data_2BF8 # _entry.id 2BF8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2BF8 pdb_00002bf8 10.2210/pdb2bf8/pdb PDBE EBI-21807 ? ? WWPDB D_1290021807 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1A5R unspecified 'STRUCTURE DETERMINATION OF THE SMALL UBIQUITIN -RELATED MODIFIER SUMO-1, NMR, 10 STRUCTURES' PDB 1TGZ unspecified 'STRUCTURE OF HUMAN SENP2 IN COMPLEX WITH SUMO-1' PDB 2BEP unspecified 'CRYSTAL STRUCTURE OF UBIQUITIN CONJUGATING ENZYME E2-25K' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BF8 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2004-12-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pichler, A.' 1 'Knipscheer, P.' 2 'Oberhofer, E.' 3 'Van Dijk, W.J.' 4 'Korner, R.' 5 'Velgaard Olsen, J.' 6 'Jentsch, S.' 7 'Melchior, F.' 8 'Sixma, T.K.' 9 # _citation.id primary _citation.title 'Sumo Imodification of the Ubiquitin Conjugating Enzyme E2-25K' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 12 _citation.page_first 264 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15723079 _citation.pdbx_database_id_DOI 10.1038/NSMB903 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pichler, A.' 1 ? primary 'Knipscheer, P.' 2 ? primary 'Oberhofer, E.' 3 ? primary 'Van Dijk, W.J.' 4 ? primary 'Korner, R.' 5 ? primary 'Velgaard Olsen, J.' 6 ? primary 'Jentsch, S.' 7 ? primary 'Melchior, F.' 8 ? primary 'Sixma, T.K.' 9 ? # _cell.entry_id 2BF8 _cell.length_a 58.391 _cell.length_b 58.391 _cell.length_c 162.842 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BF8 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UBIQUITIN-CONJUGATING ENZYME E2-25 KDA' 17846.412 1 6.3.2.19 ? 'CONSERVED CORE DOMAIN, RESIDUES 1-154' 'COVALENT ISOPEPTIDE LINK BETWEEN E2-25K LYSINE 14 AND SUMO C-TERMINUS' 2 polymer man 'UBIQUITIN-LIKE PROTEIN SMT3C' 8970.248 1 ? ? 'RESIDUES 21-97' 'COVALENT ISOPEPTIDE LINK BETWEEN E2-25K LYSINE 14 AND SUMO C-TERMINUS' 3 water nat water 18.015 83 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'E2-25K, UBIQUITIN-PROTEIN LIGASE, UBIQUITIN CARRIER PROTEIN, E2(25K), HUNTINGTIN INTERACTING PROTEIN 2, HIP-2' 2 ;SUMO, UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1, UBIQUITIN-LIKE PROTEIN UBL1, UBIQUITIN-RELATED PROTEIN SUMO-1, GAP MODIFYING PROTEIN 1, GMP1, SENTRIN ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GAMAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA ; ;GAMAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA ; A ? 