data_2APT # _entry.id 2APT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2APT RCSB RCSB034169 WWPDB D_1000034169 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2APB 'the G17E/S54N/L81S variant of the murine T cell receptor V beta 8.2 domain' unspecified PDB 2APF 'the G17E/A52V/S54N/K66E/L81S variant of the murine T cell receptor V beta 8.2 domain' unspecified PDB 2APV 'the G17E/A52V/S54N/Q72H/E80V/L81S/T87S/G96V variant of the murine T cell receptor V beta 8.2 domain' unspecified PDB 2APW 'the G17E/A52V/S54N/K66E/E80V/L81S/T87S/G96V variant of the murine T cell receptor V beta 8.2 domain' unspecified PDB 2APX 'the G17E/A52V/S54N/K66E/Q72H/E80V/L81S/T87S/G96V variant of the murine T cell receptor V beta 8.2 domain' unspecified PDB 2AQ1 'T-Cell receptor V beta domain variant (G17E/A52V/S54N/K66E/E80V/L81S/T87S/G96V) complexed with superantigen SEC3 mutant' unspecified PDB 2AQ2 'T-Cell receptor V beta domain variant (G17E/A52V/S54N/K66E/L81S) complexed with superantigen SEC3 mutant' unspecified PDB 2AQ3 'T-Cell receptor V beta domain variant (G17E/L81S) complexed with superantigen SEC3 mutant' unspecified # _pdbx_database_status.entry_id 2APT _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-08-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cho, S.' 1 'Swaminathan, C.P.' 2 'Yang, J.' 3 'Kerzic, M.C.' 4 'Guan, R.' 5 'Kieke, M.C.' 6 'Kranz, D.M.' 7 'Mariuzza, R.A.' 8 'Sundberg, E.J.' 9 # _citation.id primary _citation.title 'Structural basis of affinity maturation and intramolecular cooperativity in a protein-protein interaction.' _citation.journal_abbrev Structure _citation.journal_volume 13 _citation.page_first 1775 _citation.page_last 1787 _citation.year 2005 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16338399 _citation.pdbx_database_id_DOI 10.1016/j.str.2005.08.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cho, S.' 1 primary 'Swaminathan, C.P.' 2 primary 'Yang, J.' 3 primary 'Kerzic, M.C.' 4 primary 'Guan, R.' 5 primary 'Kieke, M.C.' 6 primary 'Kranz, D.M.' 7 primary 'Mariuzza, R.A.' 8 primary 'Sundberg, E.J.' 9 # _cell.length_a 79.423 _cell.length_b 116.295 _cell.length_c 34.769 _cell.angle_alpha 90.00 _cell.angle_beta 110.17 _cell.angle_gamma 90.00 _cell.entry_id 2APT _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 2APT _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 5 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'T-cell receptor beta chain V' 12156.431 2 ? 'G17E, S54N, K66E, Q72H, E80V, L81S, T87S, G96V' ? ? 2 non-polymer syn 'MALONIC ACID' 104.061 1 ? ? ? ? 3 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ILEAAVTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGNTEKGDIPDGYEASRPSHEQFSLIL VSATPSQSSVYFCASGVGGTLYFGAGTRLSVL ; _entity_poly.pdbx_seq_one_letter_code_can ;ILEAAVTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGNTEKGDIPDGYEASRPSHEQFSLIL VSATPSQSSVYFCASGVGGTLYFGAGTRLSVL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 LEU n 1 3 GLU n 1 4 ALA n 1 5 ALA n 1 6 VAL n 1 7 THR n 1 8 GLN n 1 9 SER n 1 10 PRO n 1 11 ARG n 1 12 ASN n 1 13 LYS n 1 14 VAL n 1 15 ALA n 1 16 