data_2BNZ # _entry.id 2BNZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2BNZ pdb_00002bnz 10.2210/pdb2bnz/pdb PDBE EBI-23538 ? ? WWPDB D_1290023538 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1IRQ unspecified 'CRYSTAL STRUCTURE OF OMEGA TRANSCRIPTIONAL REPRESSOR AT1.5A RESOLUTION' PDB 2BNW unspecified 'STRUCTURAL BASIS FOR COOPERATIVE BINDING OF RIBBON-HELIX-HELIX OMEGA REPRESSOR TO DIRECT DNA HEPTAD REPEATS' PDB 2CAX unspecified 'STRUCTURAL BASIS FOR COOPERATIVE BINDING OF RIBBON-HELIX-HELIX REPRESSOR OMEGA TO MUTATED DIRECT DNA HEPTAD REPEATS' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BNZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-04-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Weihofen, W.A.' 1 'Cicek, A.' 2 'Pratto, F.' 3 'Alonso, J.C.' 4 'Saenger, W.' 5 # _citation.id primary _citation.title 'Structures of Omega Repressors Bound to Direct and Inverted DNA Repeats Explain Modulation of Transcription.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 34 _citation.page_first 1450 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16528102 _citation.pdbx_database_id_DOI 10.1093/NAR/GKL015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Weihofen, W.A.' 1 ? primary 'Cicek, A.' 2 ? primary 'Pratto, F.' 3 ? primary 'Alonso, J.C.' 4 ? primary 'Saenger, W.' 5 ? # _cell.entry_id 2BNZ _cell.length_a 75.991 _cell.length_b 42.505 _cell.length_c 103.727 _cell.angle_alpha 90.00 _cell.angle_beta 107.17 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BNZ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ORF OMEGA' 6137.223 4 ? ? 'RIBBON-HELIX-HELIX DOMAIN, RESIDUES 20-71' ? 2 polymer syn ;5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*GP *TP*GP*AP*TP*TP*AP*GP*C)-3' ; 5548.630 2 ? ? ? ;SEQUENCE\: 5'- GAA TCA CAA GTG ATT AGC -3', 18MER DNA OLIGONUCLEOTIDE, FIRST STRAND, INVERTED DNA HEPTAD REPEATS (5'- AATCAC A/T -3'), NUCLEOTIDES G5 - G16, G18 AND E18 WERE NOT MODELLED ; 3 polymer syn ;5'-D(*CP*TP*AP*AP*TP*CP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3' ; 5481.564 2 ? ? ? ;SEQUENCE\: 5'- CTA ATC ACT TGT GAT TCG -3', 18MER DNA OLIGONUCLEOTIDE, SECOND STRAND, NUCLEOTIDES H19 - H31 WERE NOT MODELLED ; 4 water nat water 18.015 45 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;OMEGA TRANSCRIPTIONAL REPRESSOR, ORF OMEGA' ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL MAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL A,B,C,D ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DT)(DC)(DA)(DC)(DA)(DA)(DG)(DT)(DG)(DA)(DT)(DT)(DA)(DG)(DC)' GAATCACAAGTGATTAGC E,G ? 3 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DA)(DT)(DC)(DA)(DC)(DT)(DT)(DG)(DT)(DG)(DA)(DT)(DT)(DC)(DG)' CTAATCACTTGTGATTCG F,H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 LYS n 1 5 ASP n 1 6 ILE n 1 7 MET n 1 8 GLY n 1 9 ASP n 1 10 LYS n 1 11 THR n 1 12 VAL n 1 13 ARG n 1 14 VAL n 1 15 ARG n 1 16 ALA n 1 17 ASP n 1 18 LEU n 1 19 HIS n 1 20 HIS n 1 21 ILE n 1 22 ILE n 1 23 LYS n 1 24 ILE n 1 25 GLU n 1 26 THR n 1 27 ALA n 1 28 LYS n 1 29 ASN n 1 30 GLY n 1 31 GLY n 1 32 ASN n 1 33 VAL n 1 34 LYS n 1 35 GLU n 1 36 VAL n 1 37 MET n 1 38 ASP n 1 39 GLN n 1 40 ALA n 1 41 LEU n 1 42 GLU n 1 43 GLU n 1 44 TYR n 1 45 ILE n 1 46 ARG n 1 47 LYS n 1 48 TYR n 1 49 LEU n 1 50 PRO n 1 51 ASP n 1 52 LYS n 1 53 LEU n 2 1 DG n 2 2 DA n 2 3 DA n 2 4 DT n 2 5 DC n 2 6 DA n 2 7 DC n 2 8 DA n 2 9 DA n 2 10 DG n 2 11 DT n 2 12 DG n 2 13 DA n 2 14 DT n 2 15 DT n 2 16 DA n 2 17 DG n 2 18 DC n 3 1 DC n 3 2 DT n 3 3 DA n 3 4 DA n 3 5 DT n 3 6 DC n 3 7 DA n 3 8 DC n 3 9 DT n 3 10 DT n 3 11 DG n 3 12 DT n 3 13 DG n 3 14 DA n 3 15 DT n 3 16 DT n 3 17 DC n 3 18 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'STREPTOCOCCUS PYOGENES' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1314 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28A-DELTA19OMEGA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'OMEGA TRANSCRIPTIONAL REPRESSOR IS ENCODED BY PLASMID PSM19035 OF THE INC18 FAMILY OF PLASMIDS' # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 'INVERTED REPEATS OCCUR IN PROMOTER REGIONS PRECEDING GENES CONTROLLED BY OMEGA TRANSCRIPTIONAL REPRESSOR, PLASMID PSM19035' 3 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 'INVERTED REPEATS OCCUR IN PROMOTER REGIONS PRECEDING GENES CONTROLLED BY OMEGA TRANSCRIPTIONAL REPRESSOR, PLASMID PSM19035' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2BNZ 1 ? ? 2BNZ ? 2 UNP Q57468_STRPY 1 ? ? Q57468 ? 3 PDB 2BNZ 2 ? ? 2BNZ ? 4 PDB 2BNZ 3 ? ? 2BNZ ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BNZ A 1 ? 1 ? 2BNZ 19 ? 19 ? 19 19 2 2 2BNZ A 2 ? 53 ? Q57468 20 ? 71 ? 20 71 3 1 2BNZ B 1 ? 1 ? 2BNZ 19 ? 19 ? 19 19 4 2 2BNZ B 2 ? 53 ? Q57468 20 ? 71 ? 20 71 5 1 2BNZ C 1 ? 1 ? 2BNZ 19 ? 19 ? 19 19 6 2 2BNZ C 2 ? 53 ? Q57468 20 ? 71 ? 20 71 7 1 2BNZ D 1 ? 1 ? 2BNZ 19 ? 19 ? 19 19 8 2 2BNZ D 2 ? 53 ? Q57468 20 ? 71 ? 20 71 9 3 2BNZ E 1 ? 18 ? 2BNZ 1 ? 18 ? 1 18 10 4 2BNZ F 1 ? 18 ? 2BNZ 19 ? 36 ? 19 36 11 3 2BNZ G 1 ? 11 ? 2BNZ 1 ? 18 ? 1 18 12 4 2BNZ H 1 ? 18 ? 2BNZ 19 ? 36 ? 