data_2AVH # _entry.id 2AVH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2AVH pdb_00002avh 10.2210/pdb2avh/pdb NDB UD0062 ? ? RCSB RCSB034361 ? ? WWPDB D_1000034361 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-28 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2024-02-14 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' pdbx_struct_special_symmetry 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site 9 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 19 5 'Structure model' '_pdbx_struct_conn_angle.value' 20 5 'Structure model' '_struct_conn.pdbx_dist_value' 21 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 5 'Structure model' '_struct_conn.ptnr1_symmetry' 28 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_symmetry' 35 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2AVH _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-08-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2AVJ _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hazel, P.' 1 'Parkinson, G.N.' 2 'Neidle, S.' 3 # _citation.id primary _citation.title 'Topology variation and loop structural homology in crystal and simulated structures of a bimolecular DNA quadruplex.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 128 _citation.page_first 5480 _citation.page_last 5487 _citation.year 2006 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16620121 _citation.pdbx_database_id_DOI 10.1021/ja058577+ # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hazel, P.' 1 ? primary 'Parkinson, G.N.' 2 ? primary 'Neidle, S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*GP*GP*TP*TP*TP*GP*GP*GP*G)-3'" 3501.267 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 3 water nat water 18.015 54 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DG)(DG)(DT)(DT)(DT)(DG)(DG)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGGGTTTGGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DG 11 11 11 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 12 12 K K A . C 2 K 1 13 13 K K A . D 2 K 1 14 14 K K A . E 2 K 1 15 15 K K A . F 3 HOH 1 16 16 HOH HOH A . F 3 HOH 2 17 17 HOH HOH A . F 3 HOH 3 18 18 HOH HOH A . F 3 HOH 4 19 19 HOH HOH A . F 3 HOH 5 20 20 HOH HOH A . F 3 HOH 6 21 21 HOH HOH A . F 3 HOH 7 22 22 HOH HOH A . F 3 HOH 8 23 23 HOH HOH A . F 3 HOH 9 24 24 HOH HOH A . F 3 HOH 10 25 25 HOH HOH A . F 3 HOH 11 26 26 HOH HOH A . F 3 HOH 12 27 27 HOH HOH A . F 3 HOH 13 28 28 HOH HOH A . F 3 HOH 14 29 29 HOH HOH A . F 3 HOH 15 30 30 HOH HOH A . F 3 HOH 16 31 31 HOH HOH A . F 3 HOH 17 32 32 HOH HOH A . F 3 HOH 18 33 33 HOH HOH A . F 3 HOH 19 34 34 HOH HOH A . F 3 HOH 20 35 35 HOH HOH A . F 3 HOH 21 36 36 HOH HOH A . F 3 HOH 22 37 37 HOH HOH A . F 3 HOH 23 38 38 HOH HOH A . F 3 HOH 24 39 39 HOH HOH A . F 3 HOH 25 40 40 HOH HOH A . F 3 HOH 26 41 41 HOH HOH A . F 3 HOH 27 42 42 HOH HOH A . F 3 HOH 28 43 43 HOH HOH A . F 3 HOH 29 44 44 HOH HOH A . F 3 HOH 30 45 45 HOH HOH A . F 3 HOH 31 46 46 HOH HOH A . F 3 HOH 32 47 47 HOH HOH A . F 3 HOH 33 48 48 HOH HOH A . F 3 HOH 34 49 49 HOH HOH A . F 3 HOH 35 50 50 HOH HOH A . F 3 HOH 36 51 51 HOH HOH A . F 3 HOH 37 52 52 HOH HOH A . F 3 HOH 38 53 53 HOH HOH A . F 3 HOH 39 54 54 HOH HOH A . F 3 HOH 40 55 55 HOH HOH A . F 3 HOH 41 56 56 HOH HOH A . F 3 HOH 42 57 57 HOH HOH A . F 3 HOH 43 58 58 HOH HOH A . F 3 HOH 44 59 59 HOH HOH A . F 3 HOH 45 60 60 HOH HOH A . F 3 HOH 46 61 61 HOH HOH A . F 3 HOH 47 62 62 HOH HOH A . F 3 HOH 48 63 63 HOH HOH A . F 3 HOH 49 64 64 HOH HOH A . F 3 HOH 50 65 65 HOH HOH A . F 3 HOH 51 66 66 HOH HOH A . F 3 HOH 52 67 67 HOH HOH A . F 3 HOH 53 68 68 HOH HOH A . F 3 HOH 54 69 69 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 EPMR 2.5 'Sep 13 2000' program 'Charles R' crk@agouron.com phasing http://www.msg.ucsf.edu/local/programs/epmr/epmr.html ? ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 4 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 # _cell.length_a 29.932 _cell.length_b 37.112 _cell.length_c 43.653 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 2AVH _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.entry_id 2AVH _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 21 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 2AVH _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.83 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 32.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 284.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'sodium iodide, sodium cacodylate, PEG 400, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 284.15K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'sodium iodide' ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'PEG 400' ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'sodium iodide' ? ? ? 1 6 2 'sodium cacodylate' ? ? ? 1 7 2 'PEG 400' ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-11-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 # _reflns.entry_id 2AVH _reflns.d_resolution_low 25.00 _reflns.d_resolution_high 1.50 _reflns.number_obs 4066 _reflns.percent_possible_obs 99.000 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_chi_squared 1.121 _reflns.pdbx_redundancy ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 4066 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_low 1.540 _reflns_shell.d_res_high 1.50 _reflns_shell.number_measured_obs 390 _reflns_shell.percent_possible_obs 98.700 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_chi_squared 0.365 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.percent_possible_all 96.127 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 23.3 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.910 _refine.ls_number_reflns_obs 4065 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all 0.199 _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.208 _refine.ls_percent_reflns_R_free 4.500 _refine.ls_number_reflns_R_free 184 _refine.B_iso_mean 19.437 _refine.aniso_B[1][1] -0.660 _refine.aniso_B[2][2] 0.490 _refine.aniso_B[3][3] 0.160 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.pdbx_overall_ESU_R 0.099 _refine.pdbx_overall_ESU_R_Free 0.087 _refine.overall_SU_ML 0.063 _refine.overall_SU_B 1.752 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2AVH _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 4065 _refine.ls_R_factor_obs 0.199 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'GGGG(+U)TTGGGG chain A (P21)' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 233 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 291 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 23.3 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 262 0.004 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 406 1.150 3.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 43 0.049 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 126 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 90 0.310 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 150 0.272 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 38 0.110 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 4 0.060 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 32 0.375 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 22 0.125 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 4 0.096 0.200 ? 'X-RAY DIFFRACTION' ? r_scbond_it 282 1.030 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 406 1.517 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.540 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.127 _refine_ls_shell.number_reflns_R_work 262 _refine_ls_shell.R_factor_R_work 0.299 _refine_ls_shell.R_factor_R_free 0.222 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 11 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2AVH _struct.title 'G4T3G4 dimeric quadruplex structure' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AVH _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'quadruplex, loop, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2AVH _struct_ref.pdbx_db_accession 2AVH _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2AVH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 11 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2AVH _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 11 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_565 -x+1/2,-y+3/2,z -1.0000000000 0.0000000000 0.0000000000 14.9660000000 0.0000000000 -1.0000000000 0.0000000000 55.6680000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 6_565 B K . K ? ? A DG 1 A K 12 1_555 ? ? ? ? ? ? ? 