VAL n 1 17 THR n 1 18 GLY n 1 19 GLU n 1 20 LYS n 1 21 VAL n 1 22 THR n 1 23 LEU n 1 24 SER n 1 25 CYS n 1 26 GLN n 1 27 GLN n 1 28 THR n 1 29 ASN n 1 30 ASN n 1 31 HIS n 1 32 ASN n 1 33 ASN n 1 34 MET n 1 35 TYR n 1 36 TRP n 1 37 TYR n 1 38 ARG n 1 39 GLN n 1 40 ASP n 1 41 THR n 1 42 GLY n 1 43 HIS n 1 44 GLY n 1 45 LEU n 1 46 ARG n 1 47 LEU n 1 48 ILE n 1 49 HIS n 1 50 TYR n 1 51 SER n 1 52 TYR n 1 53 GLY n 1 54 ALA n 1 55 GLY n 1 56 ASN n 1 57 THR n 1 58 GLU n 1 59 LYS n 1 60 GLY n 1 61 ASP n 1 62 ILE n 1 63 PRO n 1 64 ASP n 1 65 GLY n 1 66 TYR n 1 67 GLU n 1 68 ALA n 1 69 SER n 1 70 ARG n 1 71 PRO n 1 72 SER n 1 73 HIS n 1 74 GLU n 1 75 GLN n 1 76 PHE n 1 77 SER n 1 78 LEU n 1 79 ILE n 1 80 LEU n 1 81 VAL n 1 82 SER n 1 83 ALA n 1 84 THR n 1 85 PRO n 1 86 SER n 1 87 GLN n 1 88 SER n 1 89 SER n 1 90 VAL n 1 91 TYR n 1 92 PHE n 1 93 CYS n 1 94 ALA n 1 95 SER n 1 96 GLY n 1 97 VAL n 1 98 GLY n 1 99 GLY n 1 100 THR n 1 101 LEU n 1 102 TYR n 1 103 PHE n 1 104 GLY n 1 105 ALA n 1 106 GLY n 1 107 THR n 1 108 ARG n 1 109 LEU n 1 110 SER n 1 111 VAL n 1 112 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pT7-7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code A2NAI0_RAT _struct_ref.pdbx_db_accession A2NAI0 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2APT A 3 ? 95 ? A2NAI0 2 ? 94 ? 1 94 2 1 2APT B 3 ? 95 ? A2NAI0 2 ? 94 ? 1 94 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLA non-polymer . 'MALONIC ACID' 'DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; METHANEDICARBOXYLIC ACID' 'C3 H4 O4' 104.061 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2APT _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 59.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2.0 M Sodium Malonate, 0.2 % dioxane, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2003-09-10 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'OSMIC MIRRORS' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2APT _reflns.d_resolution_low 34.4 _reflns.d_resolution_high 2.0 _reflns.number_obs 18476 _reflns.percent_possible_obs 92.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 4 _reflns.number_all 20008 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 65.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 34.4 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 92.360 _refine.ls_number_reflns_obs 18476 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;The residues Gly 63 and Tyr 65 of chain B should be linked according to the sequence database reference. However the C-N bond distance is 2.00 A ; _refine.ls_R_factor_all 0.177 _refine.ls_R_factor_R_work 0.175 _refine.ls_R_factor_R_free 0.21 _refine.ls_percent_reflns_R_free 5.200 _refine.ls_number_reflns_R_free 960 _refine.B_iso_mean 39.722 _refine.aniso_B[1][1] -0.110 _refine.aniso_B[2][2] -0.960 _refine.aniso_B[3][3] 0.700 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.530 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.972 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.pdbx_overall_ESU_R 0.151 _refine.pdbx_overall_ESU_R_Free 0.139 _refine.overall_SU_ML 0.103 _refine.overall_SU_B 3.828 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2APT _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 20008 _refine.ls_R_factor_obs 0.177 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1662 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 1764 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 34.4 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1704 0.018 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2309 1.879 1.934 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 212 6.810 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 78 39.369 23.590 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 254 18.699 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 12.668 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 250 0.148 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1320 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 601 0.279 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1119 0.316 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 109 0.181 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 14 0.143 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 7 0.126 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1092 1.271 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1706 2.201 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 696 3.581 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 603 5.482 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 65.370 _refine_ls_shell.number_reflns_R_work 922 _refine_ls_shell.R_factor_R_work 0.283 _refine_ls_shell.R_factor_R_free 0.315 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 972 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2APT _struct.title 'Crystal Structure of the G17E/S54N/K66E/Q72H/E80V/L81S/T87S/G96V variant of the murine T cell receptor V beta 8.2 domain' _struct.pdbx_descriptor 'T-cell receptor beta chain V' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2APT _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'the murine T cell receptor V beta 8.2 domain, Immune system' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 84 ? SER A 88 ? THR A 83 SER A 87 5 ? 5 HELX_P HELX_P2 2 THR B 84 ? SER B 88 ? THR B 83 SER B 87 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 25 SG ? ? ? 1_555 A CYS 93 SG ? ? A CYS 23 A CYS 92 1_555 ? ? ? ? ? ? ? 1.995 ? disulf2 disulf ? ? B CYS 25 SG ? ? ? 1_555 B CYS 93 SG ? ? B CYS 23 B CYS 92 1_555 ? ? ? ? ? ? ? 1.968 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 9 A . ? SER 7 A PRO 10 A ? PRO 8 A 1 -8.65 2 SER 9 B . ? SER 7 B PRO 10 B ? PRO 8 B 1 -2.85 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 4 ? E ? 