data_2BNI # _entry.id 2BNI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2BNI PDBE EBI-22455 WWPDB D_1290022455 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1CE9 unspecified 'HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER' PDB 1DGC unspecified 'GCN4 LEUCINE ZIPPER COMPLEXED WITH SPECIFIC ATF/CREB SITE DEOXYRIBONUCLEIC ACID' PDB 1ENV unspecified 'ATOMIC STRUCTURE OF THE ECTODOMAIN FROM HIV -1 GP41' PDB 1FAV unspecified 'THE STRUCTURE OF AN HIV-1 SPECIFIC CELL ENTRY INHIBITOR INCOMPLEX WITH THE HIV-1 GP41 TRIMERIC CORE' PDB 1GCL unspecified 'GCN4 LEUCINE ZIPPER CORE MUTANT P-LI' PDB 1GCM unspecified 'GCN4 LEUCINE ZIPPER CORE MUTANT P-LI' PDB 1GK6 unspecified 'HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER (Z2B)' PDB 1GZL unspecified 'CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET' PDB 1IHQ unspecified 'GLYTM1BZIP: A CHIMERIC PEPTIDE MODEL OF THE N-TERMINUS OF ARAT SHORT ALPHA TROPOMYOSIN WITH THE N-TERMINUS ENCODED BYEXON 1B' PDB 1IJ0 unspecified 'COILED COIL TRIMER GCN4-PVLS SER AT BURIED D POSITION' PDB 1IJ1 unspecified 'GCN4-PVLT COILED-COIL TRIMER WITH THREONINE AT THE D(12)POSITION' PDB 1IJ2 unspecified 'GCN4-PVTL COILED-COIL TRIMER WITH THREONINE AT THE A(16)POSITION' PDB 1IJ3 unspecified 'GCN4-PVSL COILED-COIL TRIMER WITH SERINE AT THE A(16)POSITION' PDB 1KQL unspecified 'CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF STRIATEDMUSCLE ALPHA-TROPOMYOSIN AT 2.7 ANGSTROM RESOLUTION' PDB 1LD4 unspecified 'PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS' PDB 1LLM unspecified 'CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA' PDB 1NKN unspecified 'VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTUREOF AN N-TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD' PDB 1PIQ unspecified 'CRYSTAL STRUCTURE OF GCN4-PIQ, A TRIMERIC COILED COIL WITH BURIED POLAR RESIDUES' PDB 1RB1 unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A TRIGONAL AUTOMATICSOLUTION' PDB 1RB4 unspecified 'ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL AUTOMATIC SOLUTION' PDB 1RB5 unspecified 'ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TRIGONAL FORM' PDB 1RB6 unspecified 'ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL FORM' PDB 1SWI unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A COMPLEXED WITH BENZENE' PDB 1TMZ unspecified 'TMZIP: A CHIMERIC PEPTIDE MODEL OF THE N- TERMINUS OF ALPHA TROPOMYOSIN, NMR, 15 STRUCTURES' PDB 1UNT unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNU unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNV unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNW unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNX unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNY unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNZ unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO0 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO1 