2.691 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 6_565 B K . K ? ? A DG 2 A K 12 1_555 ? ? ? ? ? ? ? 3.015 ? ? metalc3 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 2 A K 13 1_555 ? ? ? ? ? ? ? 2.868 ? ? metalc4 metalc ? ? A DG 2 O6 ? ? ? 6_565 C K . K ? ? A DG 2 A K 13 1_555 ? ? ? ? ? ? ? 2.782 ? ? metalc5 metalc ? ? A DG 3 O6 ? ? ? 1_555 B K . K ? ? A DG 3 A K 12 1_555 ? ? ? ? ? ? ? 2.885 ? ? metalc6 metalc ? ? A DG 3 O6 ? ? ? 1_555 C K . K ? ? A DG 3 A K 13 1_555 ? ? ? ? ? ? ? 2.690 ? ? metalc7 metalc ? ? A DG 3 O6 ? ? ? 6_565 C K . K ? ? A DG 3 A K 13 1_555 ? ? ? ? ? ? ? 3.075 ? ? metalc8 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 4 A K 12 1_555 ? ? ? ? ? ? ? 2.731 ? ? metalc9 metalc ? ? A DG 8 O6 ? ? ? 1_555 B K . K ? ? A DG 8 A K 12 1_555 ? ? ? ? ? ? ? 2.797 ? ? metalc10 metalc ? ? A DG 8 N2 ? ? ? 6_565 E K . K ? ? A DG 8 A K 15 1_555 ? ? ? ? ? ? ? 3.700 ? ? metalc11 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 9 A K 12 1_555 ? ? ? ? ? ? ? 2.908 ? ? metalc12 metalc ? ? A DG 9 O6 ? ? ? 1_555 C K . K ? ? A DG 9 A K 13 1_555 ? ? ? ? ? ? ? 2.759 ? ? metalc13 metalc ? ? A DG 9 O6 ? ? ? 6_565 C K . K ? ? A DG 9 A K 13 1_555 ? ? ? ? ? ? ? 2.957 ? ? metalc14 metalc ? ? A DG 10 O6 ? ? ? 6_565 B K . K ? ? A DG 10 A K 12 1_555 ? ? ? ? ? ? ? 3.081 ? ? metalc15 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 13 1_555 ? ? ? ? ? ? ? 2.858 ? ? metalc16 metalc ? ? A DG 10 O6 ? ? ? 6_565 C K . K ? ? A DG 10 A K 13 1_555 ? ? ? ? ? ? ? 2.950 ? ? metalc17 metalc ? ? A DG 10 N2 ? ? ? 1_555 E K . K ? ? A DG 10 A K 15 1_555 ? ? ? ? ? ? ? 3.681 ? ? metalc18 metalc ? ? A DG 11 O6 ? ? ? 6_565 B K . K ? ? A DG 11 A K 12 1_555 ? ? ? ? ? ? ? 2.679 ? ? metalc19 metalc ? ? B K . K ? ? ? 1_555 C K . K ? ? A K 12 A K 13 1_555 ? ? ? ? ? ? ? 3.311 ? ? metalc20 metalc ? ? B K . K ? ? ? 1_555 C K . K ? ? A K 12 A K 13 6_565 ? ? ? ? ? ? ? 3.579 ? ? metalc21 metalc ? ? D K . K ? ? ? 1_555 F HOH . O ? ? A K 14 A HOH 55 1_555 ? ? ? ? ? ? ? 2.779 ? ? metalc22 metalc ? ? D K . K ? ? ? 1_555 F HOH . O ? ? A K 14 A HOH 55 4_575 ? ? ? ? ? ? ? 3.646 ? ? metalc23 metalc ? ? E K . K ? ? ? 1_555 F HOH . O ? ? A K 15 A HOH 25 6_565 ? ? ? ? ? ? ? 2.670 ? ? hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 11 N2 ? ? A DG 1 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 1 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 2 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 2 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 9 N2 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 9 N1 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 6_565 69.9 ? 2 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 116.3 ? 3 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 67.9 ? 4 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 74.3 ? 5 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 104.6 ? 6 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 72.8 ? 7 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 117.4 ? 8 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 169.2 ? 9 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 101.3 ? 10 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 71.6 ? 11 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 164.3 ? 12 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 103.7 ? 13 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 72.1 ? 