19 36 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BNZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.6 _exptl_crystal.density_percent_sol 65.9 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '120 MM NA/KPO4, PH 7.2, 2.2 M DINATRIUMMALONATE, PH 7.5, 3 % 2-METHYL-2,4-PENTANDIOL' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-10-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength 1.08 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2BNZ _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.000 _reflns.d_resolution_high 2.600 _reflns.number_obs 18516 _reflns.number_all ? _reflns.percent_possible_obs 92.8 _reflns.pdbx_Rmerge_I_obs 0.11000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.7000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.500 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.69 _reflns_shell.percent_possible_all 72.2 _reflns_shell.Rmerge_I_obs 0.29000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.100 _reflns_shell.pdbx_redundancy 1.90 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2BNZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 17564 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 100.00 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 92.8 _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.225 _refine.ls_R_factor_R_free 0.258 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 944 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.909 _refine.correlation_coeff_Fo_to_Fc_free 0.877 _refine.B_iso_mean 34.17 _refine.aniso_B[1][1] -1.18000 _refine.aniso_B[2][2] 0.10000 _refine.aniso_B[3][3] 2.42000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 2.27000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. NUCLEOTIDES G5-G16, G18, E18 AND H19-H31 WERE NOT MODELLED DUE TO PATCHY ELECTRON DENSITY ; _refine.pdbx_starting_model 'PDB ENTRY 2BNW' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.365 _refine.pdbx_overall_ESU_R_Free 0.268 _refine.overall_SU_ML 0.202 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 18.753 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1613 _refine_hist.pdbx_number_atoms_nucleic_acid 927 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 2585 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 100.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.021 ? 2665 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 2009 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.044 2.410 ? 3765 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.727 3.000 ? 4771 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.435 5.000 ? 195 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.312 24.667 ? 75 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.026 15.000 ? 349 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.490 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.051 0.200 ? 426 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 2208 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 287 'X-RAY DIFFRACTION' ? r_nbd_refined 0.208 0.300 ? 616 'X-RAY DIFFRACTION' ? r_nbd_other 0.200 0.300 ? 2265 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.206 0.500 ? 1179 'X-RAY DIFFRACTION' ? r_nbtor_other 0.088 0.500 ? 1301 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.209 0.400 ? 164 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.110 0.300 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.181 0.300 ? 46 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.217 0.400 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.878 2.000 ? 1294 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.051 3.000 ? 1594 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.554 2.000 ? 2201 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.035 3.000 ? 2171 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.67 _refine_ls_shell.number_reflns_R_work 981 _refine_ls_shell.R_factor_R_work 0.3660 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.4040 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? -0.811700 -0.520090 0.265800 -0.543280 0.505220 -0.670520 0.214440 -0.688670 -0.692640 -27.64397 -14.37253 -10.42639 2 given ? -0.049340 0.828370 -0.558000 -0.993300 0.017740 0.114180 0.104480 0.559890 0.821950 -23.72695 -9.27670 23.01543 3 given ? -0.537710 0.819060 -0.200020 0.828270 0.468800 -0.306910 -0.157610 -0.330690 -0.930490 -28.82347 17.26773 4.42905 # _struct.entry_id 2BNZ _struct.title 'Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeats' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BNZ _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'DNA BINDING PROTEIN-DNA COMPLEX, RIBBON-HELIX-HELIX, RHH, METJ/ARC SUPERFAMILY, COOPERATIVE DNA BINDING, INC18 FAMILY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? # _struct_biol.id 1 _struct_biol.details ;THE DESIGNATION OF THE QUATERNARY STRUCTURE AS OCTAMERICREFLECTS THE STANDARD PQS CONVENTION FOR DESCRIBINGHETEROGENEOUS ASSEMBLIES. HOWEVER, THE CRYSTALLOGRAPHICASYMMETRIC UNIT ACTUALLY CONTAINS ONE DNA FRAGMENT(COMPRISED OF CHAINS E AND F) WHICH IS BOUND TO TWOPROTEIN DIMERS (CHAINS A, B, C AND D). A FURTHER FREEDNA FRAGMENT (CHAINS G AND H) IS PRESENT IN THE A.U. BUTIS LARGELY UNOBSERVED IN ELECTRON DENSITY MAPS. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 16 ? ASN A 29 ? ALA A 34 ASN A 47 1 ? 14 HELX_P HELX_P2 2 ASN A 32 ? LEU A 49 ? ASN A 50 LEU A 67 1 ? 18 HELX_P HELX_P3 3 PRO A 50 ? LEU A 53 ? PRO A 68 LEU A 71 5 ? 4 HELX_P HELX_P4 4 ALA B 16 ? ASN B 29 ? ALA B 34 ASN B 47 1 ? 14 HELX_P HELX_P5 5 ASN B 32 ? LEU B 49 ? ASN B 50 LEU B 67 1 ? 18 HELX_P HELX_P6 6 PRO B 50 ? LEU B 53 ? PRO B 68 LEU B 71 5 ? 4 HELX_P HELX_P7 7 ALA C 2 ? MET C 7 ? ALA C 20 MET C 25 1 ? 6 HELX_P HELX_P8 8 ALA C 16 ? ASN C 29 ? ALA C 34 ASN C 47 1 ? 14 HELX_P HELX_P9 9 ASN C 32 ? LEU C 49 ? ASN C 50 LEU C 67 1 ? 18 HELX_P HELX_P10 10 PRO C 50 ? LEU C 53 ? PRO C 68 LEU C 71 5 ? 4 HELX_P HELX_P11 11 ALA D 16 ? ASN D 29 ? ALA D 34 ASN D 47 1 ? 14 HELX_P HELX_P12 12 ASN D 32 ? LEU D 49 ? ASN D 50 LEU D 67 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? E DG 1 N1 ? ? ? 1_555 F DC 17 N3 ? ? E DG 1 F DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? E DG 1 N2 ? ? ? 1_555 F DC 17 O2 ? ? E DG 1 F DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? E DG 1 O6 ? ? ? 1_555 F DC 17 N4 ? ? E DG 1 F DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? E DG 1 N2 ? ? ? 1_555 H DG 18 N3 ? ? E DG 1 H DG 36 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog5 hydrog ? ? E DG 1 N3 ? ? ? 1_555 H DG 18 N2 ? ? E DG 1 H DG 36 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog6 hydrog ? ? E DA 2 N1 ? ? ? 1_555 F DT 16 N3 ? ? E DA 2 F DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? E DA 2 N6 ? ? ? 1_555 F DT 16 O4 ? ? E DA 2 F DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? E DA 3 N1 ? ? ? 1_555 F DT 15 N3 ? ? E DA 3 F DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? E DA 3 N6 ? ? ? 1_555 F DT 15 O4 ? ? E DA 3 F DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? E DT 4 N3 ? ? ? 1_555 F DA 14 N1 ? ? E DT 4 F DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? E DT 4 O4 ? ? ? 1_555 F DA 14 N6 ? ? E DT 4 F DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? E DC 5 N3 ? ? ? 1_555 F DG 13 N1 ? ? E DC 5 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? E DC 5 N4 ? ? ? 1_555 F DG 13 O6 ? ? E DC 5 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? E DC 5 O2 ? ? ? 1_555 F DG 13 N2 ? ? E DC 5 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? E DA 6 N1 ? ? ? 1_555 F DT 12 N3 ? ? E DA 6 F DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? E DA 6 N6 ? ? ? 1_555 F DT 12 O4 ? ? E DA 6 F DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? E DC 7 N3 ? ? ? 1_555 F DG 11 N1 ? ? E DC 7 F DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? E DC 7 N4 ? ? ? 1_555 F DG 11 O6 ? ? E DC 7 F DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? E DC 7 O2 ? ? ? 1_555 F DG 11 N2 ? ? E DC 7 F DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? E DA 8 N1 ? ? ? 1_555 F DT 10 N3 ? ? E DA 8 F DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? E DA 8 N6 ? ? ? 1_555 F DT 10 O4 ? ? E DA 8 F DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? E DA 9 N1 ? ? ? 1_555 F DT 9 N3 ? ? E DA 9 F DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? E DA 9 N6 ? ? ? 1_555 F DT 9 O4 ? ? E DA 9 F DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? E DG 10 N1 ? ? ? 1_555 F DC 8 N3 ? ? E DG 10 F DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? E DG 10 N2 ? ? ? 1_555 F DC 8 O2 ? ? E DG 10 F DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? E DG 10 O6 ? ? ? 1_555 F DC 8 N4 ? ? E DG 10 F DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? E DT 11 N3 ? ? ? 1_555 F DA 7 N1 ? ? E DT 11 F DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? E DT 11 O4 ? ? ? 1_555 F DA 7 N6 ? ? E DT 11 F DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? E DG 12 N1 ? ? ? 1_555 F DC 6 N3 ? ? E DG 12 F DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? E DG 12 N2 ? ? ? 1_555 F DC 6 O2 ? ? E DG 12 F DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? E DG 12 O6 ? ? ? 1_555 F DC 6 N4 ? ? E DG 12 F DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E DA 13 N1 ? ? ? 1_555 F DT 5 N3 ? ? E DA 13 F DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DA 13 N6 ? ? ? 1_555 F DT 5 O4 ? ? E DA 13 F DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DT 14 N3 ? ? ? 1_555 F DA 4 N1 ? ? E DT 14 F DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DT 14 O4 ? ? ? 1_555 F DA 4 N6 ? ? E DT 14 F DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DT 15 N3 ? ? ? 1_555 F DA 3 N1 ? ? E DT 15 F DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DT 15 O4 ? ? ? 1_555 F DA 3 N6 ? ? E DT 15 F DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DA 16 N1 ? ? ? 1_555 F DT 2 N3 ? ? E DA 16 F DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DA 16 N6 ? ? ? 1_555 F DT 2 O4 ? ? E DA 16 F DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DG 17 N1 ? ? ? 1_555 F DC 1 N3 ? ? E DG 17 F DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DG 17 N2 ? ? ? 1_555 F DC 1 O2 ? ? E DG 17 F DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DG 17 O6 ? ? ? 1_555 F DC 1 N4 ? ? E DG 17 F DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? F DG 18 N2 ? ? ? 