2 'polypeptide(L)' no no YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ALA n 1 5 MET n 1 6 ALA n 1 7 ASN n 1 8 ILE n 1 9 ALA n 1 10 VAL n 1 11 GLN n 1 12 ARG n 1 13 ILE n 1 14 LYS n 1 15 ARG n 1 16 GLU n 1 17 PHE n 1 18 LYS n 1 19 GLU n 1 20 VAL n 1 21 LEU n 1 22 LYS n 1 23 SER n 1 24 GLU n 1 25 GLU n 1 26 THR n 1 27 SER n 1 28 LYS n 1 29 ASN n 1 30 GLN n 1 31 ILE n 1 32 LYS n 1 33 VAL n 1 34 ASP n 1 35 LEU n 1 36 VAL n 1 37 ASP n 1 38 GLU n 1 39 ASN n 1 40 PHE n 1 41 THR n 1 42 GLU n 1 43 LEU n 1 44 ARG n 1 45 GLY n 1 46 GLU n 1 47 ILE n 1 48 ALA n 1 49 GLY n 1 50 PRO n 1 51 PRO n 1 52 ASP n 1 53 THR n 1 54 PRO n 1 55 TYR n 1 56 GLU n 1 57 GLY n 1 58 GLY n 1 59 ARG n 1 60 TYR n 1 61 GLN n 1 62 LEU n 1 63 GLU n 1 64 ILE n 1 65 LYS n 1 66 ILE n 1 67 PRO n 1 68 GLU n 1 69 THR n 1 70 TYR n 1 71 PRO n 1 72 PHE n 1 73 ASN n 1 74 PRO n 1 75 PRO n 1 76 LYS n 1 77 VAL n 1 78 ARG n 1 79 PHE n 1 80 ILE n 1 81 THR n 1 82 LYS n 1 83 ILE n 1 84 TRP n 1 85 HIS n 1 86 PRO n 1 87 ASN n 1 88 ILE n 1 89 SER n 1 90 SER n 1 91 VAL n 1 92 THR n 1 93 GLY n 1 94 ALA n 1 95 ILE n 1 96 CYS n 1 97 LEU n 1 98 ASP n 1 99 ILE n 1 100 LEU n 1 101 LYS n 1 102 ASP n 1 103 GLN n 1 104 TRP n 1 105 ALA n 1 106 ALA n 1 107 ALA n 1 108 MET n 1 109 THR n 1 110 LEU n 1 111 ARG n 1 112 THR n 1 113 VAL n 1 114 LEU n 1 115 LEU n 1 116 SER n 1 117 LEU n 1 118 GLN n 1 119 ALA n 1 120 LEU n 1 121 LEU n 1 122 ALA n 1 123 ALA n 1 124 ALA n 1 125 GLU n 1 126 PRO n 1 127 ASP n 1 128 ASP n 1 129 PRO n 1 130 GLN n 1 131 ASP n 1 132 ALA n 1 133 VAL n 1 134 VAL n 1 135 ALA n 1 136 ASN n 1 137 GLN n 1 138 TYR n 1 139 LYS n 1 140 GLN n 1 141 ASN n 1 142 PRO n 1 143 GLU n 1 144 MET n 1 145 PHE n 1 146 LYS n 1 147 GLN n 1 148 THR n 1 149 ALA n 1 150 ARG n 1 151 LEU n 1 152 TRP n 1 153 ALA n 1 154 HIS n 1 155 VAL n 1 156 TYR n 1 157 ALA n 1 158 GLY n 1 159 ALA n 2 1 TYR n 2 2 ILE n 2 3 LYS n 2 4 LEU n 2 5 LYS n 2 6 VAL n 2 7 ILE n 2 8 GLY n 2 9 GLN n 2 10 ASP n 2 11 SER n 2 12 SER n 2 13 GLU n 2 14 ILE n 2 15 HIS n 2 16 PHE n 2 17 LYS n 2 18 VAL n 2 19 LYS n 2 20 MET n 2 21 THR n 2 22 THR n 2 23 HIS n 2 24 LEU n 2 25 LYS n 2 26 LYS n 2 27 LEU n 2 28 LYS n 2 29 GLU n 2 30 SER n 2 31 TYR n 2 32 CYS n 2 33 GLN n 2 34 ARG n 2 35 GLN n 2 36 GLY n 2 37 VAL n 2 38 PRO n 2 39 MET n 2 40 ASN n 2 41 SER n 2 42 LEU n 2 43 ARG n 2 44 PHE n 2 45 LEU n 2 46 PHE n 2 47 GLU n 2 48 GLY n 2 49 GLN n 2 50 ARG n 2 51 ILE n 2 52 ALA n 2 53 ASP n 2 54 ASN n 2 55 HIS n 2 56 THR n 2 57 PRO n 2 58 LYS n 2 59 GLU n 2 60 LEU n 2 61 GLY n 2 62 MET n 2 63 GLU n 2 64 GLU n 2 65 GLU n 2 66 ASP n 2 67 VAL n 2 68 ILE n 2 69 GLU n 2 70 VAL n 2 71 TYR n 2 72 GLN n 2 73 GLU n 2 74 GLN n 2 75 THR n 2 76 GLY n 2 77 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? BOVINE ? ? ? ? ? ? ? ? 'BOS TAURUS' 9913 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? PETM30 ? ? ? ? ? 2 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? PET11A ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2BF8 1 ? ? 2BF8 ? 2 UNP UBC1_BOVIN 1 ? ? P61085 ? 3 UNP SM33_HUMAN 2 ? ? P63165 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BF8 A 1 ? 5 ? 2BF8 -3 ? 1 ? -3 1 2 2 2BF8 A 6 ? 159 ? P61085 1 ? 154 ? 2 155 3 3 2BF8 B 1 ? 77 ? P63165 21 ? 97 ? 21 97 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BF8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 20 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 48.2 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100 MM TRIS PH 8.5 200 MM MAGNESIUM CHLORIDE 17% PEG 4000 10 % GLYCEROL' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type 'ADSC ADSC Q4R' _diffrn_detector.pdbx_collection_date 2003-09-07 _diffrn_detector.details 'TOROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL, SI(111), SI(311)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.939 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.939 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2BF8 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.300 _reflns.number_obs 13257 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.07000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 30.6000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.400 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.42 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.53000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.800 _reflns_shell.pdbx_redundancy 13.00 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2BF8 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 12545 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 55.05 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.6 _refine.ls_R_factor_obs 0.213 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.210 _refine.ls_R_factor_R_free 0.279 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 651 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.910 _refine.B_iso_mean 53.66 _refine.aniso_B[1][1] -2.04000 _refine.aniso_B[2][2] -2.04000 _refine.aniso_B[3][3] 4.07000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1FZY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.315 _refine.pdbx_overall_ESU_R_Free 0.258 _refine.overall_SU_ML 0.217 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 17.029 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1853 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 83 _refine_hist.number_atoms_total 1936 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 55.05 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1905 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1729 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.640 1.948 ? 2577 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.927 3.000 ? 4052 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.276 5.000 ? 231 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.697 25.055 ? 91 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.644 15.000 ? 347 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.630 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.095 0.200 ? 283 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 2095 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 360 'X-RAY DIFFRACTION' ? r_nbd_refined 0.198 0.200 ? 403 'X-RAY DIFFRACTION' ? r_nbd_other 0.190 0.200 ? 1782 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.183 0.200 ? 900 'X-RAY DIFFRACTION' ? r_nbtor_other 0.089 0.200 ? 1064 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.165 0.200 ? 91 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.075 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.272 0.200 ? 27 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.319 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.813 1.500 ? 1512 'X-RAY DIFFRACTION' ? r_mcbond_other 0.173 1.500 ? 467 'X-RAY DIFFRACTION' ? r_mcangle_it 0.979 2.000 ? 1884 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.755 3.000 ? 866 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.496 4.500 ? 693 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.36 _refine_ls_shell.number_reflns_R_work 871 _refine_ls_shell.R_factor_R_work 0.2930 _refine_ls_shell.percent_reflns_obs 98.51 _refine_ls_shell.R_factor_R_free 0.4110 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2BF8 _struct.title 'Crystal structure of SUMO modified ubiquitin conjugating enzyme E2- 25K' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BF8 _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;LIGASE-COMPLEX, E2-25K, E2 UBIQUITIN CONJUGATING ENZYME, SUMO, SUMO-TARGET STRUCTURE, LIGASE, STRUCTURAL PROTEOMICS IN EUROPE, SPINE, STRUCTURAL GENOMICS ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 6 ? LYS A 22 ? ALA A 2 LYS A 18 1 ? 17 HELX_P HELX_P2 2 SER A 23 ? LYS A 28 ? SER A 19 LYS A 24 1 ? 6 HELX_P HELX_P3 3 LEU A 97 ? LYS A 101 ? LEU A 93 LYS A 97 5 ? 5 HELX_P HELX_P4 4 THR A 109 ? ALA A 123 ? THR A 105 ALA A 119 1 ? 15 HELX_P HELX_P5 5 ASP A 131 ? ASN A 141 ? ASP A 127 ASN A 137 1 ? 11 HELX_P HELX_P6 6 ASN A 141 ? TYR A 156 ? ASN A 137 TYR A 152 1 ? 16 HELX_P HELX_P7 7 LEU B 24 ? GLN B 35 ? LEU B 44 GLN B 55 1 ? 12 HELX_P HELX_P8 8 LYS B 58 ? MET B 62 ? LYS B 78 MET B 82 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 70 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 66 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 71 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 67 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.19 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? BA ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? parallel BA 3 4 ? anti-parallel BA 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 31 ? LEU A 35 ? ILE A 27 LEU A 31 AA 2 GLU A 42 ? ALA A 48 ? GLU A 38 ALA A 44 AA 3 ARG A 59 ? LYS A 65 ? ARG A 55 LYS A 61 AA 4 LYS A 76 ? PHE A 79 ? LYS A 72 PHE A 75 BA 1 GLU B 13 ? VAL B 18 ? GLU B 33 VAL B 38 BA 2 ILE B 2 ? ILE B 7 ? ILE B 22 ILE B 27 BA 3 ASP B 66 ? GLN B 72 ? ASP B 86 GLN B 92 BA 4 LEU B 42 ? PHE B 46 ? LEU B 62 PHE B 66 BA 5 GLN B 49 ? ARG B 50 ? GLN B 69 ARG B 70 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ASP A 34 ? N ASP A 30 O ARG A 44 ? O ARG A 40 AA 2 3 N ILE A 47 ? N ILE A 43 O TYR A 60 ? O TYR A 56 AA 3 4 N LYS A 65 ? N LYS A 61 O LYS A 76 ? O LYS A 72 BA 1 2 N VAL B 18 ? N VAL B 38 O ILE B 2 ? O ILE B 22 BA 2 3 N LYS B 5 ? N LYS B 25 O ASP B 66 ? O ASP B 86 BA 3 4 N TYR B 71 ? N TYR B 91 O ARG B 43 ? O ARG B 63 BA 4 5 N PHE B 46 ? N PHE B 66 O GLN B 49 ? O GLN B 69 # _database_PDB_matrix.entry_id 2BF8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BF8 _atom_sites.fract_transf_matrix[1][1] 0.017126 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017126 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006141 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 ALA 2 -2 ? ? ? A . n A 1 3 MET 3 -1 ? ? ? A . n A 1 4 ALA 4 0 ? ? ? A . n A 1 5 MET 5 1 ? ? ? A . n A 1 6 ALA 6 2 2 ALA ALA A . n A 1 7 ASN 7 3 3 ASN ASN A . n A 1 8 ILE 8 4 4 ILE ILE A . n A 1 9 ALA 9 5 5 ALA ALA A . n A 1 10 VAL 10 6 6 VAL VAL A . n A 1 11 GLN 11 7 7 GLN GLN A . n A 1 12 ARG 12 8 8 ARG ARG A . n A 1 13 ILE 13 9 9 ILE ILE A . n A 1 14 LYS 14 10 10 LYS LYS A . n A 1 15 ARG 15 11 11 ARG ARG A . n A 1 16 GLU 16 12 12 GLU GLU A . n A 1 17 PHE 17 13 13 PHE PHE A . n A 1 18 LYS 18 14 14 LYS LYS A . n A 1 19 GLU 19 15 15 GLU GLU A . n A 1 20 VAL 20 16 16 VAL VAL A . n A 1 21 LEU 21 17 17 LEU LEU A . n A 1 22 LYS 22 18 18 LYS LYS A . n A 1 23 SER 23 19 19 SER SER A . n A 1 24 GLU 24 20 20 GLU GLU A . n A 1 25 GLU 25 21 21 GLU GLU A . n A 1 26 THR 26 22 22 THR THR A . n A 1 27 SER 27 23 23 SER SER A . n A 1 28 LYS 28 24 24 LYS LYS A . n A 1 29 ASN 29 25 25 ASN ASN A . n A 1 30 GLN 30 26 26 GLN GLN A . n A 1 31 ILE 31 27 27 ILE ILE A . n A 1 32 LYS 32 28 28 LYS LYS A . n A 1 33 VAL 33 29 29 VAL VAL A . n A 1 34 ASP 34 30 30 ASP ASP A . n A 1 35 LEU 35 31 31 LEU LEU A . n A 1 36 VAL 36 32 32 VAL VAL A . n A 1 37 ASP 37 33 33 ASP ASP A . n A 1 38 GLU 38 34 34 GLU GLU A . n A 1 39 ASN 39 35 35 ASN ASN A . n A 1 40 PHE 40 36 36 PHE PHE A . n A 1 41 THR 41 37 37 THR THR A . n A 1 42 GLU 42 38 38 GLU GLU A . n A 1 43 LEU 43 39 39 LEU LEU A . n A 1 44 ARG 44 40 40 ARG ARG A . n A 1 45 GLY 45 41 41 GLY GLY A . n A 1 46 GLU 46 42 42 GLU GLU A . n A 1 47 ILE 47 43 43 ILE ILE A . n A 1 48 ALA 48 44 44 ALA ALA A . n A 1 49 GLY 49 45 45 GLY GLY A . n A 1 50 PRO 50 46 46 PRO PRO A . n A 1 51 PRO 51 47 47 PRO PRO A . n A 1 52 ASP 52 48 48 ASP ASP A . n A 1 53 THR 53 49 49 THR THR A . n A 1 54 PRO 54 50 50 PRO PRO A . n A 1 55 TYR 55 51 51 TYR TYR A . n A 1 56 GLU 56 52 52 GLU GLU A . n A 1 57 GLY 57 53 53 GLY GLY A . n A 1 58 GLY 58 54 54 GLY GLY A . n A 1 59 ARG 59 55 55 ARG ARG A . n A 1 60 TYR 60 56 56 TYR TYR A . n A 1 61 GLN 61 57 57 GLN GLN A . n A 1 62 LEU 62 58 58 LEU LEU A . n A 1 63 GLU 63 59 59 GLU GLU A . n A 1 64 ILE 64 60 60 ILE ILE A . n A 1 65 LYS 65 61 61 LYS LYS A . n A 1 66 ILE 66 62 62 ILE ILE A . n A 1 67 PRO 67 63 63 PRO PRO A . n A 1 68 GLU 68 64 64 GLU GLU A . n A 1 69 THR 69 65 65 THR THR A . n A 1 70 TYR 70 66 66 TYR TYR A . n A 1 71 PRO 71 67 67 PRO PRO A . n A 1 72 PHE 72 68 68 PHE PHE A . n A 1 73 ASN 73 69 69 ASN ASN A . n A 1 74 PRO 74 70 70 PRO PRO A . n A 1 75 PRO 75 71 71 PRO PRO A . n A 1 76 LYS 76 72 72 LYS LYS A . n A 1 77 VAL 77 73 73 VAL VAL A . n A 1 78 ARG 78 74 74 ARG ARG A . n A 1 79 PHE 79 75 75 PHE PHE A . n A 1 80 ILE 80 76 76 ILE ILE A . n A 1 81 THR 81 77 77 THR THR A . n A 1 82 LYS 82 78 78 LYS LYS A . n A 1 83 ILE 83 79 79 ILE ILE A . n A 1 84 TRP 84 80 80 TRP TRP A . n A 1 85 HIS 85 81 81 HIS HIS A . n A 1 86 PRO 86 82 82 PRO PRO A . n A 1 87 ASN 87 83 83 ASN ASN A . n A 1 88 ILE 88 84 84 ILE ILE A . n A 1 89 SER 89 85 85 SER SER A . n A 1 90 SER 90 86 86 SER SER A . n A 1 91 VAL 91 87 87 VAL VAL A . n A 1 92 THR 92 88 88 THR THR A . n A 1 93 GLY 93 89 89 GLY GLY A . n A 1 94 ALA 94 90 90 ALA ALA A . n A 1 95 ILE 95 91 91 ILE ILE A . n A 1 96 CYS 96 92 92 CYS CYS A . n A 1 97 LEU 97 93 93 LEU LEU A . n A 1 98 ASP 98 94 94 ASP ASP A . n A 1 99 ILE 99 95 95 ILE ILE A . n A 1 100 LEU 100 96 96 LEU LEU A . n A 1 101 LYS 101 97 97 LYS LYS A . n A 1 102 ASP 102 98 98 ASP ASP A . n A 1 103 GLN 103 99 99 GLN GLN A . n A 1 104 TRP 104 100 100 TRP TRP A . n A 1 105 ALA 105 101 101 ALA ALA A . n A 1 106 ALA 106 102 102 ALA ALA A . n A 1 107 ALA 107 103 103 ALA ALA A . n A 1 108 MET 108 104 104 MET MET A . n A 1 109 THR 109 105 105 THR THR A . n A 1 110 LEU 110 106 106 LEU LEU A . n A 1 111 ARG 111 107 107 ARG ARG A . n A 1 112 THR 112 108 108 THR THR A . n A 1 113 VAL 113 109 109 VAL VAL A . n A 1 114 LEU 114 110 110 LEU LEU A . n A 1 115 LEU 115 111 111 LEU LEU A . n A 1 116 SER 116 112 112 SER SER A . n A 1 117 LEU 117 113 113 LEU LEU A . n A 1 118 GLN 118 114 114 GLN GLN A . n A 1 119 ALA 119 115 115 ALA ALA A . n A 1 120 LEU 120 116 116 LEU LEU A . n A 1 121 LEU 121 117 117 LEU LEU A . n A 1 122 ALA 122 118 118 ALA ALA A . n A 1 123 ALA 123 119 119 ALA ALA A . n A 1 124 ALA 124 120 120 ALA ALA A . n A 1 125 GLU 125 121 121 GLU GLU A . n A 1 126 PRO 126 122 122 PRO PRO A . n A 1 127 ASP 127 123 123 ASP ASP A . n A 1 128 ASP 128 124 124 ASP ASP A . n A 1 129 PRO 129 125 125 PRO PRO A . n A 1 130 GLN 130 126 126 GLN GLN A . n A 1 131 ASP 131 127 127 ASP ASP A . n A 1 132 ALA 132 128 128 ALA ALA A . n A 1 133 VAL 133 129 129 VAL VAL A . n A 1 134 VAL 134 130 130 VAL VAL A . n A 1 135 ALA 135 131 131 ALA ALA A . n A 1 136 ASN 136 132 132 ASN ASN A . n A 1 137 GLN 137 133 133 GLN GLN A . n A 1 138 TYR 138 134 134 TYR TYR A . n A 1 139 LYS 139 135 135 LYS LYS A . n A 1 140 GLN 140 136 136 GLN GLN A . n A 1 141 ASN 141 137 137 ASN ASN A . n A 1 142 PRO 142 138 138 PRO PRO A . n A 1 143 GLU 143 139 139 GLU GLU A . n A 1 144 MET 144 140 140 MET MET A . n A 1 145 PHE 145 141 141 PHE PHE A . n A 1 146 LYS 146 142 142 LYS LYS A . n A 1 147 GLN 147 143 143 GLN GLN A . n A 1 148 THR 148 144 144 THR THR A . n A 1 149 ALA 149 145 145 ALA ALA A . n A 1 150 ARG 150 146 146 ARG ARG A . n A 1 151 LEU 151 147 147 LEU LEU A . n A 1 152 TRP 152 148 148 TRP TRP A . n A 1 153 ALA 153 149 149 ALA ALA A . n A 1 154 HIS 154 150 150 HIS HIS A . n A 1 155 VAL 155 151 151 VAL VAL A . n A 1 156 TYR 156 152 152 TYR TYR A . n A 1 157 ALA 157 153 153 ALA ALA A . n A 1 158 GLY 158 154 154 GLY GLY A . n A 1 159 ALA 159 155 155 ALA ALA A . n B 2 1 TYR 1 21 21 TYR TYR B . n B 2 2 ILE 2 22 22 ILE ILE B . n B 2 3 LYS 3 23 23 LYS LYS B . n B 2 4 LEU 4 24 24 LEU LEU B . n B 2 5 LYS 5 25 25 LYS LYS B . n B 2 6 VAL 6 26 26 VAL VAL B . n B 2 7 ILE 7 27 27 ILE ILE B . n B 2 8 GLY 8 28 28 GLY GLY B . n B 2 9 GLN 9 29 29 GLN GLN B . n B 2 10 ASP 10 30 30 ASP ASP B . n B 2 11 SER 11 31 31 SER SER B . n B 2 12 SER 12 32 32 SER SER B . n B 2 13 GLU 13 33 33 GLU GLU B . n B 2 14 ILE 14 34 34 ILE ILE B . n B 2 15 HIS 15 35 35 HIS HIS B . n B 2 16 PHE 16 36 36 PHE PHE B . n B 2 17 LYS 17 37 37 LYS LYS B . n B 2 18 VAL 18 38 38 VAL VAL B . n B 2 19 LYS 19 39 39 LYS LYS B . n B 2 20 MET 20 40 40 MET MET B . n B 2 21 THR 21 41 41 THR THR B . n B 2 22 THR 22 42 42 THR THR B . n B 2 23 HIS 23 43 43 HIS HIS B . n B 2 24 LEU 24 44 44 LEU LEU B . n B 2 25 LYS 25 45 45 LYS LYS B . n B 2 26 LYS 26 46 46 LYS LYS B . n B 2 27 LEU 27 47 47 LEU LEU B . n B 2 28 LYS 28 48 48 LYS LYS B . n B 2 29 GLU 29 49 49 GLU GLU B . n B 2 30 SER 30 50 50 SER SER B . n B 2 31 TYR 31 51 51 TYR TYR B . n B 2 32 CYS 32 52 52 CYS CYS B . n B 2 33 GLN 33 53 53 GLN GLN B . n B 2 34 ARG 34 54 54 ARG ARG B . n B 2 35 GLN 35 55 55 GLN GLN B . n B 2 36 GLY 36 56 56 GLY GLY B . n B 2 37 VAL 37 57 57 VAL VAL B . n B 2 38 PRO 38 58 58 PRO PRO B . n B 2 39 MET 39 59 59 MET MET B . n B 2 40 ASN 40 60 60 ASN ASN B . n B 2 41 SER 41 61 61 SER SER B . n B 2 42 LEU 42 62 62 LEU LEU B . n B 2 43 ARG 43 63 63 ARG ARG B . n B 2 44 PHE 44 64 64 PHE PHE B . n B 2 45 LEU 45 65 65 LEU LEU B . n B 2 46 PHE 46 66 66 PHE PHE B . n B 2 47 GLU 47 67 67 GLU GLU B . n B 2 48 GLY 48 68 68 GLY GLY B . n B 2 49 GLN 49 69 69 GLN GLN B . n B 2 50 ARG 50 70 70 ARG ARG B . n B 2 51 ILE 51 71 71 ILE ILE B . n B 2 52 ALA 52 72 72 ALA ALA B . n B 2 53 ASP 53 73 73 ASP ASP B . n B 2 54 ASN 54 74 74 ASN ASN B . n B 2 55 HIS 55 75 75 HIS HIS B . n B 2 56 THR 56 76 76 THR THR B . n B 2 57 PRO 57 77 77 PRO PRO B . n B 2 58 LYS 58 78 78 LYS LYS B . n B 2 59 GLU 59 79 79 GLU GLU B . n B 2 60 LEU 60 80 80 LEU LEU B . n B 2 61 GLY 61 81 81 GLY GLY B . n B 2 62 MET 62 82 82 MET MET B . n B 2 63 GLU 63 83 83 GLU GLU B . n B 2 64 GLU 64 84 84 GLU GLU B . n B 2 65 GLU 65 85 85 GLU GLU B . n B 2 66 ASP 66 86 86 ASP ASP B . n B 2 67 VAL 67 87 87 VAL VAL B . n B 2 68 ILE 68 88 88 ILE ILE B . n B 2 69 GLU 69 89 89 GLU GLU B . n B 2 70 VAL 70 90 90 VAL VAL B . n B 2 71 TYR 71 91 91 TYR TYR B . n B 2 72 GLN 72 92 92 GLN GLN B . n B 2 73 GLU 73 93 93 GLU GLU B . n B 2 74 GLN 74 94 94 GLN GLN B . n B 2 75 THR 75 95 95 THR THR B . n B 2 76 GLY 76 96 96 GLY GLY B . n B 2 77 GLY 77 97 97 GLY GLY B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . D 3 HOH 1 2001 2001 HOH HOH B . D 3 HOH 2 2002 2002 HOH HOH B . D 3 HOH 3 2003 2003 HOH HOH B . D 3 HOH 4 2004 2004 HOH HOH B . D 3 HOH 5 2005 2005 HOH HOH B . D 3 HOH 6 2006 2006 HOH HOH B . D 3 HOH 7 2007 2007 HOH HOH B . D 3 HOH 8 2008 2008 HOH HOH B . D 3 HOH 9 2009 2009 HOH HOH B . D 3 HOH 10 2010 2010 HOH HOH B . D 3 HOH 11 2011 2011 HOH HOH B . D 3 HOH 12 2012 2012 HOH HOH B . D 3 HOH 13 2013 2013 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' Other 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 40.1950 17.7830 69.7720 -0.1357 -0.2368 -0.2961 -0.1081 0.0391 -0.0434 3.5484 9.4825 3.3554 -1.0822 -1.9575 2.9418 0.0625 -0.0756 -0.0922 0.4331 -0.1307 -0.7976 0.3162 -0.1059 0.0682 'X-RAY DIFFRACTION' 2 ? refined 17.9910 52.2470 74.2110 0.3663 0.3577 0.1638 0.1206 0.0810 0.3002 4.7404 9.4991 8.4715 -4.0568 -2.5666 0.2981 0.7684 1.0786 1.1827 -0.7803 -0.4570 -0.4250 -1.6759 -0.7391 -0.3114 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 155 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 20 ? ? B 97 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_entry_details.entry_id 2BF8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;COVALENT ISOPEPTIDE BOND BETWEEN E2-25K LYSINE 14 AND SUMO C-TERMINUS ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NZ _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 14 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 C _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 GLY _pdbx_validate_close_contact.auth_seq_id_2 97 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.32 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ALA _pdbx_validate_symm_contact.auth_seq_id_1 119 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH1 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 54 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_556 _pdbx_validate_symm_contact.dist 2.11 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 30 ? ? CG A ASP 30 ? ? OD2 A ASP 30 ? ? 124.05 118.30 5.75 0.90 N 2 1 CB A ASP 48 ? ? CG A ASP 48 ? ? OD2 A ASP 48 ? ? 123.77 118.30 5.47 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 97 ? ? -124.09 -113.98 2 1 ALA A 119 ? ? -155.51 88.36 3 1 ASN A 137 ? ? -151.02 72.95 4 1 SER B 31 ? ? 93.73 17.97 5 1 THR B 41 ? ? -110.08 55.61 6 1 ASN B 60 ? ? 84.58 -8.44 7 1 LEU B 80 ? ? 66.72 -15.63 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A ALA -2 ? A ALA 2 3 1 Y 1 A MET -1 ? A MET 3 4 1 Y 1 A ALA 0 ? A ALA 4 5 1 Y 1 A MET 1 ? A MET 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FZY _pdbx_initial_refinement_model.details 'PDB ENTRY 1FZY' #