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO2 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO3 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO4 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO5 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1VZL unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE MUTANT PLI-E20C' PDB 1W5G unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE ( ACETIMIDE MODIFICATION).' PDB 1W5H unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE.' PDB 1W5I unspecified 'ABA DOES NOT AFFECT TOPOLOGY OF PLI.' PDB 1W5J unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE' PDB 1W5K unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE' PDB 1W5L unspecified 'AN ANTI-PARALLEL TO PARALLEL SWITCH.' PDB 1YSA unspecified 'GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH AP-1 DEOXYRIBONUCLEIC ACID' PDB 1ZII unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE DIMERIC STATE' PDB 1ZIJ unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE TRIMERIC STATE' PDB 1ZIK unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16LYS IN THE DIMERIC STATE' PDB 1ZIL unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE DIMERIC STATE' PDB 1ZIM unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE TRIMERIC STATE' PDB 1ZTA unspecified 'LEUCINE ZIPPER MONOMER (NMR, 20 STRUCTURES)' PDB 2DGC unspecified 'GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DEOXYRIBONUCLEIC ACID' PDB 2ZTA unspecified 'GCN4 LEUCINE ZIPPER' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BNI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-03-24 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yadav, M.K.' 1 'Leman, L.J.' 2 'Stout, C.D.' 3 'Ghadiri, M.R.' 4 # _citation.id primary _citation.title 'Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 9723 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16008357 _citation.pdbx_database_id_DOI 10.1021/BI050742A # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yadav, M.K.' 1 ? primary 'Redman, J.E.' 2 ? primary 'Leman, L.J.' 3 ? primary 'Alvarez-Gutierrez, J.M.' 4 ? primary 'Zhang, Y.' 5 ? primary 'Stout, C.D.' 6 ? primary 'Ghadiri, M.R.' 7 ? # _cell.entry_id 2BNI _cell.length_a 25.814 _cell.length_b 25.814 _cell.length_c 148.595 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BNI _symmetry.space_group_name_H-M 'P 31' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'GENERAL CONTROL PROTEIN GCN4' 4100.854 4 ? YES ? ? 