14 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 121.4 ? 15 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 71.2 ? 16 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 99.0 ? 17 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 67.1 ? 18 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 105.7 ? 19 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 171.0 ? 20 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 117.2 ? 21 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 65.4 ? 22 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 76.0 ? 23 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 115.6 ? 24 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 167.0 ? 25 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 116.5 ? 26 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 74.8 ? 27 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 94.9 ? 28 O6 ? A DG 10 ? A DG 10 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 66.5 ? 29 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 121.4 ? 30 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 51.9 ? 31 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 50.9 ? 32 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 123.3 ? 33 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 121.2 ? 34 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 52.2 ? 35 O6 ? A DG 10 ? A DG 10 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 54.8 ? 36 O6 ? A DG 11 ? A DG 11 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 120.1 ? 37 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 119.2 ? 38 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 50.7 ? 39 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 55.6 ? 40 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 127.6 ? 41 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 123.3 ? 42 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 53.0 ? 43 O6 ? A DG 10 ? A DG 10 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 50.1 ? 44 O6 ? A DG 11 ? A DG 11 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 115.8 ? 45 K ? C K . ? A K 13 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 4.8 ? 46 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 6_565 75.8 ? 47 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 92.9 ? 48 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 74.0 ? 49 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 6_565 67.3 ? 50 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 6_565 86.8 ? 51 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 6_565 155.5 ? 52 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 162.7 ? 53 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 114.4 ? 54 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 77.5 ? 55 O6 ? A DG 3 ? A DG 3 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 125.3 ? 56 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 6_565 106.2 ? 57 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 6_565 151.5 ? 58 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 6_565 133.2 ? 59 O6 ? A DG 3 ? A DG 3 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 6_565 68.8 ? 60 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 6_565 72.0 ? 61 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 72.1 ? 62 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 136.3 ? 63 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 78.9 ? 64 O6 ? A DG 3 ? A DG 3 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 106.6 ? 65 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 91.8 ? 66 O6 ? A DG 9 ? A DG 9 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 67.7 ? 67 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 128.3 ? 68 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 71.9 ? 69 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 114.9 ? 70 O6 ? A DG 3 ? A DG 3 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 71.6 ? 71 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 69.1 ? 