data_2APV # _entry.id 2APV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2APV RCSB RCSB034171 WWPDB D_1000034171 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2APB 'the G17E/S54N/L81S variant of the murine T cell receptor V beta 8.2 domain' unspecified PDB 2APF 'the G17E/A52V/S54N/K66E/L81S variant of the murine T cell receptor V beta 8.2 domain' unspecified PDB 2APT 'the G17E/S54N/K66E/Q72H/E80V/L81S/T87S/G96V variant of the murine T cell receptor V beta 8.2' unspecified PDB 2APW 'the G17E/A52V/S54N/K66E/E80V/L81S/T87S/G96V variant of the murine T cell receptor V beta 8.2 domain' unspecified PDB 2APX 'the G17E/A52V/S54N/K66E/Q72H/E80V/L81S/T87S/G96V variant of the murine T cell receptor V beta 8.2 domain' unspecified PDB 2AQ1 'T-Cell receptor V beta domain variant (G17E/A52V/S54N/K66E/E80V/L81S/T87S/G96V) complexed with superantigen SEC3 mutant' unspecified PDB 2AQ2 'T-Cell receptor V beta domain variant (G17E/A52V/S54N/K66E/L81S) complexed with superantigen SEC3 mutant' unspecified PDB 2AQ3 'T-Cell receptor V beta domain variant (G17E/L81S) complexed with superantigen SEC3 mutant' unspecified # _pdbx_database_status.entry_id 2APV _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-08-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cho, S.' 1 'Swaminathan, C.P.' 2 'Yang, J.' 3 'Kerzic, M.C.' 4 'Guan, R.' 5 'Kieke, M.C.' 6 'Kranz, D.M.' 7 'Mariuzza, R.A.' 8 'Sundberg, E.J.' 9 # _citation.id primary _citation.title 'Structural basis of affinity maturation and intramolecular cooperativity in a protein-protein interaction.' _citation.journal_abbrev Structure _citation.journal_volume 13 _citation.page_first 1775 _citation.page_last 1787 _citation.year 2005 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16338399 _citation.pdbx_database_id_DOI 10.1016/j.str.2005.08.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cho, S.' 1 primary 'Swaminathan, C.P.' 2 primary 'Yang, J.' 3 primary 'Kerzic, M.C.' 4 primary 'Guan, R.' 5 primary 'Kieke, M.C.' 6 primary 'Kranz, D.M.' 7 primary 'Mariuzza, R.A.' 8 primary 'Sundberg, E.J.' 9 # _cell.length_a 32.502 _cell.length_b 74.696 _cell.length_c 113.591 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 2APV _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.entry_id 2APV _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 24 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'T cell receptor beta chain V' 12184.551 1 ? 'G17E, A52V, S54N, Q72H, E80V, L81S, T87S, G96V' ? ? 2 non-polymer syn 'MALONIC ACID' 104.061 3 ? ? ? ? 3 water nat water 18.015 162 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ILEAAVTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYKASRPSHEQFSLIL VSATPSQSSVYFCASGVGGTLYFGAGTRLSVL ; _entity_poly.pdbx_seq_one_letter_code_can ;ILEAAVTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYKASRPSHEQFSLIL VSATPSQSSVYFCASGVGGTLYFGAGTRLSVL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 LEU n 1 3 GLU n 1 4 ALA n 1 5 ALA n 1 6 VAL n 1 7 THR n 1 8 GLN n 1 9 SER n 1 10 PRO n 1 11 ARG n 1 12 ASN n 1 13 LYS n 1 14 VAL n 1 15 ALA n 1 16 VAL n 1 17 THR n 1 18 GLY n 1 19 GLU n 1 20 LYS n 1 21 VAL n 1 22 THR n 1 23 LEU n 1 24 SER n 1 25 