6 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel F 1 2 ? parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 6 ? SER A 9 ? VAL A 4 SER A 7 A 2 VAL A 21 ? GLN A 27 ? VAL A 19 GLN A 25 A 3 GLN A 75 ? LEU A 80 ? GLN A 74 LEU A 79 A 4 TYR A 66 ? SER A 69 ? TYR A 65 SER A 68 B 1 ASN A 12 ? VAL A 16 ? ASN A 10 VAL A 14 B 2 THR A 107 ? LEU A 112 ? THR A 112 LEU A 117 B 3 SER A 89 ? VAL A 97 ? SER A 88 VAL A 96 B 4 ASN A 33 ? ASP A 40 ? ASN A 31 ASP A 38 B 5 GLY A 44 ? SER A 51 ? GLY A 42 SER A 49 B 6 GLU A 58 ? LYS A 59 ? GLU A 56 LYS A 57 C 1 ASN A 12 ? VAL A 16 ? ASN A 10 VAL A 14 C 2 THR A 107 ? LEU A 112 ? THR A 112 LEU A 117 C 3 SER A 89 ? VAL A 97 ? SER A 88 VAL A 96 C 4 THR A 100 ? PHE A 103 ? THR A 99 PHE A 108 D 1 VAL B 6 ? SER B 9 ? VAL B 4 SER B 7 D 2 VAL B 21 ? GLN B 27 ? VAL B 19 GLN B 25 D 3 GLN B 75 ? LEU B 80 ? GLN B 74 LEU B 79 D 4 TYR B 66 ? SER B 72 ? TYR B 65 SER B 71 E 1 ASN B 12 ? VAL B 16 ? ASN B 10 VAL B 14 E 2 THR B 107 ? LEU B 112 ? THR B 112 LEU B 117 E 3 SER B 89 ? GLY B 96 ? SER B 88 GLY B 95 E 4 ASN B 33 ? ASP B 40 ? ASN B 31 ASP B 38 E 5 GLY B 44 ? SER B 51 ? GLY B 42 SER B 49 E 6 GLU B 58 ? LYS B 59 ? GLU B 56 LYS B 57 F 1 ASN B 12 ? VAL B 16 ? ASN B 10 VAL B 14 F 2 THR B 107 ? LEU B 112 ? THR B 112 LEU B 117 F 3 SER B 89 ? GLY B 96 ? SER B 88 GLY B 95 F 4 TYR B 102 ? PHE B 103 ? TYR B 101 PHE B 108 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 7 ? N THR A 5 O GLN A 26 ? O GLN A 24 A 2 3 N LEU A 23 ? N LEU A 21 O LEU A 78 ? O LEU A 77 A 3 4 O SER A 77 ? O SER A 76 N SER A 69 ? N SER A 68 B 1 2 N ALA A 15 ? N ALA A 13 O LEU A 112 ? O LEU A 117 B 2 3 O LEU A 109 ? O LEU A 114 N SER A 89 ? N SER A 88 B 3 4 O VAL A 90 ? O VAL A 89 N GLN A 39 ? N GLN A 37 B 4 5 N TRP A 36 ? N TRP A 34 O ILE A 48 ? O ILE A 46 B 5 6 N TYR A 50 ? N TYR A 48 O GLU A 58 ? O GLU A 56 C 1 2 N ALA A 15 ? N ALA A 13 O LEU A 112 ? O LEU A 117 C 2 3 O LEU A 109 ? O LEU A 114 N SER A 89 ? N SER A 88 C 3 4 N SER A 95 ? N SER A 94 O TYR A 102 ? O TYR A 101 D 1 2 N THR B 7 ? N THR B 5 O GLN B 26 ? O GLN B 24 D 2 3 N VAL B 21 ? N VAL B 19 O LEU B 80 ? O LEU B 79 D 3 4 O ILE B 79 ? O ILE B 78 N GLU B 67 ? N GLU B 66 E 1 2 N ALA B 15 ? N ALA B 13 O LEU B 112 ? O LEU B 117 E 2 3 O THR B 107 ? O THR B 112 N TYR B 91 ? N TYR B 90 E 3 4 O PHE B 92 ? O PHE B 91 N TYR B 37 ? N TYR B 35 E 4 5 N TRP B 36 ? N TRP B 34 O ILE B 48 ? O ILE B 46 E 5 6 N TYR B 50 ? N TYR B 48 O GLU B 58 ? O GLU B 56 F 1 2 N ALA B 15 ? N ALA B 13 O LEU B 112 ? O LEU B 117 F 2 3 O THR B 107 ? O THR B 112 N TYR B 91 ? N TYR B 90 F 3 4 N SER B 95 ? N SER B 94 O TYR B 102 ? O TYR B 101 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE MLA B 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 PRO A 10 ? PRO A 8 . ? 1_555 ? 2 AC1 7 ASN A 12 ? ASN A 10 . ? 1_555 ? 3 AC1 7 PRO B 10 ? PRO B 8 . ? 1_555 ? 4 AC1 7 ARG B 11 ? ARG B 9 . ? 1_555 ? 5 AC1 7 ASN B 12 ? ASN B 10 . ? 1_555 ? 6 AC1 7 HOH E . ? HOH B 243 . ? 1_555 ? 7 AC1 7 HOH E . ? HOH B 244 . ? 1_555 ? # _atom_sites.entry_id 2APT _atom_sites.fract_transf_matrix[1][1] 0.01259 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00463 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.00860 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.03064 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 -1 ? ? ? A . n A 1 2 LEU 2 0 ? ? ? A . n A 1 3 GLU 3 1 ? ? ? A . n A 1 4 ALA 4 2 2 ALA ALA A . n A 1 5 ALA 5 3 3 ALA ALA A . n A 1 6 VAL 6 4 4 VAL VAL A . n A 1 7 THR 7 5 5 THR THR A . n A 1 8 GLN 8 6 6 GLN GLN A . n A 1 9 SER 9 