2 water nat water 18.015 55 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN, PLI E20C N16G Y17H' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(TYZ)RMKQIEDKLEEILSKGHHICNELARIKKLLGER' _entity_poly.pdbx_seq_one_letter_code_can XRMKQIEDKLEEILSKGHHICNELARIKKLLGER _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYZ n 1 2 ARG n 1 3 MET n 1 4 LYS n 1 5 GLN n 1 6 ILE n 1 7 GLU n 1 8 ASP n 1 9 LYS n 1 10 LEU n 1 11 GLU n 1 12 GLU n 1 13 ILE n 1 14 LEU n 1 15 SER n 1 16 LYS n 1 17 GLY n 1 18 HIS n 1 19 HIS n 1 20 ILE n 1 21 CYS n 1 22 ASN n 1 23 GLU n 1 24 LEU n 1 25 ALA n 1 26 ARG n 1 27 ILE n 1 28 LYS n 1 29 LYS n 1 30 LEU n 1 31 LEU n 1 32 GLY n 1 33 GLU n 1 34 ARG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'SACCHAROMYCES CEREVISIAE' _pdbx_entity_src_syn.organism_common_name ;BAKER'S YEAST ; _pdbx_entity_src_syn.ncbi_taxonomy_id 4932 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2BNI 1 ? ? 2BNI ? 2 UNP GCN4_YEAST 1 ? ? P03069 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BNI A 1 ? 1 ? 2BNI 0 ? 0 ? 0 0 2 2 2BNI A 2 ? 34 ? P03069 249 ? 281 ? 1 33 3 1 2BNI B 1 ? 1 ? 2BNI 0 ? 0 ? 0 0 4 2 2BNI B 2 ? 34 ? P03069 249 ? 281 ? 1 33 5 1 2BNI C 1 ? 1 ? 2BNI 0 ? 0 ? 0 0 6 2 2BNI C 2 ? 34 ? P03069 249 ? 281 ? 1 33 7 1 2BNI D 1 ? 1 ? 2BNI 0 ? 0 ? 0 0 8 2 2BNI D 2 ? 34 ? P03069 249 ? 281 ? 1 33 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2BNI ILE A 6 ? UNP P03069 LEU 253 conflict 5 1 1 2BNI LEU A 10 ? UNP P03069 VAL 257 conflict 9 2 1 2BNI ILE A 13 ? UNP P03069 LEU 260 conflict 12 3 1 2BNI GLY A 17 ? UNP P03069 ASN 264 'engineered mutation' 16 4 1 2BNI HIS A 18 ? UNP P03069 TYR 265 'engineered mutation' 17 5 1 2BNI ILE A 20 ? UNP P03069 LEU 267 conflict 19 6 1 2BNI CYS A 21 ? UNP P03069 GLU 268 'engineered mutation' 20 7 1 2BNI LEU A 24 ? UNP P03069 VAL 271 conflict 23 8 1 2BNI ILE A 27 ? UNP P03069 LEU 274 conflict 26 9 1 2BNI LEU A 31 ? UNP P03069 VAL 278 conflict 30 10 3 2BNI ILE B 6 ? UNP P03069 LEU 253 conflict 5 11 3 2BNI LEU B 10 ? UNP P03069 VAL 257 conflict 9 12 3 2BNI ILE B 13 ? UNP P03069 LEU 260 conflict 12 13 3 2BNI GLY B 17 ? UNP P03069 ASN 264 'engineered mutation' 16 14 3 2BNI HIS B 18 ? UNP P03069 TYR 265 'engineered mutation' 17 15 3 2BNI ILE B 20 ? UNP P03069 LEU 267 conflict 19 16 3 2BNI CYS B 21 ? UNP P03069 GLU 268 'engineered mutation' 20 17 3 2BNI LEU B 24 ? UNP P03069 VAL 271 conflict 23 18 3 2BNI ILE B 27 ? UNP P03069 LEU 274 conflict 26 19 3 2BNI LEU B 31 ? UNP P03069 VAL 278 conflict 30 20 5 2BNI ILE C 6 ? UNP P03069 LEU 253 conflict 5 21 5 2BNI LEU C 10 ? UNP P03069 VAL 257 conflict 9 22 5 2BNI ILE C 13 ? UNP P03069 LEU 260 conflict 12 23 5 2BNI GLY C 17 ? UNP P03069 ASN 264 'engineered mutation' 16 24 5 2BNI HIS C 18 ? UNP P03069 TYR 265 'engineered mutation' 17 25 5 2BNI ILE C 20 ? UNP P03069 LEU 267 conflict 19 26 5 2BNI CYS C 21 ? UNP P03069 GLU 268 'engineered mutation' 20 27 5 2BNI LEU C 24 ? UNP P03069 VAL 271 conflict 23 28 5 2BNI ILE C 27 ? UNP P03069 LEU 274 conflict 26 29 5 2BNI LEU C 31 ? UNP P03069 VAL 278 conflict 30 30 7 2BNI ILE D 6 ? UNP P03069 LEU 253 conflict 5 31 7 2BNI LEU D 10 ? UNP P03069 VAL 257 conflict 9 32 7 2BNI ILE D 13 ? UNP P03069 LEU 260 conflict 12 33 7 2BNI GLY D 17 ? UNP P03069 ASN 264 'engineered mutation' 16 34 7 2BNI HIS D 18 ? UNP P03069 TYR 265 'engineered mutation' 17 35 7 2BNI ILE D 20 ? UNP P03069 LEU 267 conflict 19 36 7 2BNI CYS D 21 ? UNP P03069 GLU 268 'engineered mutation' 20 37 7 2BNI LEU D 24 ? UNP P03069 VAL 271 conflict 23 38 7 2BNI ILE D 27 ? UNP P03069 LEU 274 conflict 26 39 7 2BNI LEU D 31 ? UNP P03069 VAL 278 conflict 30 40 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 TYZ non-polymer . 