CYS n 1 26 GLN n 1 27 GLN n 1 28 THR n 1 29 ASN n 1 30 ASN n 1 31 HIS n 1 32 ASN n 1 33 ASN n 1 34 MET n 1 35 TYR n 1 36 TRP n 1 37 TYR n 1 38 ARG n 1 39 GLN n 1 40 ASP n 1 41 THR n 1 42 GLY n 1 43 HIS n 1 44 GLY n 1 45 LEU n 1 46 ARG n 1 47 LEU n 1 48 ILE n 1 49 HIS n 1 50 TYR n 1 51 SER n 1 52 TYR n 1 53 GLY n 1 54 VAL n 1 55 GLY n 1 56 ASN n 1 57 THR n 1 58 GLU n 1 59 LYS n 1 60 GLY n 1 61 ASP n 1 62 ILE n 1 63 PRO n 1 64 ASP n 1 65 GLY n 1 66 TYR n 1 67 LYS n 1 68 ALA n 1 69 SER n 1 70 ARG n 1 71 PRO n 1 72 SER n 1 73 HIS n 1 74 GLU n 1 75 GLN n 1 76 PHE n 1 77 SER n 1 78 LEU n 1 79 ILE n 1 80 LEU n 1 81 VAL n 1 82 SER n 1 83 ALA n 1 84 THR n 1 85 PRO n 1 86 SER n 1 87 GLN n 1 88 SER n 1 89 SER n 1 90 VAL n 1 91 TYR n 1 92 PHE n 1 93 CYS n 1 94 ALA n 1 95 SER n 1 96 GLY n 1 97 VAL n 1 98 GLY n 1 99 GLY n 1 100 THR n 1 101 LEU n 1 102 TYR n 1 103 PHE n 1 104 GLY n 1 105 ALA n 1 106 GLY n 1 107 THR n 1 108 ARG n 1 109 LEU n 1 110 SER n 1 111 VAL n 1 112 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pT7-7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code A2NAI0_RAT _struct_ref.pdbx_db_accession A2NAI0 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2APV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 95 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A2NAI0 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 94 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 94 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLA non-polymer . 'MALONIC ACID' 'DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; METHANEDICARBOXYLIC ACID' 'C3 H4 O4' 104.061 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2APV _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.3 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2.0 M Sodium Malonate, 0.2 % dioxane, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2003-10-10 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'OSMIC MIRRORS' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2APV _reflns.d_resolution_low 31.2 _reflns.d_resolution_high 1.538 _reflns.number_obs 21078 _reflns.percent_possible_obs 86.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 4.0 _reflns.number_all 21078 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.538 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 45.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 30.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.050 _refine.ls_number_reflns_obs 10640 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all 0.189 _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.23 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 574 _refine.B_iso_mean 20.734 _refine.aniso_B[1][1] -0.320 _refine.aniso_B[2][2] 0.700 _refine.aniso_B[3][3] -0.380 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.pdbx_overall_ESU_R 0.143 _refine.pdbx_overall_ESU_R_Free 0.138 _refine.overall_SU_ML 0.094 _refine.overall_SU_B 3.227 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2APV _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 10742 _refine.ls_R_factor_obs 0.189 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 833 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 162 _refine_hist.number_atoms_total 1016 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 30.