7 7 SER SER A . n A 1 10 PRO 10 8 8 PRO PRO A . n A 1 11 ARG 11 9 9 ARG ARG A . n A 1 12 ASN 12 10 10 ASN ASN A . n A 1 13 LYS 13 11 11 LYS LYS A . n A 1 14 VAL 14 12 12 VAL VAL A . n A 1 15 ALA 15 13 13 ALA ALA A . n A 1 16 VAL 16 14 14 VAL VAL A . n A 1 17 THR 17 15 15 THR THR A . n A 1 18 GLY 18 16 16 GLY GLY A . n A 1 19 GLU 19 17 17 GLU GLU A . n A 1 20 LYS 20 18 18 LYS LYS A . n A 1 21 VAL 21 19 19 VAL VAL A . n A 1 22 THR 22 20 20 THR THR A . n A 1 23 LEU 23 21 21 LEU LEU A . n A 1 24 SER 24 22 22 SER SER A . n A 1 25 CYS 25 23 23 CYS CYS A . n A 1 26 GLN 26 24 24 GLN GLN A . n A 1 27 GLN 27 25 25 GLN GLN A . n A 1 28 THR 28 26 26 THR THR A . n A 1 29 ASN 29 27 27 ASN ASN A . n A 1 30 ASN 30 28 28 ASN ASN A . n A 1 31 HIS 31 29 29 HIS HIS A . n A 1 32 ASN 32 30 30 ASN ASN A . n A 1 33 ASN 33 31 31 ASN ASN A . n A 1 34 MET 34 32 32 MET MET A . n A 1 35 TYR 35 33 33 TYR TYR A . n A 1 36 TRP 36 34 34 TRP TRP A . n A 1 37 TYR 37 35 35 TYR TYR A . n A 1 38 ARG 38 36 36 ARG ARG A . n A 1 39 GLN 39 37 37 GLN GLN A . n A 1 40 ASP 40 38 38 ASP ASP A . n A 1 41 THR 41 39 39 THR THR A . n A 1 42 GLY 42 40 40 GLY GLY A . n A 1 43 HIS 43 41 41 HIS HIS A . n A 1 44 GLY 44 42 42 GLY GLY A . n A 1 45 LEU 45 43 43 LEU LEU A . n A 1 46 ARG 46 44 44 ARG ARG A . n A 1 47 LEU 47 45 45 LEU LEU A . n A 1 48 ILE 48 46 46 ILE ILE A . n A 1 49 HIS 49 47 47 HIS HIS A . n A 1 50 TYR 50 48 48 TYR TYR A . n A 1 51 SER 51 49 49 SER SER A . n A 1 52 TYR 52 50 50 TYR TYR A . n A 1 53 GLY 53 51 51 GLY GLY A . n A 1 54 ALA 54 52 52 ALA ALA A . n A 1 55 GLY 55 53 53 GLY GLY A . n A 1 56 ASN 56 54 54 ASN ASN A . n A 1 57 THR 57 55 55 THR THR A . n A 1 58 GLU 58 56 56 GLU GLU A . n A 1 59 LYS 59 57 57 LYS LYS A . n A 1 60 GLY 60 58 58 GLY GLY A . n A 1 61 ASP 61 59 59 ASP ASP A . n A 1 62 ILE 62 60 60 ILE ILE A . n A 1 63 PRO 63 61 61 PRO PRO A . n A 1 64 ASP 64 62 62 ASP ASP A . n A 1 65 GLY 65 63 63 GLY GLY A . n A 1 66 TYR 66 65 65 TYR TYR A . n A 1 67 GLU 67 66 66 GLU GLU A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 SER 69 68 68 SER SER A . n A 1 70 ARG 70 69 69 ARG ARG A . n A 1 71 PRO 71 70 70 PRO PRO A . n A 1 72 SER 72 71 71 SER SER A . n A 1 73 HIS 73 72 72 HIS HIS A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 GLN 75 74 74 GLN GLN A . n A 1 76 PHE 76 75 75 PHE PHE A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 SER 82 81 81 SER SER A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 THR 84 83 83 THR THR A . n A 1 85 PRO 85 84 84 PRO PRO A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 GLN 87 86 86 GLN GLN A . n A 1 88 SER 88 87 87 SER SER A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 VAL 90 89 89 VAL VAL A . n A 1 91 TYR 91 90 90 TYR TYR A . n A 1 92 PHE 92 91 91 PHE PHE A . n A 1 93 CYS 93 92 92 CYS CYS A . n A 1 94 ALA 94 93 93 ALA ALA A . n A 1 95 SER 95 94 94 SER SER A . n A 1 96 GLY 96 95 95 GLY GLY A . n A 1 97 VAL 97 96 96 VAL VAL A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 GLY 99 98 98 GLY GLY A . n A 1 100 THR 100 99 99 THR THR A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 TYR 102 101 101 TYR TYR A . n