HEADER HYDROLASE 23-AUG-05 2AS8 TITLE CRYSTAL STRUCTURE OF MATURE AND FULLY ACTIVE DER P 1 ALLERGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR MITE FECAL ALLERGEN DER P 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DER P I; COMPND 5 EC: 3.4.22.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DERMATOPHAGOIDES PTERONYSSINUS; SOURCE 3 ORGANISM_COMMON: EUROPEAN HOUSE DUST MITE; SOURCE 4 ORGANISM_TAXID: 6956; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PCR4-BLUNT; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZ C KEYWDS CYSTEINE PROTEINASE FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DE HALLEUX,E.STURA,L.VANDERELST,V.CARLIER,M.JACQUEMIN,J.-M.SAINT- AUTHOR 2 REMY REVDAT 6 25-OCT-23 2AS8 1 REMARK REVDAT 5 10-NOV-21 2AS8 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 2AS8 1 REMARK REVDAT 3 24-FEB-09 2AS8 1 VERSN REVDAT 2 28-MAR-06 2AS8 1 AUTHOR JRNL REVDAT 1 06-DEC-05 2AS8 0 JRNL AUTH S.DE HALLEUX,E.STURA,L.VANDERELST,V.CARLIER,M.JACQUEMIN, JRNL AUTH 2 J.-M.SAINT-REMY JRNL TITL THREE-DIMENSIONAL STRUCTURE AND IGE-BINDING PROPERTIES OF JRNL TITL 2 MATURE FULLY ACTIVE DER P 1, A CLINICALLY RELEVANT MAJOR JRNL TITL 3 ALLERGEN JRNL REF J.ALLERGY CLIN.IMMUNOL. V. 117 571 2006 JRNL REFN ISSN 0091-6749 JRNL PMID 16522455 JRNL DOI 10.1016/J.JACI.2005.11.032 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 34344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1832 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2439 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 791 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.31000 REMARK 3 B22 (A**2) : 3.73000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.068 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3610 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3086 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4916 ; 1.999 ; 1.917 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7140 ; 1.192 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 6.283 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;35.200 ;23.838 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 544 ;16.975 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.990 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.491 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4172 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 786 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 869 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3517 ; 0.228 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1787 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2000 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 621 ; 0.214 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.519 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 81 ; 0.424 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 65 ; 0.384 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2811 ; 1.519 