESSION TAG SEQADV 2AP1 HIS A -18 UNP Q8ZPZ9 EXPRESSION TAG SEQADV 2AP1 HIS A -17 UNP Q8ZPZ9 EXPRESSION TAG SEQADV 2AP1 SER A -16 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 SER A -15 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 GLY A -14 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 VAL A -13 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 ASP A -12 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 LEU A -11 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 GLY A -10 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 THR A -9 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 GLU A -8 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 ASN A -7 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 LEU A -6 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 TYR A -5 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 PHE A -4 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 GLN A -3 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 SER A -2 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 ASN A -1 UNP Q8ZPZ9 CLONING ARTIFACT SEQADV 2AP1 ALA A 0 UNP Q8ZPZ9 CLONING ARTIFACT SEQRES 1 A 327 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 327 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET TYR SEQRES 3 A 327 TYR GLY PHE ASP ILE GLY GLY THR LYS ILE ALA LEU GLY SEQRES 4 A 327 VAL PHE ASP SER THR ARG ARG LEU GLN TRP GLU LYS ARG SEQRES 5 A 327 VAL PRO THR PRO HIS THR SER TYR SER ALA PHE LEU ASP SEQRES 6 A 327 ALA VAL CYS GLU LEU VAL GLU GLU ALA ASP GLN ARG PHE SEQRES 7 A 327 GLY VAL LYS GLY SER VAL GLY ILE GLY ILE PRO GLY MET SEQRES 8 A 327 PRO GLU THR GLU ASP GLY THR LEU TYR ALA ALA ASN VAL SEQRES 9 A 327 PRO ALA ALA SER GLY LYS PRO LEU ARG ALA ASP LEU SER SEQRES 10 A 327 ALA ARG LEU ASP ARG ASP VAL ARG LEU ASP ASN ASP ALA SEQRES 11 A 327 ASN CYS PHE ALA LEU SER GLU ALA TRP ASP ASP GLU PHE SEQRES 12 A 327 THR GLN TYR PRO LEU VAL MET GLY LEU ILE LEU GLY THR SEQRES 13 A 327 GLY VAL GLY GLY GLY LEU VAL LEU ASN GLY LYS PRO ILE SEQRES 14 A 327 THR GLY GLN SER TYR ILE THR GLY GLU PHE GLY HIS MET SEQRES 15 A 327 ARG LEU PRO VAL ASP ALA LEU THR LEU MET GLY PHE ASP SEQRES 16 A 327 PHE PRO LEU ARG ARG CYS GLY CYS GLY GLN MET GLY CYS SEQRES 17 A 327 ILE GLU ASN TYR LEU SER GLY ARG GLY PHE ALA TRP LEU SEQRES 18 A 327 TYR GLN HIS TYR TYR ASP GLN SER LEU GLN ALA PRO GLU SEQRES 19 A 327 ILE ILE ALA LEU TRP GLU GLN GLY ASP GLU GLN ALA HIS SEQRES 20 A 327 ALA HIS VAL GLU ARG TYR LEU ASP LEU LEU ALA VAL CYS SEQRES 21 A 327 LEU GLY ASN ILE LEU THR ILE VAL ASP PRO ASP LEU LEU SEQRES 22 A 327 VAL ILE GLY GLY GLY LEU SER ASN PHE THR ALA ILE THR SEQRES 23 A 327 THR GLN LEU ALA GLU ARG LEU PRO ARG HIS LEU LEU PRO SEQRES 24 A 327 VAL ALA ARG ALA PRO ARG ILE GLU ARG ALA ARG HIS GLY SEQRES 25 A 327 ASP ALA GLY GLY MET ARG GLY ALA ALA PHE LEU HIS LEU SEQRES 26 A 327 THR ASP HET ZN A 304 1 HET NA A 305 1 HETNAM ZN ZINC ION HETNAM NA SODIUM ION FORMUL 2 ZN ZN 2+ FORMUL 3 NA NA 1+ FORMUL 4 HOH *290(H2 O) HELIX 1 1 SER A 35 GLY A 55 1 21 HELIX 2 2 PRO A 87 ASP A 97 1 11 HELIX 3 3 ASP A 105 TRP A 115 1 11 HELIX 4 4 GLU A 118 TYR A 122 5 5 HELIX 5 5 GLU A 154 MET A 158 5 5 HELIX 6 6 PRO A 161 GLY A 169 1 9 HELIX 7 7 ILE A 185 SER A 190 1 6 HELIX 8 8 SER A 190 ASP A 203 1 14 HELIX 9 9 GLN A 207 GLN A 217 1 11 HELIX 10 10 ASP A 219 ASP A 245 1 27 HELIX 11 11 GLY A 253 PHE A 258 5 6 HELIX 12 12 THR A 259 GLN A 264 1 6 HELIX 13 13 LEU A 265 LEU A 273 5 9 HELIX 14 14 ALA A 290 LEU A 299 1 10 SHEET 1 A 5 LEU A 23 PRO A 30 0 SHEET 2 A 5 LYS A 11 ASP A 18 -1 N VAL A 16 O GLN A 24 SHEET 3 A 5 MET A 1 ILE A 7 -1 N TYR A 2 O PHE A 17 SHEET 4 A 5 SER A 59 ILE A 64 1 O GLY A 63 N PHE A 5 SHEET 5 A 5 VAL A 100 ASN A 104 1 O ARG A 101 N VAL A 60 SHEET 1 B 5 LYS A 143 ILE A 145 0 SHEET 2 B 5 VAL A 134 LEU A 140 -1 N LEU A 138 O ILE A 145 SHEET 3 B 5 LEU A 124 LEU A 130 -1 N ILE A 129 O GLY A 135 SHEET 4 B 5 LEU A 248 GLY A 252 1 O GLY A 252 N LEU A 128 SHEET 5 B 5 ARG A 281 ARG A 284 1 O ARG A 281 N LEU A 249 LINK ND1 HIS A 157 ZN ZN A 304 1555 1555 2.13 LINK SG CYS A 177 ZN ZN A 304 1555 1555 2.33 LINK SG CYS A 179 ZN ZN A 304 1555 1555 2.35 LINK SG CYS A 184 ZN ZN A 304 1555 1555 2.33 LINK NA NA A 305 O HOH A 334 1555 1555 2.58 LINK NA NA A 305 O HOH A 358 1555 1555 2.63 LINK NA NA A 305 O HOH A 364 1555 1555 2.37 LINK NA NA A 305 O HOH A 390 1555 8555 2.46 LINK NA NA A 305 O HOH A 506 1555 1555 2.39 SITE 1 AC1 4 HIS A 157 CYS A 177 CYS A 179 CYS A 184 SITE 1 AC2 6 HOH A 334 HOH A 358 HOH A 364 HOH A 383 SITE 2 AC2 6 HOH A 390 HOH A 506 CRYST1 81.581 105.744 88.262 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011330 0.00000