A 1 103 PHE 103 108 108 PHE PHE A . n A 1 104 GLY 104 109 109 GLY GLY A . n A 1 105 ALA 105 110 110 ALA ALA A . n A 1 106 GLY 106 111 111 GLY GLY A . n A 1 107 THR 107 112 112 THR THR A . n A 1 108 ARG 108 113 113 ARG ARG A . n A 1 109 LEU 109 114 114 LEU LEU A . n A 1 110 SER 110 115 115 SER SER A . n A 1 111 VAL 111 116 116 VAL VAL A . n A 1 112 LEU 112 117 117 LEU LEU A . n B 1 1 ILE 1 -1 ? ? ? B . n B 1 2 LEU 2 0 ? ? ? B . n B 1 3 GLU 3 1 ? ? ? B . n B 1 4 ALA 4 2 2 ALA ALA B . n B 1 5 ALA 5 3 3 ALA ALA B . n B 1 6 VAL 6 4 4 VAL VAL B . n B 1 7 THR 7 5 5 THR THR B . n B 1 8 GLN 8 6 6 GLN GLN B . n B 1 9 SER 9 7 7 SER SER B . n B 1 10 PRO 10 8 8 PRO PRO B . n B 1 11 ARG 11 9 9 ARG ARG B . n B 1 12 ASN 12 10 10 ASN ASN B . n B 1 13 LYS 13 11 11 LYS LYS B . n B 1 14 VAL 14 12 12 VAL VAL B . n B 1 15 ALA 15 13 13 ALA ALA B . n B 1 16 VAL 16 14 14 VAL VAL B . n B 1 17 THR 17 15 15 THR THR B . n B 1 18 GLY 18 16 16 GLY GLY B . n B 1 19 GLU 19 17 17 GLU GLU B . n B 1 20 LYS 20 18 18 LYS LYS B . n B 1 21 VAL 21 19 19 VAL VAL B . n B 1 22 THR 22 20 20 THR THR B . n B 1 23 LEU 23 21 21 LEU LEU B . n B 1 24 SER 24 22 22 SER SER B . n B 1 25 CYS 25 23 23 CYS CYS B . n B 1 26 GLN 26 24 24 GLN GLN B . n B 1 27 GLN 27 25 25 GLN GLN B . n B 1 28 THR 28 26 26 THR THR B . n B 1 29 ASN 29 27 27 ASN ASN B . n B 1 30 ASN 30 28 28 ASN ASN B . n B 1 31 HIS 31 29 29 HIS HIS B . n B 1 32 ASN 32 30 30 ASN ASN B . n B 1 33 ASN 33 31 31 ASN ASN B . n B 1 34 MET 34 32 32 MET MET B . n B 1 35 TYR 35 33 33 TYR TYR B . n B 1 36 TRP 36 34 34 TRP TRP B . n B 1 37 TYR 37 35 35 TYR TYR B . n B 1 38 ARG 38 36 36 ARG ARG B . n B 1 39 GLN 39 37 37 GLN GLN B . n B 1 40 ASP 40 38 38 ASP ASP B . n B 1 41 THR 41 39 39 THR THR B . n B 1 42 GLY 42 40 40 GLY GLY B . n B 1 43 HIS 43 41 41 HIS HIS B . n B 1 44 GLY 44 42 42 GLY GLY B . n B 1 45 LEU 45 43 43 LEU LEU B . n B 1 46 ARG 46 44 44 ARG ARG B . n B 1 47 LEU 47 45 45 LEU LEU B . n B 1 48 ILE 48 46 46 ILE ILE B . n B 1 49 HIS 49 47 47 HIS HIS B . n B 1 50 TYR 50 48 48 TYR TYR B . n B 1 51 SER 51 49 49 SER SER B . n B 1 52 TYR 52 50 50 TYR TYR B . n B 1 53 GLY 53 51 51 GLY GLY B . n B 1 54 ALA 54 52 52 ALA ALA B . n B 1 55 GLY 55 53 53 GLY GLY B . n B 1 56 ASN 56 54 54 ASN ASN B . n B 1 57 THR 57 55 55 THR THR B . n B 1 58 GLU 58 56 56 GLU GLU B . n B 1 59 LYS 59 57 57 LYS LYS B . n B 1 60 GLY 60 58 58 GLY GLY B . n B 1 61 ASP 61 59 59 ASP ASP B . n B 1 62 ILE 62 60 60 ILE ILE B . n B 1 63 PRO 63 61 61 PRO PRO B . n B 1 64 ASP 64 62 62 ASP ASP B . n B 1 65 GLY 65 63 63 GLY GLY B . n B 1 66 TYR 66 65 65 TYR TYR B . n B 1 67 GLU 67 66 66 GLU GLU B . n B 1 68 ALA 68 67 67 ALA ALA B . n B 1 69 SER 69 68 68 SER SER B . n B 1 70 ARG 70 69 69 ARG ARG B . n B 1 71 PRO 71 70 70 PRO PRO B . n B 1 72 SER 72 71 71 SER SER B . n B 1 73 HIS 73 72 72 HIS HIS B . n B 1 74 GLU 74 73 73 GLU GLU B . n B 1 75 GLN 75 74 74 GLN GLN B . n B 1 76 PHE 76 75 75 PHE PHE B . n B 1 77 SER 77 76 76 SER SER B . n B 1 78 LEU 78 77 77 LEU LEU B . n B 1 79 ILE 79 78 78 ILE ILE B . n B 1 80 LEU 80 79 79 LEU LEU B . n B 1 81 VAL 81 80 80 VAL VAL B . n B 1 82 SER 82 81 81 SER