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 869 0.018 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1174 1.507 1.947 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 106 6.347 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38 32.242 23.421 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 130 12.510 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5 18.379 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 126 0.107 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 676 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 382 0.257 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 549 0.298 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 128 0.193 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 33 0.222 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 29 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 548 0.878 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 855 1.407 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 365 2.581 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 319 3.773 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.630 _refine_ls_shell.number_reflns_R_work 771 _refine_ls_shell.R_factor_R_work 0.446 _refine_ls_shell.R_factor_R_free 0.5 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 813 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2APV _struct.title 'Crystal Structure of the G17E/A52V/S54N/Q72H/E80V/L81S/T87S/G96V variant of the murine T cell receptor V beta 8.2 domain' _struct.pdbx_descriptor 'T cell receptor beta chain V' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2APV _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'the murine T cell receptor V beta 8.2 domain, Immune system' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 84 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 88 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 83 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 87 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 25 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 93 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 23 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 92 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.098 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 9 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 7 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 10 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 8 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.07 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 6 ? SER A 9 ? VAL A 4 SER A 7 A 2 VAL A 21 ? GLN A 27 ? VAL A 19 GLN A 25 A 3 GLN A 75 ? LEU A 80 ? GLN A 74 LEU A 79 A 4 LYS A 67 ? SER A 72 ? LYS A 66 SER A 71 B 1 ASN A 12 ? VAL A 16 ? ASN A 10 VAL A 14 B 2 THR A 107 ? LEU A 112 ? THR A 112 LEU A 117 B 3 SER A 89 ? VAL A 97 ? SER A 88 VAL A 96 B 4 ASN A 33 ? GLN A 39 ? ASN A 31 GLN A 37 B 5 LEU A 45 ? SER A 51 ? LEU A 43 SER A 49 B 6 GLU A 58 ? LYS A 59 ? GLU A 56 LYS A 57 C 1 ASN A 12 ? VAL A 16 ? ASN A 10 VAL A 14 C 2 