'PARA ACETAMIDO BENZOIC ACID' ? 'C9 H9 N O3' 179.173 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BNI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.8 _exptl_crystal.density_percent_sol 30.6 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'SITTING DROP WITH 200NL 20% PEG 3350 0.2M POTASSIUM THIOCYANATE AND 200NL 20MG/ML PEPTIDE STOCK IN WATER.' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2004-12-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.pdbx_wavelength 0.97 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2BNI _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.500 _reflns.number_obs 89229 _reflns.number_all ? _reflns.percent_possible_obs 97.2 _reflns.pdbx_Rmerge_I_obs 0.07000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.6500 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.170 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2BNI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16376 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 149.07 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 97.2 _refine.ls_R_factor_obs 0.239 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.237 _refine.ls_R_factor_R_free 0.276 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 873 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.936 _refine.correlation_coeff_Fo_to_Fc_free 0.921 _refine.B_iso_mean 17.70 _refine.aniso_B[1][1] 1.22000 _refine.aniso_B[2][2] 1.22000 _refine.aniso_B[3][3] -1.83000 _refine.aniso_B[1][2] 0.61000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. MAPS WERE VERY SHARP AND ABA GROUPS WERE CLEAR. R FACTOR A LITTLE HIGHER THAN EXPECTED, ALTHOUGH CONSISTENT WITH OTHER STRUCTURES. SPOTS WERE A LITTLE STREAKY WITH AN ICE RING, BUT DATA ENDED UP PROCESSING WELL.THIS PEPTIDE IS AN ACTIVE AMINOACYL TRANSFERASE AND WILL HOPEFULLY BE FOUND TO HAVE SOME SORT OF BINDING AND CATALYTIC ABILITY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.110 _refine.pdbx_overall_ESU_R_Free 0.110 _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1022 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 1077 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 149.07 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.021 ? 1043 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.071 2.026 ? 1379 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.189 5.000 ? 126 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 22.352 25.610 ? 