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 912 ; 0.169 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3528 ; 1.399 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1687 ; 2.982 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1388 ; 3.927 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AS8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.006768 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : CHANNEL-CUT SILICON REMARK 200 MONOCHROMATOR, TOROIDALLY BENT REMARK 200 CYLINDRICAL GRAZING INCIDENCE REMARK 200 MIRROR. TWO MONOCHROMATOR REMARK 200 CRYSTALS SI(311) CUT AND A LOWER REMARK 200 RESOLUTION SI(111) CUT. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42045 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 34.00 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57400 REMARK 200 R SYM FOR SHELL (I) : 0.42900 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ID 7PCK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM SODIUM ACETATE, PH 4.5, LOW SALT, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.56000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.21500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.56000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.21500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2282 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 105 O HOH A 1262 1.82 REMARK 500 SG CYS B 34 O HOH B 2339 1.83 REMARK 500 O HOH A 1227 O HOH A 1383 1.95 REMARK 500 O GLY B 39 O HOH B 2385 2.03 REMARK 500 ND1 HIS A 170 O HOH A 1136 2.05 REMARK 500 SG CYS A 34 O HOH A 1055 2.05 REMARK 500 O HOH B 2289 O HOH B 2314 2.07 REMARK 500 NH1 ARG A 105 O HOH A 1167 2.15 REMARK 500 O HOH A 1386 O HOH B 2256 2.16 REMARK 500 O ALA B 42 O HOH B 2358 2.16 REMARK 500 O HOH A 1235 O HOH B 2369 2.16 REMARK 500 O HOH B 2154 O HOH B 2323 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 161 O HOH A 1306 4456 0.60 REMARK 500 CZ ARG A 161 O HOH A 1306 4456 1.45 REMARK 500 O HOH A 1167 O HOH B 2388 4555 1.68 REMARK 500 O HOH A 1380 O HOH B 2202 4556 1.85 REMARK 500 NE ARG A 161 O HOH A 1306 4456 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 51 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 78 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 95 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 110 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 110 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 69 63.62 -152.71 REMARK 500 TYR A 94 73.42 -162.96 REMARK 500 ASN A 123 108.51 -162.30 REMARK 500 TYR A 165 -61.82 -93.63 REMARK 500 SER A 178 -157.68 -167.09 REMARK 500 ASP A 193 174.37 73.44 REMARK 500 HIS B 69 58.95 -155.03 REMARK 500 TYR B 94 75.17 -165.49 REMARK 500 ASN B 123 111.43 -164.13 REMARK 500 TYR B 165 -65.34 -95.60 REMARK 500 SER B 178 -152.63 -159.38 REMARK 500 ASP B 193 -177.03 72.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 78 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD2 REMARK 620 2 LEU A 57 O 101.1 REMARK 620 3 GLU A 59 OE2 171.7 84.2 REMARK 620 4 GLU A 91 OE2 98.2 87.3 88.3 REMARK 620 5 HOH A1027 O 88.7 94.7 84.5 172.3 REMARK 620 6 HOH A1264 O 85.6 171.4 89.8 86.4 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 56 OD2 REMARK 620 2 LEU B 57 O 98.0 REMARK 620 3 GLU B 59 OE2 174.9 84.3 REMARK 620 4 GLU B 91 OE2 98.7 83.0 86.0 REMARK 620 5 HOH B2041 O 86.4 91.9 89.0 173.2 REMARK 620 6 HOH B2081 O 90.5 167.6 88.0 86.7 97.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2001 DBREF 2AS8 A 1 222 UNP P08176 DERP1_DERPT 99 320 DBREF 2AS8 B 1 222 UNP P08176 DERP1_DERPT 99 320 SEQADV 2AS8 GLN A 52 UNP P08176 ASN 150 ENGINEERED MUTATION SEQADV 2AS8 ALA A 124 UNP P08176 VAL 222 SEE REMARK 999 SEQADV 2AS8 GLN B 52 UNP P08176 ASN 150 ENGINEERED MUTATION SEQADV 2AS8 ALA B 124 UNP P08176 VAL 222 SEE REMARK 999 SEQRES 1 A 222 THR ASN ALA CYS SER ILE ASN GLY ASN ALA PRO ALA GLU SEQRES 2 A 222 ILE ASP LEU ARG GLN MET ARG THR VAL THR PRO ILE ARG SEQRES 3 A 222 MET GLN GLY GLY CYS GLY SER CYS TRP ALA PHE SER GLY SEQRES 4 A 222 VAL ALA ALA THR GLU SER ALA TYR LEU ALA TYR ARG GLN SEQRES 5 A 222 GLN SER LEU ASP LEU ALA GLU GLN GLU LEU VAL ASP CYS SEQRES 6 A 222 ALA SER GLN HIS GLY CYS HIS GLY ASP THR ILE PRO ARG SEQRES 7 A 222 GLY ILE GLU TYR ILE GLN HIS ASN GLY VAL VAL GLN GLU SEQRES 8 A 222 SER TYR TYR ARG TYR VAL ALA ARG GLU GLN SER CYS ARG SEQRES 9 A 222 ARG PRO ASN ALA GLN ARG PHE GLY ILE SER ASN TYR CYS SEQRES 10 A 222 GLN ILE TYR PRO PRO ASN ALA ASN LYS ILE ARG GLU ALA SEQRES 11 A 222 LEU ALA GLN THR HIS SER ALA ILE ALA VAL ILE ILE GLY SEQRES 12 A 222 ILE LYS ASP LEU ASP ALA PHE ARG HIS TYR ASP GLY ARG SEQRES 13 A 222 THR ILE ILE GLN ARG ASP ASN GLY TYR GLN PRO ASN TYR SEQRES 14 A 222 HIS ALA VAL ASN ILE VAL GLY TYR SER ASN ALA GLN GLY SEQRES 15 A 222 VAL ASP TYR TRP ILE VAL ARG ASN SER TRP ASP THR ASN SEQRES 16 A 222 TRP GLY ASP ASN GLY TYR GLY TYR PHE ALA ALA ASN ILE SEQRES 17 A 222 ASP LEU MET MET ILE GLU GLU TYR PRO TYR VAL VAL ILE SEQRES 18 A 222 LEU SEQRES 1 B 222 THR ASN ALA CYS SER ILE ASN GLY ASN ALA PRO ALA GLU SEQRES 2 B 222 ILE ASP LEU ARG GLN MET ARG THR VAL THR PRO ILE ARG SEQRES 3 B 222 MET GLN GLY GLY CYS GLY SER CYS TRP ALA PHE SER GLY SEQRES 4 B 222 VAL ALA ALA THR GLU SER ALA TYR LEU ALA TYR ARG GLN SEQRES 5 B 222 GLN SER LEU ASP LEU ALA GLU GLN GLU LEU VAL ASP CYS SEQRES 6 B 222 ALA SER GLN HIS GLY CYS HIS GLY ASP THR ILE PRO ARG SEQRES 7 B 222 GLY ILE GLU TYR ILE GLN HIS ASN GLY VAL VAL GLN GLU SEQRES 8 B 222 SER TYR TYR ARG TYR VAL ALA ARG GLU GLN SER CYS ARG SEQRES 9 B 222 ARG PRO ASN ALA GLN ARG PHE GLY ILE SER ASN TYR CYS SEQRES 10 B 222 GLN ILE TYR PRO PRO ASN ALA ASN LYS ILE ARG GLU ALA SEQRES 11 B 222 LEU ALA GLN THR HIS SER ALA ILE ALA VAL ILE ILE GLY SEQRES 12 B 222 ILE LYS ASP LEU ASP ALA PHE ARG HIS TYR ASP GLY ARG SEQRES 13 B 222 THR ILE ILE GLN ARG ASP ASN GLY TYR GLN PRO ASN TYR SEQRES 14 B 222 HIS ALA VAL ASN ILE VAL GLY TYR SER ASN ALA GLN GLY SEQRES 15 B 222 