THR A 107 ? LEU A 112 ? THR A 112 LEU A 117 C 3 SER A 89 ? VAL A 97 ? SER A 88 VAL A 96 C 4 THR A 100 ? PHE A 103 ? THR A 99 PHE A 108 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 7 ? N THR A 5 O GLN A 26 ? O GLN A 24 A 2 3 N LEU A 23 ? N LEU A 21 O LEU A 78 ? O LEU A 77 A 3 4 O ILE A 79 ? O ILE A 78 N LYS A 67 ? N LYS A 66 B 1 2 N ALA A 15 ? N ALA A 13 O LEU A 112 ? O LEU A 117 B 2 3 O LEU A 109 ? O LEU A 114 N SER A 89 ? N SER A 88 B 3 4 O VAL A 90 ? O VAL A 89 N GLN A 39 ? N GLN A 37 B 4 5 N ARG A 38 ? N ARG A 36 O ARG A 46 ? O ARG A 44 B 5 6 N TYR A 50 ? N TYR A 48 O GLU A 58 ? O GLU A 56 C 1 2 N ALA A 15 ? N ALA A 13 O LEU A 112 ? O LEU A 117 C 2 3 O LEU A 109 ? O LEU A 114 N SER A 89 ? N SER A 88 C 3 4 N SER A 95 ? N SER A 94 O TYR A 102 ? O TYR A 101 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MLA A 201' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MLA A 202' AC3 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE MLA A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 89 ? SER A 88 . ? 1_555 ? 2 AC1 6 ARG A 108 ? ARG A 113 . ? 1_555 ? 3 AC1 6 LEU A 109 ? LEU A 114 . ? 1_555 ? 4 AC1 6 LEU A 112 ? LEU A 117 . ? 8_576 ? 5 AC1 6 HOH E . ? HOH A 361 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 362 . ? 1_555 ? 7 AC2 5 TYR A 37 ? TYR A 35 . ? 1_555 ? 8 AC2 5 GLY A 98 ? GLY A 97 . ? 6_565 ? 9 AC2 5 GLY A 99 ? GLY A 98 . ? 6_565 ? 10 AC2 5 LEU A 101 ? LEU A 100 . ? 6_565 ? 11 AC2 5 HOH E . ? HOH A 347 . ? 1_555 ? 12 AC3 10 ASN A 30 ? ASN A 28 . ? 6_465 ? 13 AC3 10 HIS A 31 ? HIS A 29 . ? 1_555 ? 14 AC3 10 ARG A 46 ? ARG A 44 . ? 6_565 ? 15 AC3 10 VAL A 97 ? VAL A 96 . ? 1_555 ? 16 AC3 10 THR A 100 ? THR A 99 . ? 1_555 ? 17 AC3 10 HOH E . ? HOH A 228 . ? 6_465 ? 18 AC3 10 HOH E . ? HOH A 279 . ? 6_565 ? 19 AC3 10 HOH E . ? HOH A 282 . ? 1_555 ? 20 AC3 10 HOH E . ? HOH A 338 . ? 6_465 ? 21 AC3 10 HOH E . ? HOH A 338 . ? 1_555 ? # _atom_sites.entry_id 2APV _atom_sites.fract_transf_matrix[1][1] 0.03077 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01339 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00880 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 -1 ? ? ? A . n A 1 2 LEU 2 0 ? ? ? A . n A 1 3 GLU 3 1 ? ? ? A . n A 1 4 ALA 4 2 2 ALA ALA A . n A 1 5 ALA 5 3 3 ALA ALA A . n A 1 6 VAL 6 4 4 VAL VAL A . n A 1 7 THR 7 5 5 THR THR A . n A 1 8 GLN 8 6 6 GLN GLN A . n A 1 9 SER 9 7 7 SER SER A . n A 1 10 PRO 10 8 8 PRO PRO A . n A 1 11 ARG 11 9 9 ARG ARG A . n A 1 12 ASN 12 10 10 ASN ASN A . n A 1 13 LYS 13 11 11 LYS LYS A . n A 1 14 VAL 14 12 12 VAL VAL A . n A 1 15 ALA 15 13 13 ALA ALA A . n A 1 16 VAL 16 14 14 VAL VAL A . n A 1 17 THR 17 15 15 THR THR A . n A 1 18 GLY 18 16 16 GLY GLY A . n A 1 19 GLU 19 17 17 GLU GLU A . n A 1 20 LYS 20 18 18 LYS LYS A . n A 1 21 VAL 21 19 19 VAL VAL A . n A 1 22 THR 22 20 20 THR THR A . n A 1 23 LEU 23 21 21 LEU LEU A . n A 1 24 SER 24 22 22 SER SER A . n A 1 25 CYS 25 23 23 CYS CYS A . n A 1 26 GLN 26 24 24 GLN GLN A . n A 1 27 GLN 27 25 25 GLN GLN A . n A 1 28 THR 28 26 26 THR THR A . n A 1 29 ASN 29 27 27 ASN ASN A . n A 1 30 ASN 30 28 28 ASN ASN A . n A 1 31 HIS 31 29 29 HIS HIS A . n A 1 32 ASN 32 30 30 ASN ASN A . n A 1 33 ASN 33 31 31 ASN ASN A . n A 1 34 MET 34 32 32 MET MET A . n A 1 35 TYR 35 33 33 TYR TYR A . n A 1 36 TRP 36 34 34 TRP TRP A . n A 1 37 TYR 37 35 35 TYR TYR A . n A 1 38 ARG 38 36 36 ARG ARG A . n A 1 39 GLN 39 37 37 GLN GLN A . n A 1 40 ASP 40 38 38 ASP ASP A . n A 1 41 THR 41 39 39 THR THR A . n A 1 42 GLY 42 40 40 GLY GLY A . n A 1 43 HIS 43 41 41 HIS HIS A . n A 1 44 GLY 44 42 42 GLY GLY A . n A 1 45 LEU 45 43 43 LEU LEU A . n A 1 46 ARG 46 44 44 ARG ARG A . n A 1 47 LEU 47 45 45 LEU LEU A . n A 1 48 ILE 48 46 46 ILE ILE A . n A 1 49 HIS 49 47 47 HIS HIS A . n A 1 50 TYR 50 48 48 TYR TYR A . n A 1 51 SER 51 49 49 SER SER A . n A 1 52 TYR 52 50 50 TYR TYR A . n A 1 53 GLY 53 51 51 GLY GLY A . n A 1 54 VAL 54 52 52 VAL VAL A . n A 1 55 GLY 55 53 53 GLY GLY A . n A 1 56 ASN 56 54 54 ASN ASN A . n A 1 57 THR 57 55 55 THR THR A . n A 1 58 GLU 58 56 56 GLU GLU A . n A 1 59 LYS 59 57 57 LYS LYS A . n A 1 60 GLY 60 58 58 GLY GLY A . n A 1 61 ASP 61 59 59 ASP ASP A . n A 1 62 ILE 62 60 60 ILE ILE A . n A 1 63 PRO 63 61 61 PRO PRO A . n A 1 64 ASP 64 62 62 ASP ASP A . n A 1 65 GLY 65 63 63 GLY GLY A . n A 1 66 TYR 66 65 65 TYR TYR A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 SER 69 68 68 SER SER A . n A 1 70 ARG 70 69 69 ARG ARG A . n A 1 71 PRO 71 70 70 PRO PRO A . n A 1 72 SER 72 71 71 SER SER A . n A 1 73 HIS 73 72 72 HIS HIS A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 GLN 75 74 74 GLN GLN A . n A 1 76 PHE 76 75 75 PHE PHE A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 SER 82 81 81 SER SER A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 THR 84 83 83 THR THR A . n A 1 85 PRO 85 84 84 PRO PRO A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 GLN 87 86 86 GLN GLN A . n A 1 88 SER 88 87 87 SER SER A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 VAL 90 89 89 VAL VAL A . n A 1 91 TYR 91 90 90 TYR TYR A . n A 1 92 PHE 92 91 91 PHE PHE A . n A 1 93 CYS 93 92 92 CYS CYS A . n A 1 94 ALA 94 93 93 ALA ALA A . n A 1 95 SER 95 94 94 SER SER A . n A 1 96 GLY 96 95 95 GLY GLY A . n A 1 97 VAL 97 96 96 VAL VAL A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 GLY 99 98 98 GLY GLY A . n A 1 100 THR 100 99 99 THR THR A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 TYR 102 101 101 TYR TYR A . n A 1 103 PHE 103 108 108 PHE PHE A . n A 1 104 GLY 104 109 109 GLY GLY A . n A 1 105 ALA 105 110 110 ALA ALA A . n A 1 106 GLY 106 111 111 GLY GLY A . n A 1 107 THR 107 112 112 THR THR A . n A 1 108 ARG 108 113 113 ARG ARG A . n A 1 109 LEU 109 114 114 LEU LEU A . n A 1 110 SER 110 115 115 SER SER A . n A 1 111 VAL 111 116 116 VAL VAL A . n A 1 112 LEU 112 117 117 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLA 1 201 201 MLA MLA A . C 2 MLA 1 202 202 MLA MLA A . D 2 MLA 1 203 203 MLA MLA A . E 3 HOH 1 204 1 HOH HOH A . E 3 HOH 2 205 2 HOH HOH A . E 3 HOH 3 206 3 HOH HOH A . E 3 HOH 4 207 4 HOH HOH A . E 3 HOH 5 208 5 HOH HOH A . E 3 HOH 6 209 6 HOH HOH A . E 3 HOH 7 210 7 HOH HOH A . E 3 HOH 8 211 8 HOH HOH A . E 3 HOH 9 212 9 HOH HOH A . E 3 HOH 10 213 10 HOH HOH A . E 3 HOH 11 214 11 HOH HOH A . E 3 HOH 12 215 12 HOH HOH A . E 3 HOH 13 216 13 HOH HOH A . E 3 HOH 14 217 14 HOH HOH A . E 3 HOH 15 