72 O6 ? A DG 9 ? A DG 9 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 86.1 ? 73 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 151.7 ? 74 N2 ? A DG 8 ? A DG 8 ? 6_565 K ? E K . ? A K 15 ? 1_555 N2 ? A DG 10 ? A DG 10 ? 1_555 53.4 ? 75 N2 ? A DG 8 ? A DG 8 ? 6_565 K ? E K . ? A K 15 ? 1_555 O ? F HOH . ? A HOH 25 ? 6_565 60.2 ? 76 N2 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 15 ? 1_555 O ? F HOH . ? A HOH 25 ? 6_565 110.0 ? 77 O ? F HOH . ? A HOH 55 ? 1_555 K ? D K . ? A K 14 ? 1_555 O ? F HOH . ? A HOH 55 ? 4_575 10.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 12 ? 10 'BINDING SITE FOR RESIDUE K A 12' AC2 Software A K 13 ? 10 'BINDING SITE FOR RESIDUE K A 13' AC3 Software A K 14 ? 1 'BINDING SITE FOR RESIDUE K A 14' AC4 Software A K 15 ? 2 'BINDING SITE FOR RESIDUE K A 15' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DG A 1 ? DG A 1 . ? 6_565 ? 2 AC1 10 DG A 2 ? DG A 2 . ? 6_565 ? 3 AC1 10 DG A 3 ? DG A 3 . ? 1_555 ? 4 AC1 10 DG A 4 ? DG A 4 . ? 1_555 ? 5 AC1 10 DG A 8 ? DG A 8 . ? 1_555 ? 6 AC1 10 DG A 9 ? DG A 9 . ? 1_555 ? 7 AC1 10 DG A 10 ? DG A 10 . ? 6_565 ? 8 AC1 10 DG A 11 ? DG A 11 . ? 6_565 ? 9 AC1 10 K C . ? K A 13 . ? 6_565 ? 10 AC1 10 K C . ? K A 13 . ? 1_555 ? 11 AC2 10 DG A 2 ? DG A 2 . ? 1_555 ? 12 AC2 10 DG A 2 ? DG A 2 . ? 6_565 ? 13 AC2 10 DG A 3 ? DG A 3 . ? 6_565 ? 14 AC2 10 DG A 3 ? DG A 3 . ? 1_555 ? 15 AC2 10 DG A 9 ? DG A 9 . ? 1_555 ? 16 AC2 10 DG A 9 ? DG A 9 . ? 6_565 ? 17 AC2 10 DG A 10 ? DG A 10 . ? 6_565 ? 18 AC2 10 DG A 10 ? DG A 10 . ? 1_555 ? 19 AC2 10 K B . ? K A 12 . ? 1_555 ? 20 AC2 10 K B . ? K A 12 . ? 6_565 ? 21 AC3 1 HOH F . ? HOH A 55 . ? 1_555 ? 22 AC4 2 DG A 10 ? DG A 10 . ? 1_555 ? 23 AC4 2 HOH F . ? HOH A 25 . ? 6_565 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 9 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 9 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 9 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 112.01 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 3.71 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A K 13 ? C K . 2 1 A HOH 20 ? F HOH . # _pdbx_phasing_MR.entry_id 2AVH _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 0.645 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.232 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation ? _pdbx_phasing_MR.d_res_low_rotation ? _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 25.000 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 K K K N N 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2AVH 'double helix' 2AVH 'hairpin loop' 2AVH 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DG 11 1_555 -1.659 -3.318 0.900 -31.394 9.060 90.287 1 A_DG1:DG11_A A 1 ? A 11 ? 6 ? 1 A DG 2 1_555 A DG 10 1_555 1.698 3.540 -0.257 9.947 11.659 -88.288 2 A_DG2:DG10_A A 2 ? A 10 ? 6 ? 1 A DG 3 1_555 A DG 9 1_555 -1.804 -3.425 0.138 -4.214 -9.864 88.809 3 A_DG3:DG9_A A 3 ? A 9 ? 6 ? 1 A DG 4 1_555 A DG 8 1_555 1.613 3.375 -0.641 14.696 -14.174 -90.722 4 A_DG4:DG8_A A 4 ? A 8 ? 6 ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DG 11 1_555 A DG 2 1_555 A DG 10 1_555 2.206 3.290 0.761 -87.462 155.182 -150.118 -1.704 1.069 0.275 -77.618 -43.747 -179.518 1 AA_DG1DG2:DG10DG11_AA A 1 ? A 11 ? A 2 ? A 10 ? 1 A DG 2 1_555 A DG 10 1_555 A DG 3 1_555 A DG 9 1_555 -1.113 -3.127 -0.111 -133.335 97.988 174.548 -1.562 0.559 -0.155 48.999 66.674 179.311 2 AA_DG2DG3:DG9DG10_AA A 2 ? A 10 ? A 3 ? A 9 ? 1 A DG 3 1_555 A DG 9 1_555 A DG 4 1_555 A DG 8 1_555 2.431 2.570 1.699 -85.558 156.374 -37.131 -1.666 1.007 -0.490 -78.710 -43.066 -178.341 3 AA_DG3DG4:DG8DG9_AA A 3 ? A 9 ? A 4 ? A 8 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'GGGG(+U)TTGGGG chain A (P21)' # _atom_sites.entry_id 2AVH _atom_sites.fract_transf_matrix[1][1] 0.03341 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02695 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.02291 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P # loop_