VAL ASP TYR TRP ILE VAL ARG ASN SER TRP ASP THR ASN SEQRES 16 B 222 TRP GLY ASP ASN GLY TYR GLY TYR PHE ALA ALA ASN ILE SEQRES 17 B 222 ASP LEU MET MET ILE GLU GLU TYR PRO TYR VAL VAL ILE SEQRES 18 B 222 LEU HET MG A1001 1 HET MG B2001 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *791(H2 O) HELIX 1 1 LEU A 16 ARG A 20 1 5 HELIX 2 2 SER A 33 GLN A 52 1 20 HELIX 3 3 ALA A 58 ALA A 66 1 9 HELIX 4 4 THR A 75 GLY A 87 1 13 HELIX 5 5 GLN A 90 TYR A 94 5 5 HELIX 6 6 ASN A 123 HIS A 135 1 13 HELIX 7 7 ASP A 146 TYR A 153 1 8 HELIX 8 8 ASP A 209 ILE A 213 5 5 HELIX 9 9 LEU B 16 ARG B 20 1 5 HELIX 10 10 SER B 33 GLN B 52 1 20 HELIX 11 11 ALA B 58 ALA B 66 1 9 HELIX 12 12 HIS B 69 GLY B 73 5 5 HELIX 13 13 THR B 75 GLY B 87 1 13 HELIX 14 14 GLN B 90 TYR B 94 5 5 HELIX 15 15 ASN B 123 HIS B 135 1 13 HELIX 16 16 ASP B 146 HIS B 152 1 7 HELIX 17 17 ASP B 209 ILE B 213 5 5 SHEET 1 A 3 ILE A 14 ASP A 15 0 SHEET 2 A 3 ASN A 168 ALA A 180 -1 O TYR A 177 N ILE A 14 SHEET 3 A 3 ILE A 138 ILE A 144 -1 N ILE A 142 O HIS A 170 SHEET 1 B 4 ILE A 14 ASP A 15 0 SHEET 2 B 4 ASN A 168 ALA A 180 -1 O TYR A 177 N ILE A 14 SHEET 3 B 4 VAL A 183 ARG A 189 -1 O ILE A 187 N VAL A 175 SHEET 4 B 4 TYR A 201 ALA A 205 -1 O PHE A 204 N TRP A 186 SHEET 1 C 2 ASN A 115 GLN A 118 0 SHEET 2 C 2 TYR A 218 ILE A 221 -1 O VAL A 219 N CYS A 117 SHEET 1 D 3 ILE B 14 ASP B 15 0 SHEET 2 D 3 ASN B 168 ALA B 180 -1 O TYR B 177 N ILE B 14 SHEET 3 D 3 ILE B 138 ILE B 144 -1 N ILE B 142 O HIS B 170 SHEET 1 E 4 ILE B 14 ASP B 15 0 SHEET 2 E 4 ASN B 168 ALA B 180 -1 O TYR B 177 N ILE B 14 SHEET 3 E 4 VAL B 183 ARG B 189 -1 O ARG B 189 N ASN B 173 SHEET 4 E 4 TYR B 201 ALA B 205 -1 O PHE B 204 N TRP B 186 SHEET 1 F 2 ASN B 115 GLN B 118 0 SHEET 2 F 2 TYR B 218 ILE B 221 -1 O VAL B 219 N CYS B 117 SSBOND 1 CYS A 4 CYS A 117 1555 1555 2.02 SSBOND 2 CYS A 31 CYS A 71 1555 1555 1.89 SSBOND 3 CYS A 65 CYS A 103 1555 1555 2.06 SSBOND 4 CYS B 4 CYS B 117 1555 1555 2.03 SSBOND 5 CYS B 31 CYS B 71 1555 1555 2.05 SSBOND 6 CYS B 65 CYS B 103 1555 1555 2.07 LINK OD2 ASP A 56 MG MG A1001 1555 1555 2.31 LINK O LEU A 57 MG MG A1001 1555 1555 2.32 LINK OE2 GLU A 59 MG MG A1001 1555 1555 2.45 LINK OE2 GLU A 91 MG MG A1001 1555 1555 2.49 LINK MG MG A1001 O HOH A1027 1555 1555 2.38 LINK MG MG A1001 O HOH A1264 1555 1555 2.40 LINK OD2 ASP B 56 MG MG B2001 1555 1555 2.26 LINK O LEU B 57 MG MG B2001 1555 1555 2.36 LINK OE2 GLU B 59 MG MG B2001 1555 1555 2.46 LINK OE2 GLU B 91 MG MG B2001 1555 1555 2.32 LINK MG MG B2001 O HOH B2041 1555 1555 2.46 LINK MG MG B2001 O HOH B2081 1555 1555 2.35 CISPEP 1 TYR A 120 PRO A 121 0 -0.22 CISPEP 2 TYR B 120 PRO B 121 0 -2.20 SITE 1 AC1 6 ASP A 56 LEU A 57 GLU A 59 GLU A 91 SITE 2 AC1 6 HOH A1027 HOH A1264 SITE 1 AC2 6 ASP B 56 LEU B 57 GLU B 59 GLU B 91 SITE 2 AC2 6 HOH B2041 HOH B2081 CRYST1 75.120 78.430 83.774 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013312 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011937 0.00000