218 15 HOH HOH A . E 3 HOH 16 219 16 HOH HOH A . E 3 HOH 17 220 17 HOH HOH A . E 3 HOH 18 221 18 HOH HOH A . E 3 HOH 19 222 19 HOH HOH A . E 3 HOH 20 223 20 HOH HOH A . E 3 HOH 21 224 21 HOH HOH A . E 3 HOH 22 225 22 HOH HOH A . E 3 HOH 23 226 23 HOH HOH A . E 3 HOH 24 227 24 HOH HOH A . E 3 HOH 25 228 25 HOH HOH A . E 3 HOH 26 229 26 HOH HOH A . E 3 HOH 27 230 27 HOH HOH A . E 3 HOH 28 231 28 HOH HOH A . E 3 HOH 29 232 29 HOH HOH A . E 3 HOH 30 233 30 HOH HOH A . E 3 HOH 31 234 31 HOH HOH A . E 3 HOH 32 235 32 HOH HOH A . E 3 HOH 33 236 33 HOH HOH A . E 3 HOH 34 237 34 HOH HOH A . E 3 HOH 35 238 35 HOH HOH A . E 3 HOH 36 239 36 HOH HOH A . E 3 HOH 37 240 37 HOH HOH A . E 3 HOH 38 241 38 HOH HOH A . E 3 HOH 39 242 39 HOH HOH A . E 3 HOH 40 243 40 HOH HOH A . E 3 HOH 41 244 41 HOH HOH A . E 3 HOH 42 245 42 HOH HOH A . E 3 HOH 43 246 43 HOH HOH A . E 3 HOH 44 247 44 HOH HOH A . E 3 HOH 45 248 45 HOH HOH A . E 3 HOH 46 249 46 HOH HOH A . E 3 HOH 47 250 47 HOH HOH A . E 3 HOH 48 251 48 HOH HOH A . E 3 HOH 49 252 49 HOH HOH A . E 3 HOH 50 253 50 HOH HOH A . E 3 HOH 51 254 51 HOH HOH A . E 3 HOH 52 255 52 HOH HOH A . E 3 HOH 53 256 53 HOH HOH A . E 3 HOH 54 257 54 HOH HOH A . E 3 HOH 55 258 55 HOH HOH A . E 3 HOH 56 259 56 HOH HOH A . E 3 HOH 57 260 57 HOH HOH A . E 3 HOH 58 261 58 HOH HOH A . E 3 HOH 59 262 59 HOH HOH A . E 3 HOH 60 263 60 HOH HOH A . E 3 HOH 61 264 61 HOH HOH A . E 3 HOH 62 265 62 HOH HOH A . E 3 HOH 63 266 63 HOH HOH A . E 3 HOH 64 267 64 HOH HOH A . E 3 HOH 65 268 65 HOH HOH A . E 3 HOH 66 269 66 HOH HOH A . E 3 HOH 67 270 67 HOH HOH A . E 3 HOH 68 271 68 HOH HOH A . E 3 HOH 69 272 69 HOH HOH A . E 3 HOH 70 273 70 HOH HOH A . E 3 HOH 71 274 71 HOH HOH A . E 3 HOH 72 275 72 HOH HOH A . E 3 HOH 73 276 73 HOH HOH A . E 3 HOH 74 277 74 HOH HOH A . E 3 HOH 75 278 75 HOH HOH A . E 3 HOH 76 279 76 HOH HOH A . E 3 HOH 77 280 77 HOH HOH A . E 3 HOH 78 281 78 HOH HOH A . E 3 HOH 79 282 79 HOH HOH A . E 3 HOH 80 283 80 HOH HOH A . E 3 HOH 81 284 81 HOH HOH A . E 3 HOH 82 285 82 HOH HOH A . E 3 HOH 83 286 83 HOH HOH A . E 3 HOH 84 287 84 HOH HOH A . E 3 HOH 85 288 85 HOH HOH A . E 3 HOH 86 289 86 HOH HOH A . E 3 HOH 87 290 87 HOH HOH A . E 3 HOH 88 291 88 HOH HOH A . E 3 HOH 89 292 89 HOH HOH A . E 3 HOH 90 293 90 HOH HOH A . E 3 HOH 91 294 91 HOH HOH A . E 3 HOH 92 295 92 HOH HOH A . E 3 HOH 93 296 93 HOH HOH A . E 3 HOH 94 297 94 HOH HOH A . E 3 HOH 95 298 95 HOH HOH A . E 3 HOH 96 299 96 HOH HOH A . E 3 HOH 97 300 97 HOH HOH A . E 3 HOH 98 301 98 HOH HOH A . E 3 HOH 99 302 99 HOH HOH A . E 3 HOH 100 303 100 HOH HOH A . E 3 HOH 101 304 101 HOH HOH A . E 3 HOH 102 305 102 HOH HOH A . E 3 HOH 103 306 103 HOH HOH A . E 3 HOH 104 307 104 HOH HOH A . E 3 HOH 105 308 105 HOH HOH A . E 3 HOH 106 309 106 HOH HOH A . E 3 HOH 107 310 107 HOH HOH A . E 3 HOH 108 311 108 HOH HOH A . E 3 HOH 109 312 109 HOH HOH A . E 3 HOH 110 313 110 HOH HOH A . E 3 HOH 111 314 111 HOH HOH A . E 3 HOH 112 315 112 HOH HOH A . E 3 HOH 113 316 113 HOH HOH A . E 3 HOH 114 317 114 HOH HOH A . E 3 HOH 115 318 115 HOH HOH A . E 3 HOH 116 319 116 HOH HOH A . E 3 HOH 117 320 117 HOH HOH A . E 3 HOH 118 321 118 HOH HOH A . E 3 HOH 119 322 119 HOH HOH A . E 3 HOH 120 323 120 HOH HOH A . E 3 HOH 121 324 121 HOH HOH A . E 3 HOH 122 325 122 HOH HOH A . E 3 HOH 123 326 123 HOH HOH A . E 3 HOH 124 327 124 HOH HOH A . E 3 HOH 125 328 125 HOH HOH A . E 3 HOH 126 329 126 HOH HOH A . E 3 HOH 127 330 127 HOH HOH A . E 3 HOH 128 331 128 HOH HOH A . E 3 HOH 129 332 129 HOH HOH A . E 3 HOH 130 333 130 HOH HOH A . E 3 HOH 131 334 131 HOH HOH A . E 3 HOH 132 335 132 HOH HOH A . E 3 HOH 133 336 133 HOH HOH A . E 3 HOH 134 337 134 HOH HOH A . E 3 HOH 135 338 135 HOH HOH A . E 3 HOH 136 339 136 HOH HOH A . E 3 HOH 137 340 137 HOH HOH A . E 3 HOH 138 341 138 HOH HOH A . E 3 HOH 139 342 139 HOH HOH A . E 3 HOH 140 343 140 HOH HOH A . E 3 HOH 141 344 141 HOH HOH A . E 3 HOH 142 345 142 HOH HOH A . E 3 HOH 143 346 143 HOH HOH A . E 3 HOH 144 347 144 HOH HOH A . E 3 HOH 145 348 145 HOH HOH A . E 3 HOH 146 349 146 HOH HOH A . E 3 HOH 147 350 147 HOH HOH A . E 3 HOH 148 351 148 HOH HOH A . E 3 HOH 149 352 149 HOH HOH A . E 3 HOH 150 353 150 HOH HOH A . E 3 HOH 151 354 151 HOH HOH A . E 3 HOH 152 355 152 HOH HOH A . E 3 HOH 153 356 153 HOH HOH A . E 3 HOH 154 357 154 HOH HOH A . E 3 HOH 155 358 155 HOH HOH A . E 3 HOH 156 359 156 HOH HOH A . E 3 HOH 157 360 157 HOH HOH A . E 3 HOH 158 361 158 HOH HOH A . E 3 HOH 159 362 159 HOH HOH A . E 3 HOH 160 363 160 HOH HOH A . E 3 HOH 161 364 161 HOH HOH A . E 3 HOH 162 365 162 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 323 ? E HOH . 2 1 A HOH 338 ? E HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-21 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2015-04-29 5 'Structure model' 1 4 2017-10-11 6 'Structure model' 1 5 2018-04-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' 4 5 'Structure model' 'Refinement description' 5 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 6 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.type' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 3 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CrystalClear '(MSC/RIGAKU)' ? ? ? ? 'data reduction' ? ? ? 5 d*TREK . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? 7 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE NO SUITABLE SEQUENCE DATABASE REFERENCE WAS AVAILABLE AT THE TIME OF PROCESSING THIS FILE. ; # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A GLY 63 ? ? N A TYR 65 ? ? 1.537 1.336 0.201 0.023 Y 2 1 C A TYR 101 ? ? N A PHE 108 ? ? 1.489 1.336 0.153 0.023 Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 O _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 63 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 63 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 TYR _pdbx_validate_rmsd_angle.auth_seq_id_3 65 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 107.45 _pdbx_validate_rmsd_angle.angle_target_value 122.70 _pdbx_validate_rmsd_angle.angle_deviation -15.25 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 15 ? ? -39.36 128.21 2 1 ARG A 69 ? ? -113.99 78.60 3 1 SER A 88 ? ? -174.51 -172.22 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE -1 ? A ILE 1 2 1 Y 1 A LEU 0 ? A LEU 2 3 1 Y 1 A GLU 1 ? A GLU 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MALONIC ACID' MLA 3 water HOH #