SER B . n B 1 83 ALA 83 82 82 ALA ALA B . n B 1 84 THR 84 83 83 THR THR B . n B 1 85 PRO 85 84 84 PRO PRO B . n B 1 86 SER 86 85 85 SER SER B . n B 1 87 GLN 87 86 86 GLN GLN B . n B 1 88 SER 88 87 87 SER SER B . n B 1 89 SER 89 88 88 SER SER B . n B 1 90 VAL 90 89 89 VAL VAL B . n B 1 91 TYR 91 90 90 TYR TYR B . n B 1 92 PHE 92 91 91 PHE PHE B . n B 1 93 CYS 93 92 92 CYS CYS B . n B 1 94 ALA 94 93 93 ALA ALA B . n B 1 95 SER 95 94 94 SER SER B . n B 1 96 GLY 96 95 95 GLY GLY B . n B 1 97 VAL 97 96 96 VAL VAL B . n B 1 98 GLY 98 97 97 GLY GLY B . n B 1 99 GLY 99 98 98 GLY GLY B . n B 1 100 THR 100 99 99 THR THR B . n B 1 101 LEU 101 100 100 LEU LEU B . n B 1 102 TYR 102 101 101 TYR TYR B . n B 1 103 PHE 103 108 108 PHE PHE B . n B 1 104 GLY 104 109 109 GLY GLY B . n B 1 105 ALA 105 110 110 ALA ALA B . n B 1 106 GLY 106 111 111 GLY GLY B . n B 1 107 THR 107 112 112 THR THR B . n B 1 108 ARG 108 113 113 ARG ARG B . n B 1 109 LEU 109 114 114 LEU LEU B . n B 1 110 SER 110 115 115 SER SER B . n B 1 111 VAL 111 116 116 VAL VAL B . n B 1 112 LEU 112 117 117 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLA 1 200 200 MLA MLA B . D 3 HOH 1 118 3 HOH HOH A . D 3 HOH 2 119 4 HOH HOH A . D 3 HOH 3 120 5 HOH HOH A . D 3 HOH 4 121 8 HOH HOH A . D 3 HOH 5 122 9 HOH HOH A . D 3 HOH 6 123 10 HOH HOH A . D 3 HOH 7 124 11 HOH HOH A . D 3 HOH 8 125 13 HOH HOH A . D 3 HOH 9 126 15 HOH HOH A . D 3 HOH 10 127 16 HOH HOH A . D 3 HOH 11 128 17 HOH HOH A . D 3 HOH 12 129 19 HOH HOH A . D 3 HOH 13 130 20 HOH HOH A . D 3 HOH 14 131 21 HOH HOH A . D 3 HOH 15 132 22 HOH HOH A . D 3 HOH 16 133 28 HOH HOH A . D 3 HOH 17 134 29 HOH HOH A . D 3 HOH 18 135 30 HOH HOH A . D 3 HOH 19 136 33 HOH HOH A . D 3 HOH 20 137 35 HOH HOH A . D 3 HOH 21 138 36 HOH HOH A . D 3 HOH 22 139 38 HOH HOH A . D 3 HOH 23 140 41 HOH HOH A . D 3 HOH 24 141 44 HOH HOH A . D 3 HOH 25 142 45 HOH HOH A . D 3 HOH 26 143 46 HOH HOH A . D 3 HOH 27 144 47 HOH HOH A . D 3 HOH 28 145 48 HOH HOH A . D 3 HOH 29 146 49 HOH HOH A . D 3 HOH 30 147 54 HOH HOH A . D 3 HOH 31 148 57 HOH HOH A . D 3 HOH 32 149 58 HOH HOH A . D 3 HOH 33 150 59 HOH HOH A . D 3 HOH 34 151 60 HOH HOH A . D 3 HOH 35 152 63 HOH HOH A . D 3 HOH 36 153 65 HOH HOH A . D 3 HOH 37 154 69 HOH HOH A . D 3 HOH 38 155 71 HOH HOH A . D 3 HOH 39 156 72 HOH HOH A . D 3 HOH 40 157 73 HOH HOH A . D 3 HOH 41 158 74 HOH HOH A . D 3 HOH 42 159 76 HOH HOH A . D 3 HOH 43 160 79 HOH HOH A . D 3 HOH 44 161 84 HOH HOH A . D 3 HOH 45 162 89 HOH HOH A . D 3 HOH 46 163 90 HOH HOH A . D 3 HOH 47 164 92 HOH HOH A . D 3 HOH 48 165 93 HOH HOH A . D 3 HOH 49 166 94 HOH HOH A . D 3 HOH 50 167 95 HOH HOH A . E 3 HOH 1 201 1 HOH HOH B . E 3 HOH 2 202 2 HOH HOH B . E 3 HOH 3 203 6 HOH HOH B . E 3 HOH 4 204 7 HOH HOH B . E 3 HOH 5 205 12 HOH HOH B . E 3 HOH 6 206 14 HOH HOH B . E 3 HOH 7 207 18 HOH HOH B . E 3 HOH 8 208 23 HOH HOH B . E 3 HOH 9 209 24 HOH HOH B . E 3 HOH 10 210 25 HOH HOH B . E 3 HOH 11 211 26 HOH HOH B . E 3 HOH 12 212 27 HOH HOH B . E 3 HOH 13 213 31 HOH HOH B . E 3 HOH 14 214 32 HOH HOH B . E 3 HOH 15 215 34 HOH HOH B . E 3 HOH 16 216 37 HOH HOH B . E 3 HOH 17 