41 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.937 15.000 ? 232 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10.267 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.129 0.200 ? 157 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 721 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.222 0.200 ? 467 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.309 0.200 ? 743 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.123 0.200 ? 33 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.273 0.200 ? 40 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.286 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.341 1.500 ? 647 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.127 2.000 ? 1027 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.534 3.000 ? 396 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 5.791 4.500 ? 352 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.54 _refine_ls_shell.number_reflns_R_work 917 _refine_ls_shell.R_factor_R_work 0.2230 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2730 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2BNI _struct.title 'pLI mutant E20C L16G Y17H, antiparallel' _struct.pdbx_descriptor 'GENERAL CONTROL PROTEIN GCN4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BNI _struct_keywords.pdbx_keywords 'FOUR HELIX BUNDLE' _struct_keywords.text 'FOUR HELIX BUNDLE, ANTIPARALLEL FOUR HELIX BUNDLE ACYL TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 3 ? LEU A 31 ? MET A 2 LEU A 30 1 ? 29 HELX_P HELX_P2 2 ARG B 2 ? ARG B 34 ? ARG B 1 ARG B 33 1 ? 33 HELX_P HELX_P3 3 ARG C 2 ? ARG C 34 ? ARG C 1 ARG C 33 1 ? 33 HELX_P HELX_P4 4 MET D 3 ? GLY D 32 ? MET D 2 GLY D 31 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? B TYZ 1 C7 ? ? ? 1_555 B ARG 2 N ? ? B TYZ 0 B ARG 1 1_555 ? ? ? ? ? ? ? 1.278 ? covale2 covale both ? C TYZ 1 C7 ? ? ? 1_555 C ARG 2 N ? ? C TYZ 0 C ARG 1 1_555 ? ? ? ? ? ? ? 1.272 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2BNI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BNI _atom_sites.fract_transf_matrix[1][1] 0.038739 _atom_sites.fract_transf_matrix[1][2] 0.022366 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.044732 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006730 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYZ 1 0 ? ? ? A . n A 1 2 ARG 2 1 1 ARG ARG A . n A 1 3 MET 3 2 2 MET MET A . n A 1 4 LYS 4 3 3 LYS LYS A . n A 1 5 GLN 5 4 4 GLN GLN A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 ASP 8 7 7 ASP ASP A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 ILE 13 12 12 ILE ILE A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 GLY 17 16 16 GLY GLY A . n A 1 18 HIS 18 17 17 HIS HIS A . n A 1 19 HIS 19 18 18 HIS HIS A . n A 1 20 ILE 20 19 19 ILE ILE A . n A 1 21 CYS 21 20 20 CYS CYS A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 ARG 26 25 25 ARG ARG A . n A 1 27 ILE 27 26 26 ILE ILE A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 GLY 32 31 ? ? ? A . n A 1 33 GLU 33 32 ? ? ? A . n A 1 34 ARG 34 33 ? ? ? A . n B 1 1 TYZ 1 0 0 TYZ TYZ B . n B 1 2 ARG 2 1 1 ARG ARG B . n B 1 3 MET 3 2 2 MET MET B . n B 1 4 LYS 4 3 3 LYS LYS B . n B 1 5 GLN 5 4 4 GLN GLN B . n B 1 6 ILE 6 5 5 ILE ILE B . n B 1 7 GLU 7 6 6 GLU GLU B . n B 1 8 ASP 8 7 7 ASP ASP B . n B 1 9 LYS 9 8 8 LYS LYS B . n B 1 10 LEU 10 9 9 LEU LEU B . n B 1 11 GLU 11 10 10 GLU GLU B . n B 1 12 GLU 12 11 11 GLU GLU B . n B 1 13 ILE 13 12 12 ILE ILE B . n B 1 14 LEU 14 13 13 LEU LEU B . n B 1 15 SER 15 14 14 SER SER B . n B 1 16 LYS 16 15 15 LYS LYS B . n B 1 17 GLY 17 16 16 GLY GLY B . n B 1 18 HIS 18 17 17 HIS HIS B . n B 1 19 HIS 19 18 18 HIS HIS B . n B 1 20 ILE 20 19 19 ILE ILE B . n B 1 21 CYS 21 20 20 CYS CYS B . n B 1 22 ASN 22 21 21 ASN ASN B . n B 1 23 GLU 23 22 22 GLU GLU B . n B 1 24 LEU 24 23 23 LEU LEU B . n B 1 25 ALA 25 24 24 ALA ALA B . n B 1 26 ARG 26 25 25 ARG ARG B . n B 1 27 ILE 27 26 26 ILE ILE B . n B 1 28 LYS 28 27 27 LYS LYS B . n B 1 29 LYS 29 28 28 LYS LYS B . n B 1 30 LEU 30 29 29 LEU LEU B . n B 1 31 LEU 31 30 30 LEU LEU B . n B 1 32 GLY 32 31 31 GLY GLY B . n B 1 33 GLU 33 32 32 GLU GLU B . n B 1 34 ARG 34 33 33 ARG ARG B . n C 1 1 TYZ 1 0 0 TYZ TYZ C . n C 1 2 ARG 2 1 1 ARG ARG C . n C 1 3 MET 3 2 2 MET MET C . n C 1 4 LYS 4 3 3 LYS LYS C . n C 1 5 GLN 5 4 4 GLN GLN C . n C 1 6 ILE 6 5 5 ILE ILE C . n C 1 7 GLU 7 6 6 GLU GLU C . n C 1 8 ASP 8 7 7 ASP ASP C . n C 1 9 LYS 9 8 8 LYS LYS C . n C 1 10 LEU 10 9 9 LEU LEU C . n C 1 11 GLU 11 10 10 GLU GLU C . n C 1 12 GLU 12 11 11 GLU GLU C . n C 1 13 ILE 13 12 12 ILE ILE C . n C 1 14 LEU 14 13 13 LEU LEU C . n C 1 15 SER 15 14 14 SER SER C . n C 1 16 LYS 16 15 15 LYS LYS C . n C 1 17 GLY 17 16 16 GLY GLY C . n C 1 18 HIS 18 17 17 HIS HIS C . n C 1 19 HIS 19 18 18 HIS HIS C . n C 1 20 ILE 20 19 19 ILE ILE C . n C 1 21 CYS 21 20 20 CYS CYS C . n C 1 22 ASN 22 21 21 ASN ASN C . n C 1 23 GLU 23 22 22 GLU GLU C . n C 1 24 LEU 24 23 23 LEU LEU C . n C 1 25 ALA 25 24 24 ALA ALA C . n C 1 26 ARG 26 25 25 ARG ARG C . n C 1 27 ILE 27 26 26 ILE ILE C . n C 1 28 LYS 28 27 27 LYS LYS C . n C 1 29 LYS 29 28 28 LYS LYS C . n C 1 30 LEU 30 29 29 LEU LEU C . n C 1 31 LEU 31 30 30 LEU LEU C . n C 1 32 GLY 32 31 31 GLY GLY C . n C 1 33 GLU 33 32 32 GLU GLU C . n C 1 34 ARG 34 33 33 ARG ARG C . n D 1 1 TYZ 1 0 ? ? ? D . n D 1 2 ARG 2 1 1 ARG ARG D . n D 1 3 MET 3 2 2 MET MET D . n D 1 4 LYS 4 3 3 LYS LYS D . n D 1 5 GLN 5 4 4 GLN GLN D . n D 1 6 ILE 6 5 5 ILE ILE D . n D 1 7 GLU 7 6 6 GLU GLU D . n D 1 8 ASP 8 7 7 ASP ASP D . n D 1 9 LYS 9 8 8 LYS LYS D . n D 1 10 LEU 10 9 9 LEU LEU D . n D 1 11 GLU 11 10 10 GLU GLU D . n D 1 12 GLU 12 11 11 GLU GLU D . n D 1 13 ILE 13 12 12 ILE ILE D . n D 1 14 LEU 14 13 13 LEU LEU D . n D 1 15 SER 15 14 14 SER SER D . n D 1 16 LYS 16 15 15 LYS LYS D . n D 1 17 GLY 17 16 16 GLY GLY D . n D 1 18 HIS 18 17 17 HIS HIS D . n D 1 19 HIS 19 18 18 HIS HIS D . n D 1 20 ILE 20 19 19 ILE ILE D . n D 1 21 CYS 21 20 20 CYS CYS D . n D 1 22 ASN 22 21 21 ASN ASN D . n D 1 23 GLU 23 22 22 GLU GLU D . n D 1 24 LEU 24 23 23 LEU LEU D . n D 1 25 ALA 25 24 24 ALA ALA D . n D 1 26 ARG 26 25 25 ARG ARG D . n D 1 27 ILE 27 26 26 ILE ILE D . n D 1 28 LYS 28 27 27 LYS LYS D . n D 1 29 LYS 29 28 28 LYS LYS D . n D 1 30 LEU 30 29 29 LEU LEU D . n D 1 31 LEU 31 30 30 LEU LEU D . n D 1 32 GLY 32 31 31 GLY GLY D . n D 1 33 GLU 33 32 32 GLU GLU D . n D 1 34 ARG 34 33 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 2001 2001 HOH HOH A . E 2 HOH 2 2002 2002 HOH HOH A . E 2 HOH 3 2003 2003 HOH HOH A . E 2 HOH 4 2004 2004 HOH HOH A . E 2 HOH 5 2005 2005 HOH HOH A . E 2 HOH 6 2006 2006 HOH HOH A . E 2 HOH 7 2007 2007 HOH HOH A . E 2 HOH 8 2008 2008 HOH HOH A . E 2 HOH 9 2009 2009 HOH HOH A . F 2 HOH 1 2001 2001 HOH HOH B . F 2 HOH 2 2002 2002 HOH HOH B . F 2 HOH 3 2003 2003 HOH HOH B . F 2 HOH 4 2004 2004 HOH HOH B . F 2 HOH 5 2005 2005 HOH HOH B . F 2 HOH 6 2006 2006 HOH HOH B . F 2 HOH 7 2007 2007 HOH HOH B . F 2 HOH 8 2008 2008 HOH HOH B . F 2 HOH 9 2009 2009 HOH HOH B . F 2 HOH 10 2010 2010 HOH HOH B . F 2 HOH 11 2011 2011 HOH HOH B . F 2 HOH 12 2012 2012 HOH HOH B . F 2 HOH 13 2013 2013 HOH HOH B . F 2 HOH 14 2014 2014 HOH HOH B . F 2 HOH 15 2015 2015 HOH HOH B . F 2 HOH 16 2016 2016 HOH HOH B . F 2 HOH 17 2017 2017 HOH HOH B . G 2 HOH 1 2001 2001 HOH HOH C . G 2 HOH 2 2002 2002 HOH HOH C . G 2 HOH 3 2003 2003 HOH HOH C . G 2 HOH 4 2004 2004 HOH HOH C . G 2 HOH 5 2005 2005 HOH HOH C . G 2 HOH 6 2006 2006 HOH HOH C . G 2 HOH 7 2007 2007 HOH HOH C . G 2 HOH 8 2008 2008 HOH HOH C . G 2 HOH 9 2009 2009 HOH HOH C . G 2 HOH 10 2010 2010 HOH HOH C . G 2 HOH 11 2011 2011 HOH HOH C . G 2 HOH 12 2012 2012 HOH HOH C . G 2 HOH 13 2013 2013 HOH HOH C . G 2 HOH 14 2014 2014 HOH HOH C . G 2 HOH 15 2015 2015 HOH HOH C . G 2 HOH 16 2016 2016 HOH HOH C . H 2 HOH 1 2001 2001 HOH HOH D . H 2 HOH 2 2002 2002 HOH HOH D . H 2 HOH 3 2003 2003 HOH HOH D . H 2 HOH 4 2004 2004 HOH HOH D . H 2 HOH 5 2005 2005 HOH HOH D . H 2 HOH 6 2006 2006 HOH HOH D . H 2 HOH 7 2007 2007 HOH HOH D . H 2 HOH 8 2008 2008 HOH HOH D . H 2 HOH 9 2009 2009 HOH HOH D . H 2 HOH 10 2010 2010 HOH HOH D . H 2 HOH 11 2011 2011 HOH HOH D . H 2 HOH 12 2012 2012 HOH HOH D . H 2 HOH 13 2013 2013 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-30 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 D _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 32 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 D _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2013 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.96 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 SER _pdbx_validate_rmsd_angle.auth_seq_id_1 14 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 SER _pdbx_validate_rmsd_angle.auth_seq_id_2 14 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 SER _pdbx_validate_rmsd_angle.auth_seq_id_3 14 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 121.77 _pdbx_validate_rmsd_angle.angle_target_value 110.10 _pdbx_validate_rmsd_angle.angle_deviation 11.67 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 1 ? N ? A ARG 2 N 2 1 Y 1 A ARG 1 ? CA ? A ARG 2 CA 3 1 Y 1 A ARG 1 ? CB ? A ARG 2 CB 4 1 Y 1 A ARG 1 ? CG ? A ARG 2 CG 5 1 Y 1 A ARG 1 ? CD ? A ARG 2 CD 6 1 Y 1 A ARG 1 ? NE ? A ARG 2 NE 7 1 Y 1 A ARG 1 ? CZ ? A ARG 2 CZ 8 1 Y 1 A ARG 1 ? NH1 ? A ARG 2 NH1 9 1 Y 1 A ARG 1 ? NH2 ? A ARG 2 NH2 10 1 Y 1 A LYS 15 ? CG ? A LYS 16 CG 11 1 Y 1 A LYS 15 ? CD ? A LYS 16 CD 12 1 Y 1 A LYS 15 ? CE ? A LYS 16 CE 13 1 Y 1 A LYS 15 ? NZ ? A LYS 16 NZ 14 1 Y 1 A ASN 21 ? CG ? A ASN 22 CG 15 1 Y 1 A ASN 21 ? OD1 ? A ASN 22 OD1 16 1 Y 1 A ASN 21 ? ND2 ? A ASN 22 ND2 17 1 Y 1 A ARG 25 ? CZ ? A ARG 26 CZ 18 1 Y 1 A ARG 25 ? NH1 ? A ARG 26 NH1 19 1 Y 1 A ARG 25 ? NH2 ? A ARG 26 NH2 20 1 Y 1 A LYS 28 ? CE ? A LYS 29 CE 21 1 Y 1 A LYS 28 ? NZ ? A LYS 29 NZ 22 1 Y 1 B LYS 3 ? CD ? B LYS 4 CD 23 1 Y 1 B LYS 3 ? CE ? B LYS 4 CE 24 1 Y 1 B LYS 3 ? NZ ? B LYS 4 NZ 25 1 Y 1 B LYS 15 ? CD ? B LYS 16 CD 26 1 Y 1 B LYS 15 ? CE ? B LYS 16 CE 27 1 Y 1 B LYS 15 ? NZ ? B LYS 16 NZ 28 1 Y 1 B ARG 25 ? NE ? B ARG 26 NE 29 1 Y 1 B ARG 25 ? CZ ? B ARG 26 CZ 30 1 Y 1 B ARG 25 ? NH1 ? B ARG 26 NH1 31 1 Y 1 B ARG 25 ? NH2 ? B ARG 26 NH2 32 1 Y 1 C LYS 3 ? CD ? C LYS 4 CD 33 1 Y 1 C LYS 3 ? CE ? C LYS 4 CE 34 1 Y 1 C LYS 3 ? NZ ? C LYS 4 NZ 35 1 Y 1 C LYS 15 ? CD ? C LYS 16 CD 36 1 Y 1 C LYS 15 ? CE ? C LYS 16 CE 37 1 Y 1 C LYS 15 ? NZ ? C LYS 16 NZ 38 1 Y 1 C GLU 22 ? OE2 ? C GLU 23 OE2 39 1 Y 1 C LYS 28 ? CE ? C LYS 29 CE 40 1 Y 1 C LYS 28 ? NZ ? C LYS 29 NZ 41 1 Y 1 D ARG 1 ? N ? D ARG 2 N 42 1 Y 1 D ARG 1 ? CA ? D ARG 2 CA 43 1 Y 1 D ARG 1 ? CB ? D ARG 2 CB 44 1 Y 1 D ARG 1 ? CG ? D ARG 2 CG 45 1 Y 1 D ARG 1 ? CD ? D ARG 2 CD 46 1 Y 1 D ARG 1 ? NE ? D ARG 2 NE 47 1 Y 1 D ARG 1 ? CZ ? D ARG 2 CZ 48 1 Y 1 D ARG 1 ? NH1 ? D ARG 2 NH1 49 1 Y 1 D ARG 1 ? NH2 ? D ARG 2 NH2 50 1 Y 1 D LYS 3 ? CG ? D LYS 4 CG 51 1 Y 1 D LYS 3 ? CD ? D LYS 4 CD 52 1 Y 1 D LYS 3 ? CE ? D LYS 4 CE 53 1 Y 1 D LYS 3 ? NZ ? D LYS 4 NZ 54 1 Y 1 D GLN 4 ? CG ? D GLN 5 CG 55 1 Y 1 D GLN 4 ? CD ? D GLN 5 CD 56 1 Y 1 D GLN 4 ? OE1 ? D GLN 5 OE1 57 1 Y 1 D GLN 4 ? NE2 ? D GLN 5 NE2 58 1 Y 1 D ARG 25 ? NE ? D ARG 26 NE 59 1 Y 1 D ARG 25 ? CZ ? D ARG 26 CZ 60 1 Y 1 D ARG 25 ? NH1 ? D ARG 26 NH1 61 1 Y 1 D ARG 25 ? NH2 ? D ARG 26 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TYZ 0 ? A TYZ 1 2 1 Y 1 A GLY 31 ? A GLY 32 3 1 Y 1 A GLU 32 ? A GLU 33 4 1 Y 1 A ARG 33 ? A ARG 34 5 1 Y 1 D TYZ 0 ? D TYZ 1 6 1 Y 1 D ARG 33 ? D ARG 34 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #