data_2B1D # _entry.id 2B1D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2B1D pdb_00002b1d 10.2210/pdb2b1d/pdb NDB BD0090 ? ? RCSB RCSB034553 ? ? WWPDB D_1000034553 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2B1B ;5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3' Zif268 binding site ; unspecified PDB 2B1C ;5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3' Zif268 binding site ; unspecified # _pdbx_database_status.entry_id 2B1D _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-09-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Berman, H.M.' 1 'Locasale, J.W.' 2 'Napoli, A.A.' 3 # _citation.id primary _citation.title 'Signatures of protein-DNA recognition in free DNA binding sites.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 386 _citation.page_first 1054 _citation.page_last 1065 _citation.year 2009 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19244617 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Locasale, J.W.' 1 ? primary 'Napoli, A.A.' 2 ? primary 'Chen, S.' 3 ? primary 'Berman, H.M.' 4 ? primary 'Lawson, C.L.' 5 ? # _cell.length_a 39.980 _cell.length_b 40.346 _cell.length_c 40.255 _cell.angle_alpha 82.15 _cell.angle_beta 69.13 _cell.angle_gamma 81.44 _cell.entry_id 2B1D _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1' _symmetry.entry_id 2B1D _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 1 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*AP*GP*AP*CP*GP*TP*CP*TP*GP*C)-3'" 3663.392 6 ? ? ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 3 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 56 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DA)(DG)(DA)(DC)(DG)(DT)(DC)(DT)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCAGACGTCTGC _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DA n 1 4 DG n 1 5 DA n 1 6 DC n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DT n 1 11 DG n 1 12 DC n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2B1D _struct_ref.pdbx_db_accession 2B1D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2B1D A 1 ? 12 ? 2B1D 1 ? 12 ? 1 12 2 1 2B1D B 1 ? 12 ? 2B1D 13 ? 24 ? 13 24 3 1 2B1D C 1 ? 12 ? 2B1D 1 ? 12 ? 1 12 4 1 2B1D D 1 ? 12 ? 2B1D 13 ? 24 ? 13 24 5 1 2B1D E 1 ? 12 ? 2B1D 1 ? 12 ? 1 12 6 1 2B1D F 1 ? 12 ? 2B1D 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 # _exptl.entry_id 2B1D _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.8 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'MPD, sodium cacodylate, cobalt hexamine, magnesium chloride, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'cobalt hexamine' ? ? ? 1 4 1 'magnesium chloride' ? ? ? 1 5 1 H2O ? ? ? 1 6 2 MPD ? ? ? 1 7 2 'sodium cacodylate' ? ? ? 1 8 2 'cobalt hexamine' ? ? ? 1 9 2 'magnesium chloride' ? ? ? 1 10 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-10-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1004 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X26C' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1004 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X26C # _reflns.entry_id 2B1D _reflns.d_resolution_low 99.00 _reflns.d_resolution_high 2.50 _reflns.number_obs 7790 _reflns.percent_possible_obs 97.700 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_chi_squared 1.483 _reflns.pdbx_redundancy 4.3 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all 7790 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_low 2.57 _reflns_shell.d_res_high 2.50 _reflns_shell.number_measured_obs 614 _reflns_shell.percent_possible_obs 97.600 _reflns_shell.Rmerge_I_obs 0.199 _reflns_shell.pdbx_chi_squared 1.936 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.percent_possible_all 97.6 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 39.840 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.340 _refine.ls_number_reflns_obs 7684 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.239 _refine.ls_R_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.284 _refine.ls_percent_reflns_R_free 8.100 _refine.ls_number_reflns_R_free 624 _refine.B_iso_mean 51.029 _refine.aniso_B[1][1] 0.710 _refine.aniso_B[2][2] -0.510 _refine.aniso_B[3][3] 1.700 _refine.aniso_B[1][2] -0.630 _refine.aniso_B[1][3] -2.490 _refine.aniso_B[2][3] 0.230 _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.pdbx_overall_ESU_R 0.787 _refine.pdbx_overall_ESU_R_Free 0.343 _refine.overall_SU_ML 0.282 _refine.overall_SU_B 13.384 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2B1D _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 7684 _refine.ls_R_factor_obs 0.239 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'NDB ID BD0001 (PDB ID 423D)' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1458 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 1536 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 39.840 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1656 0.018 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2568 7.661 3.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 216 0.132 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 766 0.049 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 615 0.228 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 91 0.350 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 55 0.247 0.200 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1656 8.551 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 2568 12.396 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.885 _refine_ls_shell.pdbx_total_number_of_bins_used 4 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 2468 _refine_ls_shell.R_factor_R_work 0.442 _refine_ls_shell.R_factor_R_free 0.535 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 203 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2B1D _struct.title ;5'-D(*GP*CP*AP*GP*AP*CP*GP*TP*CP*TP*GP*C)-3' Methionine Repressor binding site ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2B1D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'sequence dependent DNA deformability, protein-DNA recognition, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 3 ? I N N 2 ? J N N 2 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? 3 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? K HOH . O ? ? ? 1_555 H MG . MG ? ? A HOH 2646 B MG 2383 1_555 ? ? ? ? ? ? ? 1.972 ? ? metalc2 metalc ? ? K HOH . O ? ? ? 1_555 H MG . MG ? ? A HOH 2647 B MG 2383 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc3 metalc ? ? K HOH . O ? ? ? 1_555 H MG . MG ? ? A HOH 2649 B MG 2383 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc4 metalc ? ? H MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 2383 B HOH 2645 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc5 metalc ? ? H MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 2383 B HOH 2648 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc6 metalc ? ? H MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 2383 B HOH 2650 1_555 ? ? ? ? ? ? ? 2.115 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 3 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 3 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 7 N2 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 7 N1 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 12 N3 ? ? C DG 1 D DC 24 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog32 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 11 N1 ? ? C DC 2 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 11 O6 ? ? C DC 2 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 11 N2 ? ? C DC 2 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 10 N3 ? ? C DA 3 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 10 O4 ? ? C DA 3 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 4 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 4 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 4 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 5 D DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 5 D DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 6 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 6 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 6 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 7 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 7 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 7 D DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 8 D DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 8 D DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 9 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 9 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 9 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 10 D DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 10 D DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DG 11 N1 ? ? ? 1_555 D DC 2 O2 ? ? C DG 11 D DC 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog56 hydrog ? ? C DG 11 N2 ? ? ? 1_555 D DC 2 N3 ? ? C DG 11 D DC 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog57 hydrog ? ? C DC 12 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 12 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 12 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 12 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DG 1 N1 ? ? ? 1_555 F DC 12 N3 ? ? E DG 1 F DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DG 1 N2 ? ? ? 1_555 F DC 12 O2 ? ? E DG 1 F DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DG 1 O6 ? ? ? 1_555 F DC 12 N4 ? ? E DG 1 F DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DC 2 N3 ? ? ? 1_555 F DG 11 N1 ? ? E DC 2 F DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DC 2 N4 ? ? ? 1_555 F DG 11 O6 ? ? E DC 2 F DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E DC 2 O2 ? ? ? 1_555 F DG 11 N2 ? ? E DC 2 F DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E DA 3 N1 ? ? ? 1_555 F DT 10 N3 ? ? E DA 3 F DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E DA 3 N6 ? ? ? 1_555 F DT 10 O4 ? ? E DA 3 F DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E DG 4 N1 ? ? ? 1_555 F DC 9 N3 ? ? E DG 4 F DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E DG 4 N2 ? ? ? 1_555 F DC 9 O2 ? ? E DG 4 F DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E DG 4 O6 ? ? ? 1_555 F DC 9 N4 ? ? E DG 4 F DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E DA 5 N1 ? ? ? 1_555 F DT 8 N3 ? ? E DA 5 F DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E DA 5 N6 ? ? ? 1_555 F DT 8 O4 ? ? E DA 5 F DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E DC 6 N3 ? ? ? 1_555 F DG 7 N1 ? ? E DC 6 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E DC 6 N4 ? ? ? 1_555 F DG 7 O6 ? ? E DC 6 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? E DC 6 O2 ? ? ? 1_555 F DG 7 N2 ? ? E DC 6 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? E DG 7 N1 ? ? ? 1_555 F DC 6 N3 ? ? E DG 7 F DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? E DG 7 N2 ? ? ? 1_555 F DC 6 O2 ? ? E DG 7 F DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? E DG 7 O6 ? ? ? 1_555 F DC 6 N4 ? ? E DG 7 F DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? E DT 8 N3 ? ? ? 1_555 F DA 5 N1 ? ? E DT 8 F DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? E DT 8 O4 ? ? ? 1_555 F DA 5 N6 ? ? E DT 8 F DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? E DC 9 N3 ? ? ? 1_555 F DG 4 N1 ? ? E DC 9 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? E DC 9 N4 ? ? ? 1_555 F DG 4 O6 ? ? E DC 9 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? E DC 9 O2 ? ? ? 1_555 F DG 4 N2 ? ? E DC 9 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? E DT 10 N3 ? ? ? 1_555 F DA 3 N1 ? ? E DT 10 F DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? E DT 10 O4 ? ? ? 1_555 F DA 3 N6 ? ? E DT 10 F DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? E DG 11 N1 ? ? ? 1_555 F DC 2 N3 ? ? E DG 11 F DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? E DG 11 N2 ? ? ? 1_555 F DC 2 O2 ? ? E DG 11 F DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? E DG 11 O6 ? ? ? 1_555 F DC 2 N4 ? ? E DG 11 F DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? E DC 12 N3 ? ? ? 1_555 F DG 1 N1 ? ? E DC 12 F DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? E DC 12 N4 ? ? ? 1_555 F DG 1 O6 ? ? E DC 12 F DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? E DC 12 O2 ? ? ? 1_555 F DG 1 N2 ? ? E DC 12 F DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 2383 ? 6 'BINDING SITE FOR RESIDUE MG B 2383' AC2 Software A NCO 2505 ? 5 'BINDING SITE FOR RESIDUE NCO A 2505' AC3 Software F NCO 2506 ? 6 'BINDING SITE FOR RESIDUE NCO F 2506' AC4 Software C NCO 2507 ? 6 'BINDING SITE FOR RESIDUE NCO C 2507' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH K . ? HOH A 2646 . ? 1_555 ? 2 AC1 6 HOH K . ? HOH A 2647 . ? 1_555 ? 3 AC1 6 HOH K . ? HOH A 2649 . ? 1_555 ? 4 AC1 6 HOH L . ? HOH B 2645 . ? 1_555 ? 5 AC1 6 HOH L . ? HOH B 2648 . ? 1_555 ? 6 AC1 6 HOH L . ? HOH B 2650 . ? 1_555 ? 7 AC2 5 DA A 3 ? DA A 3 . ? 1_555 ? 8 AC2 5 DG A 4 ? DG A 4 . ? 1_555 ? 9 AC2 5 HOH K . ? HOH A 2512 . ? 1_555 ? 10 AC2 5 DT B 8 ? DT B 20 . ? 1_555 ? 11 AC2 5 DG C 4 ? DG C 4 . ? 1_555 ? 12 AC3 6 DA A 3 ? DA A 3 . ? 1_555 ? 13 AC3 6 DA C 3 ? DA C 3 . ? 1_555 ? 14 AC3 6 DT E 8 ? DT E 8 . ? 1_555 ? 15 AC3 6 DA F 3 ? DA F 15 . ? 1_555 ? 16 AC3 6 DG F 4 ? DG F 16 . ? 1_555 ? 17 AC3 6 DA F 5 ? DA F 17 . ? 1_555 ? 18 AC4 6 DG A 4 ? DG A 4 . ? 1_555 ? 19 AC4 6 DA C 3 ? DA C 3 . ? 1_555 ? 20 AC4 6 DG C 4 ? DG C 4 . ? 1_555 ? 21 AC4 6 HOH M . ? HOH C 2636 . ? 1_555 ? 22 AC4 6 DT D 8 ? DT D 20 . ? 1_555 ? 23 AC4 6 DC E 6 ? DC E 6 . ? 1_555 ? # _atom_sites.entry_id 2B1D _atom_sites.fract_transf_matrix[1][1] 0.02501 _atom_sites.fract_transf_matrix[1][2] -0.00376 _atom_sites.fract_transf_matrix[1][3] -0.00923 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02506 _atom_sites.fract_transf_matrix[2][3] -0.00228 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.02670 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DC 12 12 12 DC C A . n B 1 1 DG 1 13 13 DG G B . n B 1 2 DC 2 14 14 DC C B . n B 1 3 DA 3 15 15 DA A B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DC 6 18 18 DC C B . n B 1 7 DG 7 19 19 DG G B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DT 10 22 22 DT T B . n B 1 11 DG 11 23 23 DG G B . n B 1 12 DC 12 24 24 DC C B . n C 1 1 DG 1 1 1 DG G C . n C 1 2 DC 2 2 2 DC C C . n C 1 3 DA 3 3 3 DA A C . n C 1 4 DG 4 4 4 DG G C . n C 1 5 DA 5 5 5 DA A C . n C 1 6 DC 6 6 6 DC C C . n C 1 7 DG 7 7 7 DG G C . n C 1 8 DT 8 8 8 DT T C . n C 1 9 DC 9 9 9 DC C C . n C 1 10 DT 10 10 10 DT T C . n C 1 11 DG 11 11 11 DG G C . n C 1 12 DC 12 12 12 DC C C . n D 1 1 DG 1 13 13 DG G D . n D 1 2 DC 2 14 14 DC C D . n D 1 3 DA 3 15 15 DA A D . n D 1 4 DG 4 16 16 DG G D . n D 1 5 DA 5 17 17 DA A D . n D 1 6 DC 6 18 18 DC C D . n D 1 7 DG 7 19 19 DG G D . n D 1 8 DT 8 20 20 DT T D . n D 1 9 DC 9 21 21 DC C D . n D 1 10 DT 10 22 22 DT T D . n D 1 11 DG 11 23 23 DG G D . n D 1 12 DC 12 24 24 DC C D . n E 1 1 DG 1 1 1 DG G E . n E 1 2 DC 2 2 2 DC C E . n E 1 3 DA 3 3 3 DA A E . n E 1 4 DG 4 4 4 DG G E . n E 1 5 DA 5 5 5 DA A E . n E 1 6 DC 6 6 6 DC C E . n E 1 7 DG 7 7 7 DG G E . n E 1 8 DT 8 8 8 DT T E . n E 1 9 DC 9 9 9 DC C E . n E 1 10 DT 10 10 10 DT T E . n E 1 11 DG 11 11 11 DG G E . n E 1 12 DC 12 12 12 DC C E . n F 1 1 DG 1 13 13 DG G F . n F 1 2 DC 2 14 14 DC C F . n F 1 3 DA 3 15 15 DA A F . n F 1 4 DG 4 16 16 DG G F . n F 1 5 DA 5 17 17 DA A F . n F 1 6 DC 6 18 18 DC C F . n F 1 7 DG 7 19 19 DG G F . n F 1 8 DT 8 20 20 DT T F . n F 1 9 DC 9 21 21 DC C F . n F 1 10 DT 10 22 22 DT T F . n F 1 11 DG 11 23 23 DG G F . n F 1 12 DC 12 24 24 DC C F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NCO 1 2505 2505 NCO NCO A . H 3 MG 1 2383 2383 MG MO6 B . I 2 NCO 1 2507 2507 NCO NCO C . J 2 NCO 1 2506 2506 NCO NCO F . K 4 HOH 1 2512 2512 HOH HOH A . K 4 HOH 2 2524 2524 HOH HOH A . K 4 HOH 3 2531 2531 HOH HOH A . K 4 HOH 4 2543 2543 HOH HOH A . K 4 HOH 5 2546 2546 HOH HOH A . K 4 HOH 6 2553 2553 HOH HOH A . K 4 HOH 7 2554 2554 HOH HOH A . K 4 HOH 8 2562 2562 HOH HOH A . K 4 HOH 9 2571 2571 HOH HOH A . K 4 HOH 10 2610 2610 HOH HOH A . K 4 HOH 11 2634 2634 HOH HOH A . K 4 HOH 12 2646 2383 HOH MO6 A . K 4 HOH 13 2647 2383 HOH MO6 A . K 4 HOH 14 2649 2383 HOH MO6 A . L 4 HOH 1 2511 2511 HOH HOH B . L 4 HOH 2 2518 2518 HOH HOH B . L 4 HOH 3 2519 2519 HOH HOH B . L 4 HOH 4 2575 2575 HOH HOH B . L 4 HOH 5 2606 2606 HOH HOH B . L 4 HOH 6 2632 2632 HOH HOH B . L 4 HOH 7 2645 2383 HOH MO6 B . L 4 HOH 8 2648 2383 HOH MO6 B . L 4 HOH 9 2650 2383 HOH MO6 B . M 4 HOH 1 2528 2528 HOH HOH C . M 4 HOH 2 2534 2534 HOH HOH C . M 4 HOH 3 2555 2555 HOH HOH C . M 4 HOH 4 2615 2615 HOH HOH C . M 4 HOH 5 2625 2625 HOH HOH C . M 4 HOH 6 2631 2631 HOH HOH C . M 4 HOH 7 2635 2635 HOH HOH C . M 4 HOH 8 2636 2636 HOH HOH C . N 4 HOH 1 2537 2537 HOH HOH D . N 4 HOH 2 2547 2547 HOH HOH D . N 4 HOH 3 2567 2567 HOH HOH D . N 4 HOH 4 2581 2581 HOH HOH D . N 4 HOH 5 2585 2585 HOH HOH D . N 4 HOH 6 2620 2620 HOH HOH D . N 4 HOH 7 2624 2624 HOH HOH D . N 4 HOH 8 2630 2630 HOH HOH D . N 4 HOH 9 2637 2637 HOH HOH D . N 4 HOH 10 2638 2638 HOH HOH D . N 4 HOH 11 2639 2639 HOH HOH D . N 4 HOH 12 2641 2641 HOH HOH D . O 4 HOH 1 2522 2522 HOH HOH E . O 4 HOH 2 2576 2576 HOH HOH E . O 4 HOH 3 2603 2603 HOH HOH E . O 4 HOH 4 2640 2640 HOH HOH E . O 4 HOH 5 2642 2642 HOH HOH E . P 4 HOH 1 2509 2509 HOH HOH F . P 4 HOH 2 2527 2527 HOH HOH F . P 4 HOH 3 2536 2536 HOH HOH F . P 4 HOH 4 2601 2601 HOH HOH F . P 4 HOH 5 2611 2611 HOH HOH F . P 4 HOH 6 2621 2621 HOH HOH F . P 4 HOH 7 2643 2643 HOH HOH F . P 4 HOH 8 2644 2644 HOH HOH F . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H,K,L 2 1 C,D,I,M,N 3 1 E,F,J,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? K HOH . ? A HOH 2646 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? K HOH . ? A HOH 2647 ? 1_555 89.0 ? 2 O ? K HOH . ? A HOH 2646 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? K HOH . ? A HOH 2649 ? 1_555 87.5 ? 3 O ? K HOH . ? A HOH 2647 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? K HOH . ? A HOH 2649 ? 1_555 84.2 ? 4 O ? K HOH . ? A HOH 2646 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2645 ? 1_555 177.7 ? 5 O ? K HOH . ? A HOH 2647 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2645 ? 1_555 88.8 ? 6 O ? K HOH . ? A HOH 2649 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2645 ? 1_555 91.5 ? 7 O ? K HOH . ? A HOH 2646 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2648 ? 1_555 94.0 ? 8 O ? K HOH . ? A HOH 2647 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2648 ? 1_555 174.9 ? 9 O ? K HOH . ? A HOH 2649 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2648 ? 1_555 91.7 ? 10 O ? L HOH . ? B HOH 2645 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2648 ? 1_555 88.2 ? 11 O ? K HOH . ? A HOH 2646 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2650 ? 1_555 90.6 ? 12 O ? K HOH . ? A HOH 2647 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2650 ? 1_555 89.8 ? 13 O ? K HOH . ? A HOH 2649 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2650 ? 1_555 173.8 ? 14 O ? L HOH . ? B HOH 2645 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2650 ? 1_555 90.1 ? 15 O ? L HOH . ? B HOH 2648 ? 1_555 MG ? H MG . ? B MG 2383 ? 1_555 O ? L HOH . ? B HOH 2650 ? 1_555 94.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-09-27 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.value' 10 5 'Structure model' '_struct_conn.pdbx_dist_value' 11 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -38.1293 -23.7653 27.8991 0.3008 0.1786 0.0670 0.0685 -0.0510 -0.0043 1.4594 0.1132 4.2628 0.6864 0.9726 0.0495 0.2173 0.0663 -0.2835 0.1279 -0.0979 -0.0369 -0.0937 0.4700 0.1208 'X-RAY DIFFRACTION' 2 ? refined -33.2810 -8.0540 30.4043 0.0902 0.1852 0.2189 0.0292 0.0314 0.0773 3.4059 0.9713 0.6450 0.2768 0.0540 -0.0573 -0.0388 0.0090 0.0297 0.2407 0.4342 -0.1388 0.0112 0.0587 0.0294 'X-RAY DIFFRACTION' 3 ? refined -46.9346 -9.1296 46.0194 0.2498 0.0004 0.1975 -0.0103 0.0197 -0.0011 0.8677 6.9103 1.2868 1.0628 0.0350 -0.0484 0.0270 -0.1275 0.1005 0.0243 0.1806 0.3281 -0.0404 -0.0751 -0.0493 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 12 ALL A 1 A 12 'X-RAY DIFFRACTION' ? 2 1 B 1 B 12 ALL B 13 B 24 'X-RAY DIFFRACTION' ? 3 2 C 1 C 12 ALL C 1 C 12 'X-RAY DIFFRACTION' ? 4 2 D 1 D 12 ALL D 13 D 24 'X-RAY DIFFRACTION' ? 5 3 E 1 E 12 ALL E 1 E 12 'X-RAY DIFFRACTION' ? 6 3 F 1 F 12 ALL F 13 F 24 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.1.24 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 3 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 EPMR . ? ? ? ? phasing ? ? ? 7 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 A DA 5 ? ? O A HOH 2546 ? ? 2.07 2 1 O2 A DC 6 ? ? N2 B DG 19 ? ? 2.11 3 1 O6 C DG 11 ? ? N4 D DC 14 ? ? 2.17 4 1 N2 C DG 11 ? ? O2 D DC 14 ? ? 2.19 5 1 O6 C DG 1 ? ? N4 D DC 24 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N9 A DA 3 ? ? C4 A DA 3 ? ? 1.415 1.374 0.041 0.006 N 2 1 C2 A DC 6 ? ? O2 A DC 6 ? ? 1.299 1.240 0.059 0.009 N 3 1 N1 B DG 19 ? ? C2 B DG 19 ? ? 1.426 1.373 0.053 0.008 N 4 1 C4 B DT 20 ? ? O4 B DT 20 ? ? 1.162 1.228 -0.066 0.009 N 5 1 C5 C DA 3 ? ? C6 C DA 3 ? ? 1.460 1.406 0.054 0.009 N 6 1 C6 C DG 7 ? ? O6 C DG 7 ? ? 1.179 1.237 -0.058 0.009 N 7 1 C4 D DT 20 ? ? O4 D DT 20 ? ? 1.110 1.228 -0.118 0.009 N 8 1 C6 E DG 1 ? ? O6 E DG 1 ? ? 1.296 1.237 0.059 0.009 N 9 1 C4 E DC 2 ? ? N4 E DC 2 ? ? 1.390 1.335 0.055 0.009 N 10 1 C4 F DT 22 ? ? C5 F DT 22 ? ? 1.386 1.445 -0.059 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DC 6 ? ? "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? 102.01 110.10 -8.09 1.00 N 2 1 "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? "C1'" A DC 6 ? ? 95.86 102.40 -6.54 0.80 N 3 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.23 108.30 1.93 0.30 N 4 1 "O5'" A DC 9 ? ? P A DC 9 ? ? OP1 A DC 9 ? ? 99.44 105.70 -6.26 0.90 N 5 1 "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? "C1'" B DG 16 ? ? 96.94 102.40 -5.46 0.80 N 6 1 "O5'" C DG 1 ? ? "C5'" C DG 1 ? ? "C4'" C DG 1 ? ? 101.77 109.40 -7.63 0.80 N 7 1 "O4'" C DC 6 ? ? "C1'" C DC 6 ? ? N1 C DC 6 ? ? 110.11 108.30 1.81 0.30 N 8 1 "O5'" F DG 13 ? ? "C5'" F DG 13 ? ? "C4'" F DG 13 ? ? 97.03 109.40 -12.37 0.80 N 9 1 "O3'" F DG 13 ? ? P F DC 14 ? ? OP2 F DC 14 ? ? 117.77 110.50 7.27 1.10 Y 10 1 "O5'" F DC 14 ? ? P F DC 14 ? ? OP1 F DC 14 ? ? 99.97 105.70 -5.73 0.90 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 1 ? ? 0.109 'SIDE CHAIN' 2 1 DT A 10 ? ? 0.076 'SIDE CHAIN' 3 1 DT B 20 ? ? 0.080 'SIDE CHAIN' 4 1 DT B 22 ? ? 0.101 'SIDE CHAIN' 5 1 DG C 4 ? ? 0.080 'SIDE CHAIN' 6 1 DT C 8 ? ? 0.069 'SIDE CHAIN' 7 1 DG D 19 ? ? 0.059 'SIDE CHAIN' 8 1 DA E 3 ? ? 0.098 'SIDE CHAIN' 9 1 DG E 11 ? ? 0.051 'SIDE CHAIN' 10 1 DC E 12 ? ? 0.062 'SIDE CHAIN' 11 1 DG F 13 ? ? 0.083 'SIDE CHAIN' 12 1 DA F 17 ? ? 0.058 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 NCO CO CO N N 148 NCO N1 N N N 149 NCO N2 N N N 150 NCO N3 N N N 151 NCO N4 N N N 152 NCO N5 N N N 153 NCO N6 N N N 154 NCO HN11 H N N 155 NCO HN12 H N N 156 NCO HN13 H N N 157 NCO HN21 H N N 158 NCO HN22 H N N 159 NCO HN23 H N N 160 NCO HN31 H N N 161 NCO HN32 H N N 162 NCO HN33 H N N 163 NCO HN41 H N N 164 NCO HN42 H N N 165 NCO HN43 H N N 166 NCO HN51 H N N 167 NCO HN52 H N N 168 NCO HN53 H N N 169 NCO HN61 H N N 170 NCO HN62 H N N 171 NCO HN63 H N N 172 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 NCO CO N1 sing N N 152 NCO CO N2 sing N N 153 NCO CO N3 sing N N 154 NCO CO N4 sing N N 155 NCO CO N5 sing N N 156 NCO CO N6 sing N N 157 NCO N1 HN11 sing N N 158 NCO N1 HN12 sing N N 159 NCO N1 HN13 sing N N 160 NCO N2 HN21 sing N N 161 NCO N2 HN22 sing N N 162 NCO N2 HN23 sing N N 163 NCO N3 HN31 sing N N 164 NCO N3 HN32 sing N N 165 NCO N3 HN33 sing N N 166 NCO N4 HN41 sing N N 167 NCO N4 HN42 sing N N 168 NCO N4 HN43 sing N N 169 NCO N5 HN51 sing N N 170 NCO N5 HN52 sing N N 171 NCO N5 HN53 sing N N 172 NCO N6 HN61 sing N N 173 NCO N6 HN62 sing N N 174 NCO N6 HN63 sing N N 175 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2B1D 'double helix' 2B1D 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 12 1_555 -0.497 -0.626 -0.080 2.074 0.943 -1.641 1 A_DG1:DC24_B A 1 ? B 24 ? 19 1 1 A DC 2 1_555 B DG 11 1_555 0.081 -0.532 -0.084 -2.177 -5.664 -6.907 2 A_DC2:DG23_B A 2 ? B 23 ? 19 1 1 A DA 3 1_555 B DT 10 1_555 -0.017 -0.149 0.309 2.440 -12.669 -0.035 3 A_DA3:DT22_B A 3 ? B 22 ? 20 1 1 A DG 4 1_555 B DC 9 1_555 -0.273 -0.318 0.209 9.284 -3.734 1.183 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.735 -0.174 0.167 6.207 -12.097 -1.397 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DC 6 1_555 B DG 7 1_555 -0.016 -0.571 0.234 5.472 -1.846 4.953 6 A_DC6:DG19_B A 6 ? B 19 ? 22 1 1 A DG 7 1_555 B DC 6 1_555 -0.133 -0.522 0.326 -4.800 -15.531 -2.120 7 A_DG7:DC18_B A 7 ? B 18 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 -0.214 0.245 0.295 -12.765 -9.488 7.877 8 A_DT8:DA17_B A 8 ? B 17 ? ? ? 1 A DC 9 1_555 B DG 4 1_555 0.593 0.045 0.226 -17.273 1.569 -2.148 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DT 10 1_555 B DA 3 1_555 -1.635 -0.064 -0.185 -2.404 -7.234 -7.243 10 A_DT10:DA15_B A 10 ? B 15 ? 20 1 1 A DG 11 1_555 B DC 2 1_555 0.872 -0.586 -0.215 0.349 -9.626 3.423 11 A_DG11:DC14_B A 11 ? B 14 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.254 -0.687 -0.635 4.430 -5.075 -4.176 12 A_DC12:DG13_B A 12 ? B 13 ? 19 1 1 C DG 1 1_555 D DC 12 1_555 0.257 -0.661 -0.351 -3.270 -5.075 -6.726 13 C_DG1:DC24_D C 1 ? D 24 ? ? 1 1 C DC 2 1_555 D DG 11 1_555 0.436 -0.539 -0.206 -2.547 0.171 -1.786 14 C_DC2:DG23_D C 2 ? D 23 ? 19 1 1 C DA 3 1_555 D DT 10 1_555 0.474 0.249 0.185 -4.143 -9.406 1.754 15 C_DA3:DT22_D C 3 ? D 22 ? 20 1 1 C DG 4 1_555 D DC 9 1_555 0.272 -0.187 0.148 7.313 -6.848 1.910 16 C_DG4:DC21_D C 4 ? D 21 ? 19 1 1 C DA 5 1_555 D DT 8 1_555 0.238 -0.221 0.200 7.884 -8.780 0.612 17 C_DA5:DT20_D C 5 ? D 20 ? 20 1 1 C DC 6 1_555 D DG 7 1_555 0.296 -0.711 -0.085 6.110 -1.541 -2.042 18 C_DC6:DG19_D C 6 ? D 19 ? 19 1 1 C DG 7 1_555 D DC 6 1_555 -0.155 -0.445 0.092 -13.013 -15.065 -1.025 19 C_DG7:DC18_D C 7 ? D 18 ? 19 1 1 C DT 8 1_555 D DA 5 1_555 -0.646 -0.439 0.120 -10.549 -4.417 -7.980 20 C_DT8:DA17_D C 8 ? D 17 ? 20 1 1 C DC 9 1_555 D DG 4 1_555 -0.064 -0.246 0.302 -10.584 2.315 -2.891 21 C_DC9:DG16_D C 9 ? D 16 ? 19 1 1 C DT 10 1_555 D DA 3 1_555 -0.726 0.336 -0.003 -4.420 -5.400 -0.956 22 C_DT10:DA15_D C 10 ? D 15 ? 20 1 1 C DG 11 1_555 D DC 2 1_555 0.175 -0.819 -0.157 3.218 -0.914 -3.713 23 C_DG11:DC14_D C 11 ? D 14 ? 22 1 1 C DC 12 1_555 D DG 1 1_555 0.404 -0.554 -0.292 0.068 -1.915 -5.495 24 C_DC12:DG13_D C 12 ? D 13 ? 19 1 1 E DG 1 1_555 F DC 12 1_555 -1.349 -0.609 0.364 -4.565 0.188 0.438 25 E_DG1:DC24_F E 1 ? F 24 ? 19 1 1 E DC 2 1_555 F DG 11 1_555 -0.831 -0.464 0.039 -2.868 0.964 0.566 26 E_DC2:DG23_F E 2 ? F 23 ? 19 1 1 E DA 3 1_555 F DT 10 1_555 -0.827 -0.478 0.005 2.189 -4.056 -8.506 27 E_DA3:DT22_F E 3 ? F 22 ? 20 1 1 E DG 4 1_555 F DC 9 1_555 -0.248 -0.079 0.498 15.030 -3.810 2.937 28 E_DG4:DC21_F E 4 ? F 21 ? 19 1 1 E DA 5 1_555 F DT 8 1_555 0.517 0.061 -0.106 1.283 -6.138 -1.718 29 E_DA5:DT20_F E 5 ? F 20 ? 20 1 1 E DC 6 1_555 F DG 7 1_555 -0.354 -0.295 0.207 9.663 -7.173 -0.043 30 E_DC6:DG19_F E 6 ? F 19 ? 19 1 1 E DG 7 1_555 F DC 6 1_555 -0.464 -0.471 0.059 -2.581 -9.169 2.776 31 E_DG7:DC18_F E 7 ? F 18 ? 19 1 1 E DT 8 1_555 F DA 5 1_555 -0.527 -0.489 0.152 -6.216 -14.377 -6.467 32 E_DT8:DA17_F E 8 ? F 17 ? 20 1 1 E DC 9 1_555 F DG 4 1_555 0.472 0.003 0.267 -10.597 -7.722 8.560 33 E_DC9:DG16_F E 9 ? F 16 ? 19 1 1 E DT 10 1_555 F DA 3 1_555 0.325 -0.191 0.356 -0.961 -7.885 2.573 34 E_DT10:DA15_F E 10 ? F 15 ? 20 1 1 E DG 11 1_555 F DC 2 1_555 0.101 -0.188 0.016 5.044 -3.673 0.295 35 E_DG11:DC14_F E 11 ? F 14 ? 19 1 1 E DC 12 1_555 F DG 1 1_555 0.490 -0.762 -0.114 -0.955 -7.112 -4.144 36 E_DC12:DG13_F E 12 ? F 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 12 1_555 A DC 2 1_555 B DG 11 1_555 -0.543 -0.342 3.416 1.699 1.036 29.517 -0.898 1.437 3.367 2.030 -3.331 29.582 1 AA_DG1DC2:DG23DC24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DC 2 1_555 B DG 11 1_555 A DA 3 1_555 B DT 10 1_555 -0.022 1.489 3.201 -2.225 1.779 45.694 1.762 -0.162 3.252 2.289 2.862 45.778 2 AA_DC2DA3:DT22DG23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DA 3 1_555 B DT 10 1_555 A DG 4 1_555 B DC 9 1_555 1.108 0.622 3.290 2.197 0.595 31.083 1.042 -1.635 3.369 1.109 -4.093 31.164 3 AA_DA3DG4:DC21DT22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.676 0.300 3.402 2.149 2.557 39.387 0.132 1.261 3.374 3.786 -3.181 39.522 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DC 6 1_555 B DG 7 1_555 0.889 -0.537 3.346 -0.794 1.135 23.633 -1.692 -2.435 3.285 2.769 1.937 23.673 5 AA_DA5DC6:DG19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DC 6 1_555 B DG 7 1_555 A DG 7 1_555 B DC 6 1_555 -0.407 -0.340 3.579 -0.614 1.032 43.977 -0.561 0.480 3.576 1.378 0.820 43.993 6 AA_DC6DG7:DC18DG19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DG 7 1_555 B DC 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.045 -0.920 3.372 0.944 -0.159 31.557 -1.661 0.264 3.374 -0.292 -1.735 31.571 7 AA_DG7DT8:DA17DC18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.122 0.049 3.351 0.095 5.387 43.428 -0.462 -0.154 3.334 7.246 -0.128 43.745 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DT 10 1_555 B DA 3 1_555 -1.192 0.232 2.920 0.794 -2.702 21.137 1.603 3.508 2.823 -7.324 -2.152 21.321 9 AA_DC9DT10:DA15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DT 10 1_555 B DA 3 1_555 A DG 11 1_555 B DC 2 1_555 0.971 0.987 3.329 1.574 1.998 52.933 0.974 -0.984 3.387 2.240 -1.765 52.990 10 AA_DT10DG11:DC14DA15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DG 11 1_555 B DC 2 1_555 A DC 12 1_555 B DG 1 1_555 -0.197 0.179 3.116 3.621 2.867 26.927 -0.299 1.275 3.065 6.100 -7.705 27.313 11 AA_DG11DC12:DG13DC14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 C DG 1 1_555 D DC 12 1_555 C DC 2 1_555 D DG 11 1_555 0.102 0.213 3.276 -1.276 -3.907 39.893 0.755 -0.294 3.237 -5.708 1.864 40.096 12 CC_DG1DC2:DG23DC24_DD C 1 ? D 24 ? C 2 ? D 23 ? 1 C DC 2 1_555 D DG 11 1_555 C DA 3 1_555 D DT 10 1_555 -0.418 0.296 3.333 0.034 6.714 33.791 -0.574 0.711 3.328 11.411 -0.058 34.433 13 CC_DC2DA3:DT22DG23_DD C 2 ? D 23 ? C 3 ? D 22 ? 1 C DA 3 1_555 D DT 10 1_555 C DG 4 1_555 D DC 9 1_555 0.707 0.280 3.133 0.048 0.146 31.185 0.494 -1.307 3.135 0.271 -0.089 31.185 14 CC_DA3DG4:DC21DT22_DD C 3 ? D 22 ? C 4 ? D 21 ? 1 C DG 4 1_555 D DC 9 1_555 C DA 5 1_555 D DT 8 1_555 -0.374 0.200 3.322 1.504 -0.205 34.636 0.367 0.862 3.302 -0.344 -2.525 34.669 15 CC_DG4DA5:DT20DC21_DD C 4 ? D 21 ? C 5 ? D 20 ? 1 C DA 5 1_555 D DT 8 1_555 C DC 6 1_555 D DG 7 1_555 0.706 -0.821 3.355 2.300 2.835 30.355 -2.131 -0.873 3.310 5.390 -4.372 30.569 16 CC_DA5DC6:DG19DT20_DD C 5 ? D 20 ? C 6 ? D 19 ? 1 C DC 6 1_555 D DG 7 1_555 C DG 7 1_555 D DC 6 1_555 -0.081 -0.444 3.787 -2.834 2.334 41.144 -0.919 -0.236 3.754 3.314 4.023 41.300 17 CC_DC6DG7:DC18DG19_DD C 6 ? D 19 ? C 7 ? D 18 ? 1 C DG 7 1_555 D DC 6 1_555 C DT 8 1_555 D DA 5 1_555 -0.783 -0.575 3.172 0.043 1.893 29.275 -1.528 1.555 3.128 3.740 -0.086 29.335 18 CC_DG7DT8:DA17DC18_DD C 7 ? D 18 ? C 8 ? D 17 ? 1 C DT 8 1_555 D DA 5 1_555 C DC 9 1_555 D DG 4 1_555 0.280 -0.760 3.240 0.259 -3.353 39.233 -0.731 -0.385 3.293 -4.983 -0.385 39.371 19 CC_DT8DC9:DG16DA17_DD C 8 ? D 17 ? C 9 ? D 16 ? 1 C DC 9 1_555 D DG 4 1_555 C DT 10 1_555 D DA 3 1_555 -0.274 0.203 3.076 2.398 7.576 32.921 -0.807 0.836 3.020 13.132 -4.156 33.841 20 CC_DC9DT10:DA15DG16_DD C 9 ? D 16 ? C 10 ? D 15 ? 1 C DT 10 1_555 D DA 3 1_555 C DG 11 1_555 D DC 2 1_555 0.000 1.359 3.143 -0.510 -2.264 43.940 2.017 -0.046 3.073 -3.023 0.681 43.998 21 CC_DT10DG11:DC14DA15_DD C 10 ? D 15 ? C 11 ? D 14 ? 1 C DG 11 1_555 D DC 2 1_555 C DC 12 1_555 D DG 1 1_555 0.034 -0.403 3.338 0.642 -0.123 31.452 -0.719 0.059 3.340 -0.228 -1.184 31.458 22 CC_DG11DC12:DG13DC14_DD C 11 ? D 14 ? C 12 ? D 13 ? 1 E DG 1 1_555 F DC 12 1_555 E DC 2 1_555 F DG 11 1_555 0.021 0.056 3.305 3.101 8.405 35.479 -1.085 0.400 3.225 13.528 -4.991 36.557 23 EE_DG1DC2:DG23DC24_FF E 1 ? F 24 ? E 2 ? F 23 ? 1 E DC 2 1_555 F DG 11 1_555 E DA 3 1_555 F DT 10 1_555 -1.066 1.488 3.115 -3.800 -1.315 44.274 2.084 1.072 3.148 -1.740 5.030 44.447 24 EE_DC2DA3:DT22DG23_FF E 2 ? F 23 ? E 3 ? F 22 ? 1 E DA 3 1_555 F DT 10 1_555 E DG 4 1_555 F DC 9 1_555 0.422 -0.135 3.090 -6.098 -0.069 36.046 -0.206 -1.460 2.982 -0.110 9.768 36.542 25 EE_DA3DG4:DC21DT22_FF E 3 ? F 22 ? E 4 ? F 21 ? 1 E DG 4 1_555 F DC 9 1_555 E DA 5 1_555 F DT 8 1_555 -0.261 -0.036 3.673 4.283 1.419 37.165 -0.265 1.035 3.618 2.216 -6.690 37.428 26 EE_DG4DA5:DT20DC21_FF E 4 ? F 21 ? E 5 ? F 20 ? 1 E DA 5 1_555 F DT 8 1_555 E DC 6 1_555 F DG 7 1_555 0.712 -0.413 3.135 -3.582 -2.275 27.332 -0.340 -2.315 3.042 -4.777 7.522 27.653 27 EE_DA5DC6:DG19DT20_FF E 5 ? F 20 ? E 6 ? F 19 ? 1 E DC 6 1_555 F DG 7 1_555 E DG 7 1_555 F DC 6 1_555 -0.339 -0.043 3.496 -0.433 5.717 39.462 -0.769 0.444 3.460 8.413 0.637 39.860 28 EE_DC6DG7:DC18DG19_FF E 6 ? F 19 ? E 7 ? F 18 ? 1 E DG 7 1_555 F DC 6 1_555 E DT 8 1_555 F DA 5 1_555 -0.864 -1.084 3.367 -2.183 1.967 31.785 -2.339 1.163 3.346 3.582 3.974 31.917 29 EE_DG7DT8:DA17DC18_FF E 7 ? F 18 ? E 8 ? F 17 ? 1 E DT 8 1_555 F DA 5 1_555 E DC 9 1_555 F DG 4 1_555 0.921 -0.042 3.283 -1.227 -3.938 46.120 0.281 -1.276 3.252 -5.015 1.563 46.294 30 EE_DT8DC9:DG16DA17_FF E 8 ? F 17 ? E 9 ? F 16 ? 1 E DC 9 1_555 F DG 4 1_555 E DT 10 1_555 F DA 3 1_555 -0.380 -0.028 3.118 -0.028 2.568 27.874 -0.637 0.779 3.104 5.317 0.059 27.989 31 EE_DC9DT10:DA15DG16_FF E 9 ? F 16 ? E 10 ? F 15 ? 1 E DT 10 1_555 F DA 3 1_555 E DG 11 1_555 F DC 2 1_555 -0.050 1.646 3.298 1.537 -0.330 40.138 2.434 0.248 3.281 -0.480 -2.238 40.168 32 EE_DT10DG11:DC14DA15_FF E 10 ? F 15 ? E 11 ? F 14 ? 1 E DG 11 1_555 F DC 2 1_555 E DC 12 1_555 F DG 1 1_555 -0.198 0.114 3.491 1.159 0.165 31.921 0.176 0.584 3.483 0.300 -2.106 31.942 33 EE_DG11DC12:DG13DC14_FF E 11 ? F 14 ? E 12 ? F 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT HEXAMMINE(III)' NCO 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 423D _pdbx_initial_refinement_model.details 'NDB ID BD0001 (PDB ID 423D)' #