217 39 HOH HOH B . E 3 HOH 18 218 40 HOH HOH B . E 3 HOH 19 219 42 HOH HOH B . E 3 HOH 20 220 43 HOH HOH B . E 3 HOH 21 221 50 HOH HOH B . E 3 HOH 22 222 51 HOH HOH B . E 3 HOH 23 223 52 HOH HOH B . E 3 HOH 24 224 53 HOH HOH B . E 3 HOH 25 225 55 HOH HOH B . E 3 HOH 26 226 56 HOH HOH B . E 3 HOH 27 227 61 HOH HOH B . E 3 HOH 28 228 62 HOH HOH B . E 3 HOH 29 229 64 HOH HOH B . E 3 HOH 30 230 66 HOH HOH B . E 3 HOH 31 231 67 HOH HOH B . E 3 HOH 32 232 68 HOH HOH B . E 3 HOH 33 233 70 HOH HOH B . E 3 HOH 34 234 75 HOH HOH B . E 3 HOH 35 235 77 HOH HOH B . E 3 HOH 36 236 78 HOH HOH B . E 3 HOH 37 237 80 HOH HOH B . E 3 HOH 38 238 81 HOH HOH B . E 3 HOH 39 239 82 HOH HOH B . E 3 HOH 40 240 83 HOH HOH B . E 3 HOH 41 241 85 HOH HOH B . E 3 HOH 42 242 86 HOH HOH B . E 3 HOH 43 243 87 HOH HOH B . E 3 HOH 44 244 88 HOH HOH B . E 3 HOH 45 245 91 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D 2 1 B,C,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-21 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2015-04-29 5 'Structure model' 1 4 2017-10-11 6 'Structure model' 1 5 2018-04-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' 4 5 'Structure model' 'Refinement description' 5 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 6 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.type' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 3 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CrystalClear '(MSC/RIGAKU)' ? ? ? ? 'data reduction' ? ? ? 5 d*TREK . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? 7 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE NO SUITABLE SEQUENCE DATABASE REFERENCE WAS AVAILABLE AT THE TIME OF PROCESSING THIS FILE. ; # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A GLY 63 ? ? N A TYR 65 ? ? 1.518 1.336 0.182 0.023 Y 2 1 C A TYR 101 ? ? N A PHE 108 ? ? 1.517 1.336 0.181 0.023 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 43 ? ? CB A LEU 43 ? ? CG A LEU 43 ? ? 132.36 115.30 17.06 2.30 N 2 1 O A GLY 63 ? ? C A GLY 63 ? ? N A TYR 65 ? ? 105.76 122.70 -16.94 1.60 Y 3 1 CB A VAL 96 ? ? CA A VAL 96 ? ? C A VAL 96 ? ? 97.90 111.40 -13.50 1.90 N 4 1 O B TYR 101 ? ? C B TYR 101 ? ? N B PHE 108 ? ? 109.01 122.70 -13.69 1.60 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 88 ? ? -172.48 -178.81 2 1 ILE B 60 ? ? -140.18 58.48 3 1 SER B 88 ? ? -173.54 -178.33 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 GLY A 63 ? ? 21.67 2 1 TYR B 101 ? ? 12.09 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 B _pdbx_validate_polymer_linkage.auth_comp_id_1 GLY _pdbx_validate_polymer_linkage.auth_seq_id_1 63 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 B _pdbx_validate_polymer_linkage.auth_comp_id_2 TYR _pdbx_validate_polymer_linkage.auth_seq_id_2 65 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 2.00 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE -1 ? A ILE 1 2 1 Y 1 A LEU 0 ? A LEU 2 3 1 Y 1 A GLU 1 ? A GLU 3 4 1 Y 1 B ILE -1 ? B ILE 1 5 1 Y 1 B LEU 0 ? B LEU 2 6 1 Y 1 B GLU 1 ? B GLU 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MALONIC ACID' MLA 3 water HOH #