1_555 G DG 1 N3 ? ? F DG 36 G DG 1 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog44 hydrog ? ? F DG 18 N3 ? ? ? 1_555 G DG 1 N2 ? ? F DG 36 G DG 1 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog45 hydrog ? ? G DG 1 N1 ? ? ? 1_555 H DC 17 N3 ? ? G DG 1 H DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? G DG 1 N2 ? ? ? 1_555 H DC 17 O2 ? ? G DG 1 H DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? G DG 1 O6 ? ? ? 1_555 H DC 17 N4 ? ? G DG 1 H DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? G DA 2 N1 ? ? ? 1_555 H DT 16 N3 ? ? G DA 2 H DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? G DA 2 N6 ? ? ? 1_555 H DT 16 O4 ? ? G DA 2 H DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? G DA 3 N1 ? ? ? 1_555 H DT 15 N3 ? ? G DA 3 H DT 33 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog51 hydrog ? ? G DT 4 N3 ? ? ? 1_555 H DA 14 N1 ? ? G DT 4 H DA 32 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? CA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel CA 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ASP A 9 ? ARG A 15 ? ASP A 27 ARG A 33 AA 2 ASP B 9 ? ARG B 15 ? ASP B 27 ARG B 33 CA 1 ASP C 9 ? ARG C 15 ? ASP C 27 ARG C 33 CA 2 ASP D 9 ? ARG D 15 ? ASP D 27 ARG D 33 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 14 ? N VAL A 32 O LYS B 10 ? O LYS B 28 CA 1 2 N VAL C 14 ? N VAL C 32 O LYS D 10 ? O LYS D 28 # _database_PDB_matrix.entry_id 2BNZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BNZ _atom_sites.fract_transf_matrix[1][1] 0.013159 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004066 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023527 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010090 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 19 ? ? ? A . n A 1 2 ALA 2 20 ? ? ? A . n A 1 3 LYS 3 21 ? ? ? A . n A 1 4 LYS 4 22 22 LYS LYS A . n A 1 5 ASP 5 23 23 ASP ASP A . n A 1 6 ILE 6 24 24 ILE ILE A . n A 1 7 MET 7 25 25 MET MET A . n A 1 8 GLY 8 26 26 GLY GLY A . n A 1 9 ASP 9 27 27 ASP ASP A . n A 1 10 LYS 10 28 28 LYS LYS A . n A 1 11 THR 11 29 29 THR THR A . n A 1 12 VAL 12 30 30 VAL VAL A . n A 1 13 ARG 13 31 31 ARG ARG A . n A 1 14 VAL 14 32 32 VAL VAL A . n A 1 15 ARG 15 33 33 ARG ARG A . n A 1 16 ALA 16 34 34 ALA ALA A . n A 1 17 ASP 17 35 35 ASP ASP A . n A 1 18 LEU 18 36 36 LEU LEU A . n A 1 19 HIS 19 37 37 HIS HIS A . n A 1 20 HIS 20 38 38 HIS HIS A . n A 1 21 ILE 21 39 39 ILE ILE A . n A 1 22 ILE 22 40 40 ILE ILE A . n A 1 23 LYS 23 41 41 LYS LYS A . n A 1 24 ILE 24 42 42 ILE ILE A . n A 1 25 GLU 25 43 43 GLU GLU A . n A 1 26 THR 26 44 44 THR THR A . n A 1 27 ALA 27 45 45 ALA ALA A . n A 1 28 LYS 28 46 46 LYS LYS A . n A 1 29 ASN 29 47 47 ASN ASN A . n A 1 30 GLY 30 48 48 GLY GLY A . n A 1 31 GLY 31 49 49 GLY GLY A . n A 1 32 ASN 32 50 50 ASN ASN A . n A 1 33 VAL 33 51 51 VAL VAL A . n A 1 34 LYS 34 52 52 LYS LYS A . n A 1 35 GLU 35 53 53 GLU GLU A . n A 1 36 VAL 36 54 54 VAL VAL A . n A 1 37 MET 37 55 55 MET MET A . n A 1 38 ASP 38 56 56 ASP ASP A . n A 1 39 GLN 39 57 57 GLN GLN A . n A 1 40 ALA 40 58 58 ALA ALA A . n A 1 41 LEU 41 59 59 LEU LEU A . n A 1 42 GLU 42 60 60 GLU GLU A . n A 1 43 GLU 43 61 61 GLU GLU A . n A 1 44 TYR 44 62 62 TYR TYR A . n A 1 45 ILE 45 63 63 ILE ILE A . n A 1 46 ARG 46 64 64 ARG ARG A . n A 1 47 LYS 47 65 65 LYS LYS A . n A 1 48 TYR 48 66 66 TYR TYR A . n A 1 49 LEU 49 67 67 LEU LEU A . n A 1 50 PRO 50 68 68 PRO PRO A . n A 1 51 ASP 51 69 69 ASP ASP A . n A 1 52 LYS 52 70 70 LYS LYS A . n A 1 53 LEU 53 71 71 LEU LEU A . n B 1 1 MET 1 19 ? ? ? B . n B 1 2 ALA 2 20 ? ? ? B . n B 1 3 LYS 3 21 ? ? ? B . n B 1 4 LYS 4 22 22 LYS LYS B . n B 1 5 ASP 5 23 23 ASP ASP B . n B 1 6 ILE 6 24 24 ILE ILE B . n B 1 7 MET 7 25 25 MET MET B . n B 1 8 GLY 8 26 26 GLY GLY B . n B 1 9 ASP 9 27 27 ASP ASP B . n B 1 10 LYS 10 28 28 LYS LYS B . n B 1 11 THR 11 29 29 THR THR B . n B 1 12 VAL 12 30 30 VAL VAL B . n B 1 13 ARG 13 31 31 ARG ARG B . n B 1 14 VAL 14 32 32 VAL VAL B . n B 1 15 ARG 15 33 33 ARG ARG B . n B 1 16 ALA 16 34 34 ALA ALA B . n B 1 17 ASP 17 35 35 ASP ASP B . n B 1 18 LEU 18 36 36 LEU LEU B . n B 1 19 HIS 19 37 37 HIS HIS B . n B 1 20 HIS 20 38 38 HIS HIS B . n B 1 21 ILE 21 39 39 ILE ILE B . n B 1 22 ILE 22 40 40 ILE ILE B . n B 1 23 LYS 23 41 41 LYS LYS B . n B 1 24 ILE 24 42 42 ILE ILE B . n B 1 25 GLU 25 43 43 GLU GLU B . n B 1 26 THR 26 44 44 THR THR B . n B 1 27 ALA 27 45 45 ALA ALA B . n B 1 28 LYS 28 46 46 LYS LYS B . n B 1 29 ASN 29 47 47 ASN ASN B . n B 1 30 GLY 30 48 48 GLY GLY B . n B 1 31 GLY 31 49 49 GLY GLY B . n B 1 32 ASN 32 50 50 ASN ASN B . n B 1 33 VAL 33 51 51 VAL VAL B . n B 1 34 LYS 34 52 52 LYS LYS B . n B 1 35 GLU 35 53 53 GLU GLU B . n B 1 36 VAL 36 54 54 VAL VAL B . n B 1 37 MET 37 55 55 MET MET B . n B 1 38 ASP 38 56 56 ASP ASP B . n B 1 39 GLN 39 57 57 GLN GLN B . n B 1 40 ALA 40 58 58 ALA ALA B . n B 1 41 LEU 41 59 59 LEU LEU B . n B 1 42 GLU 42 60 60 GLU GLU B . n B 1 43 GLU 43 61 61 GLU GLU B . n B 1 44 TYR 44 62 62 TYR TYR B . n B 1 45 ILE 45 63 63 ILE ILE B . n B 1 46 ARG 46 64 64 ARG ARG B . n B 1 47 LYS 47 65 65 LYS LYS B . n B 1 48 TYR 48 66 66 TYR TYR B . n B 1 49 LEU 49 67 67 LEU LEU B . n B 1 50 PRO 50 68 68 PRO PRO B . n B 1 51 ASP 51 69 69 ASP ASP B . n B 1 52 LYS 52 70 70 LYS LYS B . n B 1 53 LEU 53 71 71 LEU LEU B . n C 1 1 MET 1 19 ? ? ? C . n C 1 2 ALA 2 20 20 ALA ALA C . n C 1 3 LYS 3 21 21 LYS LYS C . n C 1 4 LYS 4 22 22 LYS LYS C . n C 1 5 ASP 5 23 23 ASP ASP C . n C 1 6 ILE 6 24 24 ILE ILE C . n C 1 7 MET 7 25 25 MET MET C . n C 1 8 GLY 8 26 26 GLY GLY C . n C 1 9 ASP 9 27 27 ASP ASP C . n C 1 10 LYS 10 28 28 LYS LYS C . n C 1 11 THR 11 29 29 THR THR C . n C 1 12 VAL 12 30 30 VAL VAL C . n C 1 13 ARG 13 31 31 ARG ARG C . n C 1 14 VAL 14 32 32 VAL VAL C . n C 1 15 ARG 15 33 33 ARG ARG C . n C 1 16 ALA 16 34 34 ALA ALA C . n C 1 17 ASP 17 35 35 ASP ASP C . n C 1 18 LEU 18 36 36 LEU LEU C . n C 1 19 HIS 19 37 37 HIS HIS C . n C 1 20 HIS 20 38 38 HIS HIS C . n C 1 21 ILE 21 39 39 ILE ILE C . n C 1 22 ILE 22 40 40 ILE ILE C . n C 1 23 LYS 23 41 41 LYS LYS C . n C 1 24 ILE 24 42 42 ILE ILE C . n C 1 25 GLU 25 43 43 GLU GLU C . n C 1 26 THR 26 44 44 THR THR C . n C 1 27 ALA 27 45 45 ALA ALA C . n C 1 28 LYS 28 46 46 LYS LYS C . n C 1 29 ASN 29 47 47 ASN ASN C . n C 1 30 GLY 30 48 48 GLY GLY C . n C 1 31 GLY 31 49 49 GLY GLY C . n C 1 32 ASN 32 50 50 ASN ASN C . n C 1 33 VAL 33 51 51 VAL VAL C . n C 1 34 LYS 34 52 52 LYS LYS C . n C 1 35 GLU 35 53 53 GLU GLU C . n C 1 36 VAL 36 54 54 VAL VAL C . n C 1 37 MET 37 55 55 MET MET C . n C 1 38 ASP 38 56 56 ASP ASP C . n C 1 39 GLN 39 57 57 GLN GLN C . n C 1 40 ALA 40 58 58 ALA ALA C . n C 1 41 LEU 41 59 59 LEU LEU C . n C 1 42 GLU 42 60 60 GLU GLU C . n C 1 43 GLU 43 61 61 GLU GLU C . n C 1 44 TYR 44 62 62 TYR TYR C . n C 1 45 ILE 45 63 63 ILE ILE C . n C 1 46 ARG 46 64 64 ARG ARG C . n C 1 47 LYS 47 65 65 LYS LYS C . n C 1 48 TYR 48 66 66 TYR TYR C . n C 1 49 LEU 49 67 67 LEU LEU C . n C 1 50 PRO 50 68 68 PRO PRO C . n C 1 51 ASP 51 69 69 ASP ASP C . n C 1 52 LYS 52 70 70 LYS LYS C . n C 1 53 LEU 53 71 71 LEU LEU C . n D 1 1 MET 1 19 ? ? ? D . n D 1 2 ALA 2 20 ? ? ? D . n D 1 3 LYS 3 21 ? ? ? D . n D 1 4 LYS 4 22 ? ? ? D . n D 1 5 ASP 5 23 ? ? ? D . n D 1 6 ILE 6 24 ? ? ? D . n D 1 7 MET 7 25 25 MET MET D . n D 1 8 GLY 8 26 26 GLY GLY D . n D 1 9 ASP 9 27 27 ASP ASP D . n D 1 10 LYS 10 28 28 LYS LYS D . n D 1 11 THR 11 29 29 THR THR D . n D 1 12 VAL 12 30 30 VAL VAL D . n D 1 13 ARG 13 31 31 ARG ARG D . n D 1 14 VAL 14 32 32 VAL VAL D . n D 1 15 ARG 15 33 33 ARG ARG D . n D 1 16 ALA 16 34 34 ALA ALA D . n D 1 17 ASP 17 35 35 ASP ASP D . n D 1 18 LEU 18 36 36 LEU LEU D . n D 1 19 HIS 19 37 37 HIS HIS D . n D 1 20 HIS 20 38 38 HIS HIS D . n D 1 21 ILE 21 39 39 ILE ILE D . n D 1 22 ILE 22 40 40 ILE ILE D . n D 1 23 LYS 23 41 41 LYS LYS D . n D 1 24 ILE 24 42 42 ILE ILE D . n D 1 25 GLU 25 43 43 GLU GLU D . n D 1 26 THR 26 44 44 THR THR D . n D 1 27 ALA 27 45 45 ALA ALA D . n D 1 28 LYS 28 46 46 LYS LYS D . n D 1 29 ASN 29 47 47 ASN ASN D . n D 1 30 GLY 30 48 48 GLY GLY D . n D 1 31 GLY 31 49 49 GLY GLY D . n D 1 32 ASN 32 50 50 ASN ASN D . n D 1 33 VAL 33 51 51 VAL VAL D . n D 1 34 LYS 34 52 52 LYS LYS D . n D 1 35 GLU 35 53 53 GLU GLU D . n D 1 36 VAL 36 54 54 VAL VAL D . n D 1 37 MET 37 55 55 MET MET D . n D 1 38 ASP 38 56 56 ASP ASP D . n D 1 39 GLN 39 57 57 GLN GLN D . n D 1 40 ALA 40 58 58 ALA ALA D . n D 1 41 LEU 41 59 59 LEU LEU D . n D 1 42 GLU 42 60 60 GLU GLU D . n D 1 43 GLU 43 61 61 GLU GLU D . n D 1 44 TYR 44 62 62 TYR TYR D . n D 1 45 ILE 45 63 63 ILE ILE D . n D 1 46 ARG 46 64 64 ARG ARG D . n D 1 47 LYS 47 65 65 LYS LYS D . n D 1 48 TYR 48 66 66 TYR TYR D . n D 1 49 LEU 49 67 67 LEU LEU D . n D 1 50 PRO 50 68 68 PRO PRO D . n D 1 51 ASP 51 69 69 ASP ASP D . n D 1 52 LYS 52 70 70 LYS LYS D . n D 1 53 LEU 53 71 71 LEU LEU D . n E 2 1 DG 1 1 1 DG DG E . n E 2 2 DA 2 2 2 DA DA E . n E 2 3 DA 3 3 3 DA DA E . n E 2 4 DT 4 4 4 DT DT E . n E 2 5 DC 5 5 5 DC DC E . n E 2 6 DA 6 6 6 DA DA E . n E 2 7 DC 7 7 7 DC DC E . n E 2 8 DA 8 8 8 DA DA E . n E 2 9 DA 9 9 9 DA DA E . n E 2 10 DG 10 10 10 DG DG E . n E 2 11 DT 11 11 11 DT DT E . n E 2 12 DG 12 12 12 DG DG E . n E 2 13 DA 13 13 13 DA DA E . n E 2 14 DT 14 14 14 DT DT E . n E 2 15 DT 15 15 15 DT DT E . n E 2 16 DA 16 16 16 DA DA E . n E 2 17 DG 17 17 17 DG DG E . n E 2 18 DC 18 18 ? ? ? E . n F 3 1 DC 1 19 19 DC DC F . n F 3 2 DT 2 20 20 DT DT F . n F 3 3 DA 3 21 21 DA DA F . n F 3 4 DA 4 22 22 DA DA F . n F 3 5 DT 5 23 23 DT DT F . n F 3 6 DC 6 24 24 DC DC F . n F 3 7 DA 7 25 25 DA DA F . n F 3 8 DC 8 26 26 DC DC F . n F 3 9 DT 9 27 27 DT DT F . n F 3 10 DT 10 28 28 DT DT F . n F 3 11 DG 11 29 29 DG DG F . n F 3 12 DT 12 30 30 DT DT F . n F 3 13 DG 13 31 31 DG DG F . n F 3 14 DA 14 32 32 DA DA F . n F 3 15 DT 15 33 33 DT DT F . n F 3 16 DT 16 34 34 DT DT F . n F 3 17 DC 17 35 35 DC DC F . n F 3 18 DG 18 36 36 DG DG F . n G 2 1 DG 1 1 1 DG DG G . n G 2 2 DA 2 2 2 DA DA G . n G 2 3 DA 3 3 3 DA DA G . n G 2 4 DT 4 4 4 DT DT G . n G 2 5 DC 5 12 ? ? ? G . n G 2 6 DA 6 13 ? ? ? G . n G 2 7 DC 7 14 ? ? ? G . n G 2 8 DA 8 15 ? ? ? G . n G 2 9 DA 9 16 ? ? ? G . n G 2 10 DG 10 17 17 DG DG G . n G 2 11 DT 11 18 ? ? ? G . n G 2 12 DG 12 19 ? ? ? G . n G 2 13 DA 13 20 ? ? ? G . n G 2 14 DT 14 21 ? ? ? G . n G 2 15 DT 15 22 ? ? ? G . n G 2 16 DA 16 23 ? ? ? G . n G 2 17 DG 17 24 ? ? ? G . n G 2 18 DC 18 25 ? ? ? G . n H 3 1 DC 1 19 ? ? ? H . n H 3 2 DT 2 20 ? ? ? H . n H 3 3 DA 3 21 ? ? ? H . n H 3 4 DA 4 22 ? ? ? H . n H 3 5 DT 5 23 ? ? ? H . n H 3 6 DC 6 24 ? ? ? H . n H 3 7 DA 7 25 ? ? ? H . n H 3 8 DC 8 26 ? ? ? H . n H 3 9 DT 9 27 ? ? ? H . n H 3 10 DT 10 28 ? ? ? H . n H 3 11 DG 11 29 ? ? ? H . n H 3 12 DT 12 30 ? ? ? H . n H 3 13 DG 13 31 ? ? ? H . n H 3 14 DA 14 32 32 DA DA H . n H 3 15 DT 15 33 33 DT DT H . n H 3 16 DT 16 34 34 DT DT H . n H 3 17 DC 17 35 35 DC DC H . n H 3 18 DG 18 36 36 DG DG H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 HOH 1 2001 2001 HOH HOH A . I 4 HOH 2 2002 2002 HOH HOH A . I 4 HOH 3 2003 2003 HOH HOH A . J 4 HOH 1 2001 2001 HOH HOH B . J 4 HOH 2 2002 2002 HOH HOH B . J 4 HOH 3 2003 2003 HOH HOH B . J 4 HOH 4 2004 2004 HOH HOH B . J 4 HOH 5 2005 2005 HOH HOH B . J 4 HOH 6 2006 2006 HOH HOH B . J 4 HOH 7 2007 2007 HOH HOH B . J 4 HOH 8 2008 2008 HOH HOH B . J 4 HOH 9 2009 2009 HOH HOH B . J 4 HOH 10 2010 2010 HOH HOH B . K 4 HOH 1 2001 2001 HOH HOH C . K 4 HOH 2 2002 2002 HOH HOH C . K 4 HOH 3 2003 2003 HOH HOH C . K 4 HOH 4 2004 2004 HOH HOH C . K 4 HOH 5 2005 2005 HOH HOH C . K 4 HOH 6 2006 2006 HOH HOH C . K 4 HOH 7 2007 2007 HOH HOH C . K 4 HOH 8 2008 2008 HOH HOH C . K 4 HOH 9 2009 2009 HOH HOH C . L 4 HOH 1 2001 2001 HOH HOH D . L 4 HOH 2 2002 2002 HOH HOH D . L 4 HOH 3 2003 2003 HOH HOH D . M 4 HOH 1 2001 2001 HOH HOH E . M 4 HOH 2 2002 2002 HOH HOH E . M 4 HOH 3 2003 2003 HOH HOH E . M 4 HOH 4 2004 2004 HOH HOH E . M 4 HOH 5 2005 2005 HOH HOH E . M 4 HOH 6 2006 2006 HOH HOH E . M 4 HOH 7 2007 2007 HOH HOH E . M 4 HOH 8 2008 2008 HOH HOH E . M 4 HOH 9 2009 2009 HOH HOH E . N 4 HOH 1 2001 2001 HOH HOH F . N 4 HOH 2 2002 2002 HOH HOH F . N 4 HOH 3 2003 2003 HOH HOH F . N 4 HOH 4 2004 2004 HOH HOH F . N 4 HOH 5 2005 2005 HOH HOH F . N 4 HOH 6 2006 2006 HOH HOH F . N 4 HOH 7 2007 2007 HOH HOH F . N 4 HOH 8 2008 2008 HOH HOH F . N 4 HOH 9 2009 2009 HOH HOH F . N 4 HOH 10 2010 2010 HOH HOH F . O 4 HOH 1 2001 2001 HOH HOH H . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12840 ? 1 MORE -104.2 ? 1 'SSA (A^2)' 15160 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2015-10-21 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Other 4 3 'Structure model' 'Source and taxonomy' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' Other 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -11.7706 -13.0601 -2.2275 -0.0533 -0.0834 0.0287 -0.0011 -0.0088 0.0317 2.4214 0.8484 1.1087 0.0862 -0.4518 0.3186 -0.1025 -0.0442 -0.0570 -0.0003 0.0593 0.0127 0.0301 0.0366 0.0431 'X-RAY DIFFRACTION' 2 ? refined -9.4437 -19.7056 0.8256 -0.0425 -0.0456 0.0116 0.0294 0.0334 0.0129 1.4921 1.7929 0.5507 -0.1307 -0.4571 -0.8153 -0.1373 -0.1088 -0.1180 -0.0515 0.1765 -0.0885 0.2074 -0.0539 -0.0392 'X-RAY DIFFRACTION' 3 ? refined -32.7993 2.2285 12.2330 -0.0835 -0.0381 -0.0227 0.0402 -0.0122 -0.0223 1.7414 3.1371 1.1969 -0.9244 0.0054 0.6820 -0.1447 -0.2663 -0.0144 0.1131 0.0843 0.0168 0.0171 0.0876 0.0604 'X-RAY DIFFRACTION' 4 ? refined -40.1214 -0.0091 11.7257 -0.0928 -0.0759 -0.0561 0.0232 0.0193 0.0192 4.7769 4.2141 2.3797 0.0582 0.0258 2.6243 -0.0378 -0.1026 0.0817 0.0936 0.0820 0.0793 0.1904 -0.0060 -0.0442 'X-RAY DIFFRACTION' 5 ? refined -17.5503 1.9413 4.6985 -0.1130 -0.0335 -0.0268 -0.0104 -0.0163 -0.0138 1.6400 1.1384 4.7785 -1.3528 -2.2065 1.6186 -0.0111 -0.1178 0.0360 -0.0067 0.0572 -0.1418 -0.1179 0.0202 -0.0460 'X-RAY DIFFRACTION' 6 ? refined -18.9119 2.2400 4.0972 -0.0929 -0.1197 -0.0379 0.0023 -0.0114 0.0117 2.1353 1.4735 4.3810 -0.6071 -1.4997 1.6292 -0.0236 -0.1379 0.0798 -0.0230 0.0852 -0.1519 -0.0767 0.1700 -0.0616 'X-RAY DIFFRACTION' 7 ? refined -8.0201 -8.1992 -19.3437 0.2096 0.2299 -0.1959 -0.0690 0.0574 0.0640 3.4902 1.2736 6.1415 -1.0287 -4.2756 0.3236 0.2926 0.2465 0.3769 -0.4101 0.0470 -0.2294 -0.1466 0.1533 -0.3396 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 24 ? ? A 50 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 B 24 ? ? B 50 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 51 ? ? A 67 ? ? ? ? 'X-RAY DIFFRACTION' 4 2 B 51 ? ? B 67 ? ? ? ? 'X-RAY DIFFRACTION' 5 3 C 24 ? ? C 50 ? ? ? ? 'X-RAY DIFFRACTION' 6 3 D 24 ? ? D 50 ? ? ? ? 'X-RAY DIFFRACTION' 7 4 C 51 ? ? C 67 ? ? ? ? 'X-RAY DIFFRACTION' 8 4 D 51 ? ? D 67 ? ? ? ? 'X-RAY DIFFRACTION' 9 5 E 1 ? ? E 17 ? ? ? ? 'X-RAY DIFFRACTION' 10 6 F 21 ? ? F 36 ? ? ? ? 'X-RAY DIFFRACTION' 11 7 G 2 ? ? G 17 ? ? ? ? 'X-RAY DIFFRACTION' 12 7 H 34 ? ? H 38 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0003 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 2BNZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;19 N-TERMINAL RESIDUES TRUNCATED, NEW N-TERMINAL MET19 IS A CLONING ARTEFACT ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 23 ? ? CG A ASP 23 ? ? OD2 A ASP 23 ? ? 123.91 118.30 5.61 0.90 N 2 1 CB B ASP 69 ? ? CG B ASP 69 ? ? OD2 B ASP 69 ? ? 123.76 118.30 5.46 0.90 N 3 1 "O4'" F DC 19 ? ? "C1'" F DC 19 ? ? N1 F DC 19 ? ? 110.14 108.30 1.84 0.30 N 4 1 "O4'" F DT 20 ? ? "C1'" F DT 20 ? ? N1 F DT 20 ? ? 110.55 108.30 2.25 0.30 N 5 1 "O4'" F DT 30 ? ? "C1'" F DT 30 ? ? N1 F DT 30 ? ? 111.51 108.30 3.21 0.30 N 6 1 "O4'" F DG 36 ? ? "C1'" F DG 36 ? ? N9 F DG 36 ? ? 