data_2AQC # _entry.id 2AQC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2AQC pdb_00002aqc 10.2210/pdb2aqc/pdb RCSB RCSB034188 ? ? WWPDB D_1000034188 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2AQC _pdbx_database_status.recvd_initial_deposition_date 2005-08-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hamma, T.' 1 'Reichow, S.L.' 2 'Varani, G.' 3 ;Ferre-D'Amare, A.R. ; 4 # _citation.id primary _citation.title 'The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 12 _citation.page_first 1101 _citation.page_last 1107 _citation.year 2005 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16286935 _citation.pdbx_database_id_DOI 10.1038/nsmb1036 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hamma, T.' 1 ? primary 'Reichow, S.L.' 2 ? primary 'Varani, G.' 3 ? primary ;Ferre-D'Amare, A.R. ; 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribosome biogenesis protein Nop10' 7430.080 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSHMVEMRMKKCPKCGLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALKNKNKAE _entity_poly.pdbx_seq_one_letter_code_can GSHMVEMRMKKCPKCGLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALKNKNKAE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 VAL n 1 6 GLU n 1 7 MET n 1 8 ARG n 1 9 MET n 1 10 LYS n 1 11 LYS n 1 12 CYS n 1 13 PRO n 1 14 LYS n 1 15 CYS n 1 16 GLY n 1 17 LEU n 1 18 TYR n 1 19 THR n 1 20 LEU n 1 21 LYS n 1 22 GLU n 1 23 ILE n 1 24 CYS n 1 25 PRO n 1 26 LYS n 1 27 CYS n 1 28 GLY n 1 29 GLU n 1 30 LYS n 1 31 THR n 1 32 VAL n 1 33 ILE n 1 34 PRO n 1 35 LYS n 1 36 PRO n 1 37 PRO n 1 38 LYS n 1 39 PHE n 1 40 SER n 1 41 LEU n 1 42 GLU n 1 43 ASP n 1 44 ARG n 1 45 TRP n 1 46 GLY n 1 47 LYS n 1 48 TYR n 1 49 ARG n 1 50 ARG n 1 51 MET n 1 52 LEU n 1 53 LYS n 1 54 ARG n 1 55 ALA n 1 56 LEU n 1 57 LYS n 1 58 ASN n 1 59 LYS n 1 60 ASN n 1 61 LYS n 1 62 ALA n 1 63 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Methanocaldococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta pLys S' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET 16b' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NOP10_METJA _struct_ref.pdbx_db_accession P81303 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MVEMRMKKCPKCGLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALKNKNKAE _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2AQC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 63 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P81303 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 60 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 60 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2AQC GLY A 1 ? UNP P81303 ? ? 'cloning artifact' -2 1 1 2AQC SER A 2 ? UNP P81303 ? ? 'cloning artifact' -1 2 1 2AQC HIS A 3 ? UNP P81303 ? ? 'cloning artifact' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D NOESY' 2 3 1 3D_15N-separated_NOESY 3 4 1 3D_13C-separated_NOESY 4 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '50; 100' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1mM aNop10 unlabelled; Sodium Acetate, KCl, 2mM DTT, 100uM excess ZnCl2' '90% H2O/10% D2O' 2 '1mM aNop10 unlabelled; Sodium Acetate, KCl, 2mM DTT, 100uM excess ZnCl2' '100% D2O' 3 '1mM aNop10 15N-labelled; Sodium Acetate, KCl, 2mM DTT, 100uM excess ZnCl2' '90% H2O/10% D2O' 4 '1mM aNop10 15N,13C-labelled; Sodium Acetate, KCl, 2mM DTT, 100uM excess ZnCl2' '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DMX Bruker 750 ? 3 INOVA Varian 800 ? # _pdbx_nmr_refine.entry_id 2AQC _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ;the structures are based on a total of 1172 restraints, 1048 are NOE-derived distance constraints, 40 dihedral angle restraints,56 distance restraints from hydrogen bonds, 28 distance restraints for Zn site geometry ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2AQC _pdbx_nmr_details.text 'Dihedral restraints derived from TALOS predictions. H-bond restraints derived from D20 protection analysis' # _pdbx_nmr_ensemble.entry_id 2AQC _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2AQC _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CYANA 'v. 2.0' 'Guntert, P.' 1 processing NMRPipe 'v. 2.3' 'Delaglio, F.' 2 'data analysis' Sparky 'v. 3.110' 'Goddard. T.D.' 3 'data analysis' TALOS 'v. 2003.027.13.05' 'Cornilescu, G.' 4 # _exptl.entry_id 2AQC _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 2AQC _struct.title 'NMR Structural analysis of archaeal Nop10' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AQC _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text 'aNop10, Zinc-Ribbon, RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLY _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 46 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 52 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLY _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 43 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 49 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 12 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 9 A ZN 100 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc2 metalc ? ? A CYS 15 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 12 A ZN 100 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc3 metalc ? ? A CYS 24 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 21 A ZN 100 1_555 ? ? ? ? ? ? ? 2.671 ? ? metalc4 metalc ? ? A CYS 27 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 24 A ZN 100 1_555 ? ? ? ? ? ? ? 2.332 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 10 ? LYS A 11 ? LYS A 7 LYS A 8 A 2 TYR A 18 ? THR A 19 ? TYR A 15 THR A 16 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 10 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 7 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id THR _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 19 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id THR _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 16 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 100 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 12 ? CYS A 9 . ? 1_555 ? 2 AC1 4 CYS A 15 ? CYS A 12 . ? 1_555 ? 3 AC1 4 CYS A 24 ? CYS A 21 . ? 1_555 ? 4 AC1 4 CYS A 27 ? CYS A 24 . ? 1_555 ? # _database_PDB_matrix.entry_id 2AQC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2AQC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 -3 GLY GLY A . n A 1 2 SER 2 -1 -2 SER SER A . n A 1 3 HIS 3 0 -1 HIS HIS A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 VAL 5 2 2 VAL VAL A . n A 1 6 GLU 6 3 3 GLU GLU A . n A 1 7 MET 7 4 4 MET MET A . n A 1 8 ARG 8 5 5 ARG ARG A . n A 1 9 MET 9 6 6 MET MET A . n A 1 10 LYS 10 7 7 LYS LYS A . n A 1 11 LYS 11 8 8 LYS LYS A . n A 1 12 CYS 12 9 9 CYS CYS A . n A 1 13 PRO 13 10 10 PRO PRO A . n A 1 14 LYS 14 11 11 LYS LYS A . n A 1 15 CYS 15 12 12 CYS CYS A . n A 1 16 GLY 16 13 13 GLY GLY A . n A 1 17 LEU 17 14 14 LEU LEU A . n A 1 18 TYR 18 15 15 TYR TYR A . n A 1 19 THR 19 16 16 THR THR A . n A 1 20 LEU 20 17 17 LEU LEU A . n A 1 21 LYS 21 18 18 LYS LYS A . n A 1 22 GLU 22 19 19 GLU GLU A . n A 1 23 ILE 23 20 20 ILE ILE A . n A 1 24 CYS 24 21 21 CYS CYS A . n A 1 25 PRO 25 22 22 PRO PRO A . n A 1 26 LYS 26 23 23 LYS LYS A . n A 1 27 CYS 27 24 24 CYS CYS A . n A 1 28 GLY 28 25 25 GLY GLY A . n A 1 29 GLU 29 26 26 GLU GLU A . n A 1 30 LYS 30 27 27 LYS LYS A . n A 1 31 THR 31 28 28 THR THR A . n A 1 32 VAL 32 29 29 VAL VAL A . n A 1 33 ILE 33 30 30 ILE ILE A . n A 1 34 PRO 34 31 31 PRO PRO A . n A 1 35 LYS 35 32 32 LYS LYS A . n A 1 36 PRO 36 33 33 PRO PRO A . n A 1 37 PRO 37 34 34 PRO PRO A . n A 1 38 LYS 38 35 35 LYS LYS A . n A 1 39 PHE 39 36 36 PHE PHE A . n A 1 40 SER 40 37 37 SER SER A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 GLU 42 39 39 GLU GLU A . n A 1 43 ASP 43 40 40 ASP ASP A . n A 1 44 ARG 44 41 41 ARG ARG A . n A 1 45 TRP 45 42 42 TRP TRP A . n A 1 46 GLY 46 43 43 GLY GLY A . n A 1 47 LYS 47 44 44 LYS LYS A . n A 1 48 TYR 48 45 45 TYR TYR A . n A 1 49 ARG 49 46 46 ARG ARG A . n A 1 50 ARG 50 47 47 ARG ARG A . n A 1 51 MET 51 48 48 MET MET A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 LYS 53 50 50 LYS LYS A . n A 1 54 ARG 54 51 51 ARG ARG A . n A 1 55 ALA 55 52 52 ALA ALA A . n A 1 56 LEU 56 53 53 LEU LEU A . n A 1 57 LYS 57 54 54 LYS LYS A . n A 1 58 ASN 58 55 55 ASN ASN A . n A 1 59 LYS 59 56 56 LYS LYS A . n A 1 60 ASN 60 57 57 ASN ASN A . n A 1 61 LYS 61 58 58 LYS LYS A . n A 1 62 ALA 62 59 59 ALA ALA A . n A 1 63 GLU 63 60 60 GLU GLU A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 100 _pdbx_nonpoly_scheme.auth_seq_num -13 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZIN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 12 ? A CYS 9 ? 1_555 ZN ? B ZN . ? A ZN 100 ? 1_555 SG ? A CYS 15 ? A CYS 12 ? 1_555 119.9 ? 2 SG ? A CYS 12 ? A CYS 9 ? 1_555 ZN ? B ZN . ? A ZN 100 ? 1_555 SG ? A CYS 24 ? A CYS 21 ? 1_555 95.4 ? 3 SG ? A CYS 15 ? A CYS 12 ? 1_555 ZN ? B ZN . ? A ZN 100 ? 1_555 SG ? A CYS 24 ? A CYS 21 ? 1_555 110.1 ? 4 SG ? A CYS 12 ? A CYS 9 ? 1_555 ZN ? B ZN . ? A ZN 100 ? 1_555 SG ? A CYS 27 ? A CYS 24 ? 1_555 121.6 ? 5 SG ? A CYS 15 ? A CYS 12 ? 1_555 ZN ? B ZN . ? A ZN 100 ? 1_555 SG ? A CYS 27 ? A CYS 24 ? 1_555 108.8 ? 6 SG ? A CYS 24 ? A CYS 21 ? 1_555 ZN ? B ZN . ? A ZN 100 ? 1_555 SG ? A CYS 27 ? A CYS 24 ? 1_555 96.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.value' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 4 'Structure model' '_struct_ref_seq_dif.details' 22 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 23 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 24 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 5 ? ? -62.16 -176.68 2 1 LYS A 32 ? ? -113.92 75.64 3 2 PRO A 31 ? ? -69.78 -171.66 4 2 LYS A 32 ? ? -114.87 76.07 5 2 PHE A 36 ? ? -54.39 103.99 6 3 MET A 6 ? ? -174.10 -176.18 7 3 PRO A 31 ? ? -69.73 -171.76 8 3 LYS A 32 ? ? -113.81 75.89 9 4 LYS A 32 ? ? -113.10 75.62 10 4 PRO A 34 ? ? -69.78 -172.33 11 4 LYS A 56 ? ? -57.98 174.58 12 5 MET A 6 ? ? -174.14 -169.02 13 5 LYS A 32 ? ? -115.92 75.88 14 6 ARG A 5 ? ? -174.53 145.66 15 6 MET A 6 ? ? -174.36 -169.36 16 6 THR A 16 ? ? -175.37 -179.96 17 6 PRO A 34 ? ? -69.74 -175.11 18 6 ARG A 41 ? ? -51.98 -71.96 19 6 LYS A 50 ? ? -54.60 172.73 20 7 MET A 6 ? ? -174.30 -177.03 21 7 LYS A 32 ? ? -112.93 75.49 22 7 LYS A 35 ? ? 51.88 88.97 23 7 ARG A 41 ? ? -61.27 -70.35 24 7 ASN A 57 ? ? -56.47 103.66 25 9 HIS A 0 ? ? -91.22 -63.62 26 9 PRO A 31 ? ? -69.79 81.91 27 9 PRO A 34 ? ? -69.79 -170.63 28 9 ASP A 40 ? ? -52.13 170.16 29 10 THR A 16 ? ? -176.05 -178.93 30 10 PRO A 31 ? ? -69.79 98.71 31 10 LEU A 49 ? ? -64.06 -74.86 32 11 MET A 6 ? ? -174.33 -178.99 33 11 PRO A 34 ? ? -69.84 -174.41 34 11 ASP A 40 ? ? -52.06 103.45 35 11 ALA A 52 ? ? -167.21 89.33 36 12 MET A 6 ? ? -174.51 -172.07 37 12 PRO A 34 ? ? -69.83 -172.77 38 13 PHE A 36 ? ? -160.48 105.24 39 13 ASP A 40 ? ? -59.47 97.57 40 14 THR A 16 ? ? -175.92 -179.30 41 14 PHE A 36 ? ? -55.62 -73.00 42 15 MET A 6 ? ? -174.18 -169.50 43 16 MET A 6 ? ? -174.56 -169.30 44 16 THR A 16 ? ? -175.27 -179.56 45 16 ARG A 41 ? ? -62.66 -74.27 46 17 MET A 4 ? ? -57.45 177.81 47 17 MET A 6 ? ? -174.40 -170.93 48 17 THR A 16 ? ? -174.48 -179.37 49 17 PRO A 34 ? ? -69.78 -179.08 50 17 PHE A 36 ? ? -58.19 101.45 51 18 THR A 16 ? ? -176.02 -179.77 52 18 PHE A 36 ? ? -52.59 102.84 53 18 ARG A 51 ? ? -63.79 -73.48 54 19 PRO A 31 ? ? -69.85 84.92 55 19 PRO A 34 ? ? -69.75 -179.32 56 19 LEU A 49 ? ? -51.79 -74.95 57 20 PRO A 34 ? ? -69.69 -170.97 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #