HEADER HYDROLASE 20-JAN-05 2BIB TITLE CRYSTAL STRUCTURE OF THE COMPLETE MODULAR TEICHIOIC ACID TITLE 2 PHOSPHORYLCHOLINE ESTERASE PCE (CBPE) FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TEICHOIC ACID PHOSPHORYLCHOLINE ESTERASE/ CHOLINE BINDING COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 26-572; COMPND 6 SYNONYM: CBPE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHOLINE-BINDING PROTEIN, CBPE, PCE, PHOSPHORYLCHOLINE ESTERASE, KEYWDS 2 HYDROLASE, TEICHOIC ACID EXPDTA X-RAY DIFFRACTION AUTHOR J.A.HERMOSO,L.LAGARTERA,A.GONZALEZ,P.GARCIA,M.MARTINEZ-RIPOLL, AUTHOR 2 J.L.GARCIA,M.MENENDEZ REVDAT 6 08-MAY-24 2BIB 1 LINK REVDAT 5 06-MAR-19 2BIB 1 REMARK REVDAT 4 13-JUL-11 2BIB 1 VERSN REVDAT 3 24-FEB-09 2BIB 1 VERSN REVDAT 2 03-JUN-05 2BIB 1 JRNL REVDAT 1 09-MAY-05 2BIB 0 JRNL AUTH J.A.HERMOSO,L.LAGARTERA,A.GONZALEZ,M.STELTER,P.GARCIA, JRNL AUTH 2 M.MARTINEZ-RIPOLL,J.L.GARCIA,M.MENENDEZ JRNL TITL INSIGHTS INTO PNEUMOCOCCAL PATHOGENESIS FROM CRYSTAL JRNL TITL 2 STRUCTURE OF THE MODULAR TEICHOIC ACID PHOSPHORYLCHOLINE JRNL TITL 3 ESTERASE PCE JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 533 2005 JRNL REFN ISSN 1545-9993 JRNL PMID 15895092 JRNL DOI 10.1038/NSMB940 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 44361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3368 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2944 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.321 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4687 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6324 ; 1.225 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 539 ; 5.608 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 624 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3592 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2042 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 406 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2690 ; 0.545 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4315 ; 1.002 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1997 ; 1.548 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2009 ; 2.379 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 127.9312 -7.1285 -14.7769 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.0191 REMARK 3 T33: 0.0358 T12: 0.0061 REMARK 3 T13: -0.0050 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.3257 L22: 0.3340 REMARK 3 L33: 0.4045 L12: 0.0019 REMARK 3 L13: 0.1372 L23: -0.0955 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.0396 S13: -0.0399 REMARK 3 S21: -0.0207 S22: -0.0078 S23: -0.0433 REMARK 3 S31: -0.0153 S32: 0.0150 S33: -0.0192 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 302 A 540 REMARK 3 ORIGIN FOR THE GROUP (A): 91.2129 11.2232 26.0513 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.0515 REMARK 3 T33: 0.0221 T12: 0.0247 REMARK 3 T13: 0.0133 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.1387 L22: 0.3391 REMARK 3 L33: 1.3196 L12: -0.2142 REMARK 3 L13: -0.4433 L23: 0.6935 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: 0.0426 S13: -0.0046 REMARK 3 S21: 0.0061 S22: -0.0456 S23: 0.0564 REMARK 3 S31: -0.0390 S32: -0.0819 S33: 0.0440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1290022552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418, 1.711 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44362 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 27.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: STRUCTURE WAS DETERMINED BY SAD USING A NO- ISOMORPHOUS GD REMARK 200 DERIVATIVE COLLECTED ON BEAMLINE BM30A AT ESRF. THIS MODEL WAS REMARK 200 THEN REFINED USING HIGH RESOLUTION IN- HOUSE NATIVE DATA SET. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE OBTAINED WITH 4 MICROL REMARK 280 OF RESERVOIR SOLUTION (17 % PEG 10000, 0.1 M BIS TRIS PH=5.5 AND REMARK 280 0.1 M AMMONIUM ACETATE), 1 MICROL. OF 1.5 MM N REMARK 280 DODECYLPHOSPHORYLCHOLINE, AND 4 MICROL. OF PROTEIN SOLUTION. AT REMARK 280 293 K, CRYSTALS REACHED MAXIMUM DIMENSIONS OF 0.1 X 0.3 X 0.3 REMARK 280 MM3 IN 15 30 DAYS., PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.74500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.74500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 542 REMARK 465 THR A 543 REMARK 465 ILE A 544 REMARK 465 LYS A 545 REMARK 465 THR A 546 REMARK 465 THR A 547 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 541 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 47 O HOH A 2041 2.00 REMARK 500 OG SER A 431 OE2 GLU A 433 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 89 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 295 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 449 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 527 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 83.59 -167.77 REMARK 500 ASP A 33 -176.35 73.89 REMARK 500 THR A 34 4.03 -151.41 REMARK 500 HIS A 90 -50.93 -121.60 REMARK 500 TRP A 123 -125.66 42.18 REMARK 500 ASP A 181 146.60 -170.37 REMARK 500 HIS A 229 -59.04 70.92 REMARK 500 HIS A 230 -3.33 -153.42 REMARK 500 ASN A 377 -168.62 54.82 REMARK 500 ASN A 389 -177.10 -69.95 REMARK 500 TYR A 421 -78.66 -98.33 REMARK 500 LYS A 442 -123.52 48.99 REMARK 500 ALA A 482 -123.68 54.58 REMARK 500 ASP A 527 -168.21 -78.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1551 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 36 OE2 REMARK 620 2 ASP A 37 OD1 88.6 REMARK 620 3 ASP A 37 O 87.4 70.5 REMARK 620 4 ASP A 39 O 173.1 84.5 90.2 REMARK 620 5 HOH A2056 O 103.4 137.3 69.3 81.7 REMARK 620 6 HOH A2127 O 98.4 75.6 145.5 79.9 140.0 REMARK 620 7 HOH A2128 O 91.3 143.4 146.1 94.2 78.1 68.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1552 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 37 OD2 REMARK 620 2 GLY A 92 O 80.3 REMARK 620 3 ASP A 95 OD1 166.9 95.2 REMARK 620 4 ASP A 95 OD2 144.8 134.6 42.2 REMARK 620 5 GLU A 96 OE1 115.2 76.5 75.2 77.1 REMARK 620 6 GLU A 96 OE2 87.2 114.5 105.8 74.8 52.2 REMARK 620 7 HOH A2030 O 91.7 162.6 89.2 56.0 120.8 80.2 REMARK 620 8 HOH A2081 O 81.0 74.9 86.0 108.9 144.0 163.5 88.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1550 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 NE2 REMARK 620 2 HIS A 87 ND1 91.6 REMARK 620 3 ASN A 183 OD1 91.7 88.4 REMARK 620 4 ASP A 203 OD1 91.1 155.8 115.5 REMARK 620 5 PC A1541 O4 178.1 88.4 90.2 88.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1549 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 89 OD2 REMARK 620 2 HIS A 90 NE2 94.2 REMARK 620 3 ASP A 203 OD1 150.4 76.3 REMARK 620 4 HIS A 229 NE2 88.4 106.2 121.0 REMARK 620 5 PC A1541 O3 87.4 150.5 87.8 103.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1549 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PC A1541 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A1542 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A1543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A1544 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A1545 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A1546 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A1547 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A1548 REMARK 999 REMARK 999 SEQUENCE REMARK 999 IN ORDER TO IMPROVE THE CRYSTALLIZATION PROCESS THE LAST REMARK 999 55 AMINO ACIDS OF THE C-TERMINAL TAIL WERE DELETED. THE REMARK 999 ACTIVITY OF THE TRUNCATED FORM (PCE-55) WAS SIMILAR TO REMARK 999 THAT OF THE WILD TYPE PROTEIN. DBREF 2BIB A 1 547 UNP Q8DQ62 Q8DQ62 26 572 SEQRES 1 A 547 GLN GLU SER SER GLY ASN LYS ILE HIS PHE ILE ASN VAL SEQRES 2 A 547 GLN GLU GLY GLY SER ASP ALA ILE ILE LEU GLU SER ASN SEQRES 3 A 547 GLY HIS PHE ALA MET VAL ASP THR GLY GLU ASP TYR ASP SEQRES 4 A 547 PHE PRO ASP GLY SER ASP SER ARG TYR PRO TRP ARG GLU SEQRES 5 A 547 GLY ILE GLU THR SER TYR LYS HIS VAL LEU THR ASP ARG SEQRES 6 A 547 VAL PHE ARG ARG LEU LYS GLU LEU SER VAL GLN LYS LEU SEQRES 7 A 547 ASP PHE ILE LEU VAL THR HIS THR HIS SER ASP HIS ILE SEQRES 8 A 547 GLY ASN VAL ASP GLU LEU LEU SER THR TYR PRO VAL ASP SEQRES 9 A 547 ARG VAL TYR LEU LYS LYS TYR SER ASP SER ARG ILE THR SEQRES 10 A 547 ASN SER GLU ARG LEU TRP ASP ASN LEU TYR GLY TYR ASP SEQRES 11 A 547 LYS VAL LEU GLN THR ALA THR GLU THR GLY VAL SER VAL SEQRES 12 A 547 ILE GLN ASN ILE THR GLN GLY ASP ALA HIS PHE GLN PHE SEQRES 13 A 547 GLY ASP MET ASP ILE GLN LEU TYR ASN TYR GLU ASN GLU SEQRES 14 A 547 THR ASP SER SER GLY GLU LEU LYS LYS ILE TRP ASP ASP SEQRES 15 A 547 ASN SER ASN SER LEU ILE SER VAL VAL LYS VAL ASN GLY SEQRES 16 A 547 LYS LYS ILE TYR LEU GLY GLY ASP LEU ASP ASN VAL HIS SEQRES 17 A 547 GLY ALA GLU ASP LYS TYR GLY PRO LEU ILE GLY LYS VAL SEQRES 18 A 547 ASP LEU MET LYS PHE ASN HIS HIS HIS ASP THR ASN LYS SEQRES 19 A 547 SER ASN THR LYS ASP PHE ILE LYS ASN LEU SER PRO SER SEQRES 20 A 547 LEU ILE VAL GLN THR SER ASP SER LEU PRO TRP LYS ASN SEQRES 21 A 547 GLY VAL ASP SER GLU TYR VAL ASN TRP LEU LYS GLU ARG SEQRES 22 A 547 GLY ILE GLU ARG ILE ASN ALA ALA SER LYS ASP TYR ASP SEQRES 23 A 547 ALA THR VAL PHE ASP ILE ARG LYS ASP GLY PHE VAL ASN SEQRES 24 A 547 ILE SER THR SER TYR LYS PRO ILE PRO SER PHE GLN ALA SEQRES 25 A 547 GLY TRP HIS LYS SER ALA TYR GLY ASN TRP TRP TYR GLN SEQRES 26 A 547 ALA PRO ASP SER THR GLY GLU TYR ALA VAL GLY TRP ASN SEQRES 27 A 547 GLU ILE GLU GLY GLU TRP TYR TYR PHE ASN GLN THR GLY SEQRES 28 A 547 ILE LEU LEU GLN ASN GLN TRP LYS LYS TRP ASN ASN HIS SEQRES 29 A 547 TRP PHE TYR LEU THR ASP SER GLY ALA SER ALA LYS ASN SEQRES 30 A 547 TRP LYS LYS ILE ASP GLY ILE TRP TYR TYR PHE ASN LYS SEQRES 31 A 547 GLU ASN GLN MET GLU ILE GLY TRP VAL GLN ASP LYS GLU SEQRES 32 A 547 GLN TRP TYR TYR LEU ASP VAL ASP GLY SER MET LYS THR SEQRES 33 A 547 GLY TRP LEU GLN TYR MET GLY GLN TRP TYR TYR PHE ALA SEQRES 34 A 547 PRO SER GLY GLU MET LYS MET GLY TRP VAL LYS ASP LYS SEQRES 35 A 547 GLU THR TRP TYR TYR MET ASP SER THR GLY VAL MET LYS SEQRES 36 A 547 THR GLY GLU ILE GLU VAL ALA GLY GLN HIS TYR TYR LEU SEQRES 37 A 547 GLU ASP SER GLY ALA MET LYS GLN GLY TRP HIS LYS LYS SEQRES 38 A 547 ALA ASN ASP TRP TYR PHE TYR LYS THR ASP GLY SER ARG SEQRES 39 A 547 ALA VAL GLY TRP ILE LYS ASP LYS ASP LYS TRP TYR PHE SEQRES 40 A 547 LEU LYS GLU ASN GLY GLN LEU LEU VAL ASN GLY LYS THR SEQRES 41 A 547 PRO GLU GLY TYR THR VAL ASP SER SER GLY ALA TRP LEU SEQRES 42 A 547 VAL ASP VAL SER ILE GLU LYS SER ALA THR ILE LYS THR SEQRES 43 A 547 THR HET PC A1541 11 HET BTB A1542 14 HET BTB A1543 14 HET BTB A1544 14 HET BTB A1545 14 HET BTB A1546 14 HET BTB A1547 14 HET BTB A1548 14 HET ZN A1549 1 HET ZN A1550 1 HET CA A1551 1 HET CA A1552 1 HETNAM PC PHOSPHOCHOLINE HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETSYN BTB BIS-TRIS BUFFER FORMUL 2 PC C5 H15 N O4 P 1+ FORMUL 3 BTB 7(C8 H19 N O5) FORMUL 10 ZN 2(ZN 2+) FORMUL 12 CA 2(CA 2+) FORMUL 14 HOH *432(H2 O) HELIX 1 1 SER A 57 VAL A 61 5 5 HELIX 2 2 LEU A 62 LEU A 73 1 12 HELIX 3 3 HIS A 87 GLY A 92 1 6 HELIX 4 4 ASN A 93 TYR A 101 1 9 HELIX 5 5 SER A 112 ARG A 115 5 4 HELIX 6 6 ASN A 118 LEU A 122 5 5 HELIX 7 7 ASP A 124 THR A 139 1 16 HELIX 8 8 ASP A 181 SER A 186 5 6 HELIX 9 9 GLY A 209 GLY A 219 1 11 HELIX 10 10 THR A 237 SER A 245 1 9 HELIX 11 11 ASP A 263 GLU A 272 1 10 HELIX 12 12 SER A 301 TYR A 304 5 4 SHEET 1 AA 8 SER A 142 ILE A 144 0 SHEET 2 AA 8 ARG A 105 TYR A 107 1 O VAL A 106 N ILE A 144 SHEET 3 AA 8 ILE A 81 LEU A 82 1 O ILE A 81 N TYR A 107 SHEET 4 AA 8 HIS A 28 ASP A 33 1 O MET A 31 N LEU A 82 SHEET 5 AA 8 ALA A 20 SER A 25 -1 O ILE A 21 N VAL A 32 SHEET 6 AA 8 ASN A 6 ILE A 11 -1 O LYS A 7 N GLU A 24 SHEET 7 AA 8 ALA A 287 ARG A 293 -1 O THR A 288 N PHE A 10 SHEET 8 AA 8 GLY A 296 ASN A 299 -1 O GLY A 296 N ARG A 293 SHEET 1 AB 7 HIS A 153 PHE A 156 0 SHEET 2 AB 7 MET A 159 TYR A 164 -1 O MET A 159 N PHE A 156 SHEET 3 AB 7 ILE A 188 VAL A 193 -1 O ILE A 188 N TYR A 164 SHEET 4 AB 7 LYS A 196 LEU A 200 -1 O LYS A 196 N VAL A 193 SHEET 5 AB 7 LEU A 223 LYS A 225 1 O LEU A 223 N TYR A 199 SHEET 6 AB 7 LEU A 248 GLN A 251 1 O LEU A 248 N MET A 224 SHEET 7 AB 7 GLU A 276 ASN A 279 1 O GLU A 276 N ILE A 249 SHEET 1 AC 2 GLY A 313 LYS A 316 0 SHEET 2 AC 2 TRP A 322 GLN A 325 -1 O TRP A 323 N HIS A 315 SHEET 1 AD 2 GLY A 336 ILE A 340 0 SHEET 2 AD 2 GLU A 343 PHE A 347 -1 O GLU A 343 N ILE A 340 SHEET 1 AE 2 GLN A 357 TRP A 361 0 SHEET 2 AE 2 HIS A 364 LEU A 368 -1 O HIS A 364 N TRP A 361 SHEET 1 AF 2 LYS A 379 ILE A 381 0 SHEET 2 AF 2 ILE A 384 TYR A 386 -1 O ILE A 384 N ILE A 381 SHEET 1 AG 2 GLY A 397 GLN A 400 0 SHEET 2 AG 2 TRP A 405 LEU A 408 -1 O TYR A 406 N VAL A 399 SHEET 1 AH 2 GLY A 417 GLN A 420 0 SHEET 2 AH 2 TRP A 425 PHE A 428 -1 O TYR A 426 N LEU A 419 SHEET 1 AI 2 GLY A 437 ASP A 441 0 SHEET 2 AI 2 THR A 444 MET A 448 -1 O THR A 444 N ASP A 441 SHEET 1 AJ 2 GLY A 457 VAL A 461 0 SHEET 2 AJ 2 GLN A 464 LEU A 468 -1 O GLN A 464 N VAL A 461 SHEET 1 AK 2 GLY A 477 LYS A 481 0 SHEET 2 AK 2 ASP A 484 TYR A 488 -1 O ASP A 484 N LYS A 481 SHEET 1 AL 2 GLY A 497 ASP A 501 0 SHEET 2 AL 2 LYS A 504 LEU A 508 -1 O LYS A 504 N ASP A 501 SHEET 1 AM 2 GLY A 518 LYS A 519 0 SHEET 2 AM 2 THR A 525 VAL A 526 -1 O VAL A 526 N GLY A 518 LINK OE2 GLU A 36 CA CA A1551 1555 1555 2.32 LINK OD1 ASP A 37 CA CA A1551 1555 1555 2.42 LINK O ASP A 37 CA CA A1551 1555 1555 2.46 LINK OD2 ASP A 37 CA CA A1552 1555 1555 2.33 LINK O ASP A 39 CA CA A1551 1555 1555 2.33 LINK NE2 HIS A 85 ZN ZN A1550 1555 1555 2.11 LINK ND1 HIS A 87 ZN ZN A1550 1555 1555 2.09 LINK OD2 ASP A 89 ZN ZN A1549 1555 1555 1.99 LINK NE2 HIS A 90 ZN ZN A1549 1555 1555 2.07 LINK O GLY A 92 CA CA A1552 1555 1555 2.30 LINK OD1 ASP A 95 CA CA A1552 1555 1555 2.32 LINK OD2 ASP A 95 CA CA A1552 1555 1555 3.21 LINK OE1 GLU A 96 CA CA A1552 1555 1555 2.48 LINK OE2 GLU A 96 CA CA A1552 1555 1555 2.52 LINK OD1 ASN A 183 ZN ZN A1550 1555 1555 1.98 LINK OD1 ASP A 203 ZN ZN A1549 1555 1555 2.08 LINK OD1 ASP A 203 ZN ZN A1550 1555 1555 2.06 LINK NE2 HIS A 229 ZN ZN A1549 1555 1555 2.06 LINK O3 PC A1541 ZN ZN A1549 1555 1555 1.97 LINK O4 PC A1541 ZN ZN A1550 1555 1555 2.01 LINK CA CA A1551 O HOH A2056 1555 1555 2.42 LINK CA CA A1551 O HOH A2127 1555 1555 2.45 LINK CA CA A1551 O HOH A2128 1555 1555 2.39 LINK CA CA A1552 O HOH A2030 1555 1555 2.39 LINK CA CA A1552 O HOH A2081 1555 1555 2.46 SITE 1 AC1 6 ASP A 89 HIS A 90 ASP A 203 HIS A 229 SITE 2 AC1 6 PC A1541 ZN A1550 SITE 1 AC2 6 HIS A 85 HIS A 87 ASN A 183 ASP A 203 SITE 2 AC2 6 PC A1541 ZN A1549 SITE 1 AC3 6 GLU A 36 ASP A 37 ASP A 39 HOH A2056 SITE 2 AC3 6 HOH A2127 HOH A2128 SITE 1 AC4 6 ASP A 37 GLY A 92 ASP A 95 GLU A 96 SITE 2 AC4 6 HOH A2030 HOH A2081 SITE 1 AC5 12 GLY A 53 HIS A 87 ASP A 89 TRP A 123 SITE 2 AC5 12 ASN A 183 ASP A 203 HIS A 228 HIS A 229 SITE 3 AC5 12 ZN A1549 ZN A1550 HOH A2017 HOH A2190 SITE 1 AC6 11 ALA A 281 SER A 282 LYS A 283 TRP A 425 SITE 2 AC6 11 TYR A 446 MET A 454 SER A 471 HOH A2243 SITE 3 AC6 11 HOH A2426 HOH A2427 HOH A2428 SITE 1 AC7 9 TRP A 337 TRP A 344 TRP A 361 PHE A 366 SITE 2 AC7 9 GLU A 391 ASN A 392 HOH A2429 HOH A2430 SITE 3 AC7 9 HOH A2432 SITE 1 AC8 5 TRP A 323 TYR A 333 THR A 350 GLY A 351 SITE 2 AC8 5 GLU A 510 SITE 1 AC9 4 TRP A 398 TRP A 405 TYR A 426 THR A 451 SITE 1 BC1 5 TRP A 378 TRP A 385 TYR A 406 MET A 414 SITE 2 BC1 5 SER A 431 SITE 1 BC2 4 TRP A 438 TRP A 445 TYR A 466 ASP A 491 SITE 1 BC3 4 TRP A 478 TYR A 506 SER A 529 HOH A2412 CRYST1 173.490 58.120 68.650 90.00 108.29 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005764 0.000000 0.001905 0.00000 SCALE2 0.000000 0.017206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015342 0.00000