111.00 108.30 2.70 0.30 N 7 1 "O4'" G DG 1 ? ? "C1'" G DG 1 ? ? N9 G DG 1 ? ? 112.01 108.30 3.71 0.30 N 8 1 "O4'" G DG 17 ? ? "C1'" G DG 17 ? ? N9 G DG 17 ? ? 110.13 108.30 1.83 0.30 N 9 1 "O4'" H DT 33 ? ? "C1'" H DT 33 ? ? N1 H DT 33 ? ? 111.11 108.30 2.81 0.30 N 10 1 "O4'" H DT 34 ? ? "C1'" H DT 34 ? ? N1 H DT 34 ? ? 110.15 108.30 1.85 0.30 N 11 1 "O4'" H DC 35 ? ? "C1'" H DC 35 ? ? N1 H DC 35 ? ? 110.92 108.30 2.62 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 25 ? ? 157.06 118.33 2 1 ARG B 33 ? ? -23.68 121.20 3 1 ASN B 47 ? ? -106.35 -134.86 4 1 LEU B 67 ? ? -141.03 50.12 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 19 ? A MET 1 2 1 Y 1 A ALA 20 ? A ALA 2 3 1 Y 1 A LYS 21 ? A LYS 3 4 1 Y 1 B MET 19 ? B MET 1 5 1 Y 1 B ALA 20 ? B ALA 2 6 1 Y 1 B LYS 21 ? B LYS 3 7 1 Y 1 C MET 19 ? C MET 1 8 1 Y 1 D MET 19 ? D MET 1 9 1 Y 1 D ALA 20 ? D ALA 2 10 1 Y 1 D LYS 21 ? D LYS 3 11 1 Y 1 D LYS 22 ? D LYS 4 12 1 Y 1 D ASP 23 ? D ASP 5 13 1 Y 1 D ILE 24 ? D ILE 6 14 1 Y 1 E DC 18 ? E DC 18 15 1 Y 1 G DC 12 ? G DC 5 16 1 Y 1 G DA 13 ? G DA 6 17 1 Y 1 G DC 14 ? G DC 7 18 1 Y 1 G DA 15 ? G DA 8 19 1 Y 1 G DA 16 ? G DA 9 20 1 Y 1 G DT 18 ? G DT 11 21 1 Y 1 G DG 19 ? G DG 12 22 1 Y 1 G DA 20 ? G DA 13 23 1 Y 1 G DT 21 ? G DT 14 24 1 Y 1 G DT 22 ? G DT 15 25 1 Y 1 G DA 23 ? G DA 16 26 1 Y 1 G DG 24 ? G DG 17 27 1 Y 1 G DC 25 ? G DC 18 28 1 Y 1 H DC 19 ? H DC 1 29 1 Y 1 H DT 20 ? H DT 2 30 1 Y 1 H DA 21 ? H DA 3 31 1 Y 1 H DA 22 ? H DA 4 32 1 Y 1 H DT 23 ? H DT 5 33 1 Y 1 H DC 24 ? H DC 6 34 1 Y 1 H DA 25 ? H DA 7 35 1 Y 1 H DC 26 ? H DC 8 36 1 Y 1 H DT 27 ? H DT 9 37 1 Y 1 H DT 28 ? H DT 10 38 1 Y 1 H DG 29 ? H DG 11 39 1 Y 1 H DT 30 ? H DT 12 40 1 Y 1 H DG 31 ? H DG 13 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PRO N N N N 379 PRO CA C N S 380 PRO C C N N 381 PRO O O N N 382 PRO CB C N N 383 PRO CG C N N 384 PRO CD C N N 385 PRO OXT O N N 386 PRO H H N N 387 PRO HA H N N 388 PRO HB2 H N N 389 PRO HB3 H N N 390 PRO HG2 H N N 391 PRO HG3 H N N 392 PRO HD2 H N N 393 PRO HD3 H N N 394 PRO HXT H N N 395 THR N N N N 396 THR CA C N S 397 THR C C N N 398 THR O O N N 399 THR CB C N R 400 THR OG1 O N N 401 THR CG2 C N N 402 THR OXT O N N 403 THR H H N N 404 THR H2 H N N 405 THR HA H N N 406 THR HB H N N 407 THR HG1 H N N 408 THR HG21 H N N 409 THR HG22 H N N 410 THR HG23 H N N 411 THR HXT H N N 412 TYR N N N N 413 TYR CA C N S 414 TYR C C N N 415 TYR O O N N 416 TYR CB C N N 417 TYR CG C Y N 418 TYR CD1 C Y N 419 TYR CD2 C Y N 420 TYR CE1 C Y N 421 TYR CE2 C Y N 422 TYR CZ C Y N 423 TYR OH O N N 424 TYR OXT O N N 425 TYR H H N N 426 TYR H2 H N N 427 TYR HA H N N 428 TYR HB2 H N N 429 TYR HB3 H N N 430 TYR HD1 H N N 431 TYR HD2 H N N 432 TYR HE1 H N N 433 TYR HE2 H N N 434 TYR HH H N N 435 TYR HXT H N N 436 VAL N N N N 437 VAL CA C N S 438 VAL C C N N 439 VAL O O N N 440 VAL CB C N N 441 VAL CG1 C N N 442 VAL CG2 C N N 443 VAL OXT O N N 444 VAL H H N N 445 VAL H2 H N N 446 VAL HA H N N 447 VAL HB H N N 448 VAL HG11 H N N 449 VAL HG12 H N N 450 VAL HG13 H N N 451 VAL HG21 H N N 452 VAL HG22 H N N 453 VAL HG23 H N N 454 VAL HXT H N N 455 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TYR N CA sing N N 406 TYR N H sing N N 407 TYR N H2 sing N N 408 TYR CA C sing N N 409 TYR CA CB sing N N 410 TYR CA HA sing N N 411 TYR C O doub N N 412 TYR C OXT sing N N 413 TYR CB CG sing N N 414 TYR CB HB2 sing N N 415 TYR CB HB3 sing N N 416 TYR CG CD1 doub Y N 417 TYR CG CD2 sing Y N 418 TYR CD1 CE1 sing Y N 419 TYR CD1 HD1 sing N N 420 TYR CD2 CE2 doub Y N 421 TYR CD2 HD2 sing N N 422 TYR CE1 CZ doub Y N 423 TYR CE1 HE1 sing N N 424 TYR CE2 CZ sing Y N 425 TYR CE2 HE2 sing N N 426 TYR CZ OH sing N N 427 TYR OH HH sing N N 428 TYR OXT HXT sing N N 429 VAL N CA sing N N 430 VAL N H sing N N 431 VAL N H2 sing N N 432 VAL CA C sing N N 433 VAL CA CB sing N N 434 VAL CA HA sing N N 435 VAL C O doub N N 436 VAL C OXT sing N N 437 VAL CB CG1 sing N N 438 VAL CB CG2 sing N N 439 VAL CB HB sing N N 440 VAL CG1 HG11 sing N N 441 VAL CG1 HG12 sing N N 442 VAL CG1 HG13 sing N N 443 VAL CG2 HG21 sing N N 444 VAL CG2 HG22 sing N N 445 VAL CG2 HG23 sing N N 446 VAL OXT HXT sing N N 447 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2BNZ 'double helix' 2BNZ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 F DC 1 1_555 E DG 17 1_555 -1.125 0.355 0.551 1.288 -20.867 2.927 1 F_DC19:DG17_E F 19 ? E 17 ? 19 1 1 F DT 2 1_555 E DA 16 1_555 -0.166 0.297 -0.277 10.300 -18.426 8.255 2 F_DT20:DA16_E F 20 ? E 16 ? 20 1 1 F DA 3 1_555 E DT 15 1_555 0.188 -0.067 -0.163 2.123 -14.595 -0.833 3 F_DA21:DT15_E F 21 ? E 15 ? 20 1 1 F DA 4 1_555 E DT 14 1_555 0.068 -0.200 0.316 1.263 -9.074 3.417 4 F_DA22:DT14_E F 22 ? E 14 ? 20 1 1 F DT 5 1_555 E DA 13 1_555 -0.153 -0.210 0.061 0.388 -8.466 0.992 5 F_DT23:DA13_E F 23 ? E 13 ? 20 1 1 F DC 6 1_555 E DG 12 1_555 0.266 -0.206 -0.026 -4.932 -16.059 1.729 6 F_DC24:DG12_E F 24 ? E 12 ? 19 1 1 F DA 7 1_555 E DT 11 1_555 0.083 -0.135 -0.028 4.607 2.074 1.397 7 F_DA25:DT11_E F 25 ? E 11 ? 20 1 1 F DC 8 1_555 E DG 10 1_555 0.065 -0.236 0.119 5.022 -7.016 -1.372 8 F_DC26:DG10_E F 26 ? E 10 ? 19 1 1 F DT 9 1_555 E DA 9 1_555 -0.656 -0.393 0.164 -6.912 -13.240 -3.327 9 F_DT27:DA9_E F 27 ? E 9 ? 20 1 1 F DT 10 1_555 E DA 8 1_555 0.031 -0.455 0.076 -5.873 -10.408 1.143 10 F_DT28:DA8_E F 28 ? E 8 ? 20 1 1 F DG 11 1_555 E DC 7 1_555 -0.118 -0.316 -0.011 -18.870 -6.562 0.605 11 F_DG29:DC7_E F 29 ? E 7 ? 19 1 1 F DT 12 1_555 E DA 6 1_555 -0.191 -0.291 -0.207 -0.024 0.175 0.654 12 F_DT30:DA6_E F 30 ? E 6 ? 20 1 1 F DG 13 1_555 E DC 5 1_555 -0.320 -0.102 0.270 8.706 -11.017 1.150 13 F_DG31:DC5_E F 31 ? E 5 ? 19 1 1 F DA 14 1_555 E DT 4 1_555 -0.035 -0.206 0.395 4.874 -14.553 2.802 14 F_DA32:DT4_E F 32 ? E 4 ? 20 1 1 F DT 15 1_555 E DA 3 1_555 0.131 -0.150 0.278 1.808 -14.695 1.470 15 F_DT33:DA3_E F 33 ? E 3 ? 20 1 1 F DT 16 1_555 E DA 2 1_555 -0.063 -0.181 0.105 -7.629 -12.218 0.608 16 F_DT34:DA2_E F 34 ? E 2 ? 20 1 1 F DC 17 1_555 E DG 1 1_555 -0.320 -0.200 -0.260 15.429 -10.970 0.468 17 F_DC35:DG1_E F 35 ? E 1 ? 19 1 1 G DG 1 1_555 H DC 17 1_555 -1.444 -0.486 -1.107 -2.045 -5.377 -1.435 18 G_DG1:DC35_H G 1 ? H 35 ? 19 1 1 G DA 2 1_555 H DT 16 1_555 -1.198 0.305 -0.479 4.963 -12.300 -0.351 19 G_DA2:DT34_H G 2 ? H 34 ? 20 1 1 G DA 3 1_555 H DT 15 1_555 0.731 0.110 0.762 11.774 -26.120 15.471 20 G_DA3:DT33_H G 3 ? H 33 ? ? 1 1 G DT 4 1_555 H DA 14 1_555 -0.625 0.374 -1.043 19.176 -40.601 24.393 21 G_DT4:DA32_H G 4 ? H 32 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 F DC 1 1_555 E DG 17 1_555 F DT 2 1_555 E DA 16 1_555 0.622 -0.027 3.355 7.324 -1.890 36.584 0.218 0.039 3.410 -2.972 -11.517 37.331 1 FF_DC19DT20:DA16DG17_EE F 19 ? E 17 ? F 20 ? E 16 ? 1 F DT 2 1_555 E DA 16 1_555 F DA 3 1_555 E DT 15 1_555 -0.096 0.638 3.571 2.194 0.659 45.697 0.758 0.332 3.571 0.847 -2.823 45.751 2 FF_DT20DA21:DT15DA16_EE F 20 ? E 16 ? F 21 ? E 15 ? 1 F DA 3 1_555 E DT 15 1_555 F DA 4 1_555 E DT 14 1_555 0.474 -0.454 3.161 -4.794 -1.278 35.038 -0.566 -1.458 3.086 -2.110 7.913 35.377 3 FF_DA21DA22:DT14DT15_EE F 21 ? E 15 ? F 22 ? E 14 ? 1 F DA 4 1_555 E DT 14 1_555 F DT 5 1_555 E DA 13 1_555 -0.250 -0.871 3.327 1.867 -4.917 30.252 -0.643 0.852 3.401 -9.332 -3.544 30.695 4 FF_DA22DT23:DA13DT14_EE F 22 ? E 14 ? F 23 ? E 13 ? 1 F DT 5 1_555 E DA 13 1_555 F DC 6 1_555 E DG 12 1_555 -0.031 -0.273 3.294 2.513 -6.728 41.730 0.319 0.304 3.290 -9.361 -3.496 42.316 5 FF_DT23DC24:DG12DA13_EE F 23 ? E 13 ? F 24 ? E 12 ? 1 F DC 6 1_555 E DG 12 1_555 F DA 7 1_555 E DT 11 1_555 1.040 1.328 3.382 0.993 -5.824 38.691 2.689 -1.433 3.182 -8.728 -1.488 39.122 6 FF_DC24DA25:DT11DG12_EE F 24 ? E 12 ? F 25 ? E 11 ? 1 F DA 7 1_555 E DT 11 1_555 F DC 8 1_555 E DG 10 1_555 -0.900 -0.251 3.282 -3.084 0.716 31.400 -0.596 1.073 3.346 1.318 5.680 31.555 7 FF_DA25DC26:DG10DT11_EE F 25 ? E 11 ? F 26 ? E 10 ? 1 F DC 8 1_555 E DG 10 1_555 F DT 9 1_555 E DA 9 1_555 -0.037 -1.419 3.408 1.378 -0.993 35.697 -2.162 0.268 3.441 -1.618 -2.246 35.736 8 FF_DC26DT27:DA9DG10_EE F 26 ? E 10 ? F 27 ? E 9 ? 1 F DT 9 1_555 E DA 9 1_555 F DT 10 1_555 E DA 8 1_555 0.216 -0.343 3.291 0.278 -4.041 40.685 -0.042 -0.279 3.310 -5.795 -0.398 40.877 9 FF_DT27DT28:DA8DA9_EE F 27 ? E 9 ? F 28 ? E 8 ? 1 F DT 10 1_555 E DA 8 1_555 F DG 11 1_555 E DC 7 1_555 0.169 -0.218 3.570 -1.536 -0.293 40.299 -0.281 -0.433 3.563 -0.425 2.229 40.328 10 FF_DT28DG29:DC7DA8_EE F 28 ? E 8 ? F 29 ? E 7 ? 1 F DG 11 1_555 E DC 7 1_555 F DT 12 1_555 E DA 6 1_555 -0.068 -0.081 2.981 2.150 -1.403 23.678 0.223 0.808 2.962 -3.407 -5.219 23.815 11 FF_DG29DT30:DA6DC7_EE F 29 ? E 7 ? F 30 ? E 6 ? 1 F DT 12 1_555 E DA 6 1_555 F DG 13 1_555 E DC 5 1_555 -0.314 1.798 3.461 -0.925 -10.789 41.976 3.485 0.336 2.939 -14.768 1.266 43.289 12 FF_DT30DG31:DC5DA6_EE F 30 ? E 6 ? F 31 ? E 5 ? 1 F DG 13 1_555 E DC 5 1_555 F DA 14 1_555 E DT 4 1_555 0.437 -0.199 3.353 0.175 -1.656 38.579 -0.091 -0.639 3.360 -2.505 -0.265 38.614 13 FF_DG31DA32:DT4DC5_EE F 31 ? E 5 ? F 32 ? E 4 ? 1 F DA 14 1_555 E DT 4 1_555 F DT 15 1_555 E DA 3 1_555 0.332 -0.993 3.397 0.779 -4.505 33.053 -0.937 -0.442 3.505 -7.871 -1.362 33.359 14 FF_DA32DT33:DA3DT4_EE F 32 ? E 4 ? F 33 ? E 3 ? 1 F DT 15 1_555 E DA 3 1_555 F DT 16 1_555 E DA 2 1_555 -0.047 -0.653 3.388 2.969 0.522 34.637 -1.175 0.547 3.363 0.875 -4.976 34.764 15 FF_DT33DT34:DA2DA3_EE F 33 ? E 3 ? F 34 ? E 2 ? 1 F DT 16 1_555 E DA 2 1_555 F DC 17 1_555 E DG 1 1_555 0.332 -0.061 2.776 -0.627 1.127 33.717 -0.259 -0.659 2.766 1.942 1.081 33.741 16 FF_DT34DC35:DG1DA2_EE F 34 ? E 2 ? F 35 ? E 1 ? 1 F DC 17 1_555 E DG 1 1_555 G DG 1 1_555 H DC 17 1_555 -0.020 -5.186 4.441 2.824 -16.534 -121.031 3.165 0.022 4.006 9.476 1.618 -121.723 17 FG_DC35DG1:DC35DG1_HE F 35 ? E 1 ? G 1 ? H 35 ? 1 G DG 1 1_555 H DC 17 1_555 G DA 2 1_555 H DT 16 1_555 -0.486 0.429 3.055 -8.347 10.885 35.407 -0.696 -0.293 3.085 17.124 13.132 37.892 18 GG_DG1DA2:DT34DC35_HH G 1 ? H 35 ? G 2 ? H 34 ? 1 G DA 2 1_555 H DT 16 1_555 G DA 3 1_555 H DT 15 1_555 0.476 0.566 2.931 -2.660 -2.467 51.051 0.806 -0.714 2.876 -2.858 3.081 51.171 19 GG_DA2DA3:DT33DT34_HH G 2 ? H 34 ? G 3 ? H 33 ? 1 G DA 3 1_555 H DT 15 1_555 G DT 4 1_555 H DA 14 1_555 -0.267 0.025 2.896 13.417 -0.028 26.339 0.054 3.009 2.472 -0.056 -27.306 29.505 20 GG_DA3DT4:DA32DT33_HH G 3 ? H 33 ? G 4 ? H 32 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2BNW _pdbx_initial_refinement_model.details 'PDB ENTRY 2BNW' #