HEADER REGULATION 08-AUG-05 2BYV TITLE STRUCTURE OF THE CAMP RESPONSIVE EXCHANGE FACTOR EPAC2 IN ITS AUTO- TITLE 2 INHIBITED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAP GUANINE NUCLEOTIDE EXCHANGE FACTOR 4; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: CAMP-REGULATED GUANINE NUCLEOTIDE EXCHANGE FACTOR II, CAMP- COMPND 5 GEFII, EXCHANGE FACTOR DIRECTLY ACTIVATED BY CAMP 2, EPAC 2, CAMP- COMPND 6 DEPENDENT RAP1 GUANINE-NUCLEOTIDE EXCHANGE FACTOR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: CK600K; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX4T KEYWDS EPAC2, CAMP-GEF2, CAMP, CYCLIC NUCLEOTIDE, GEF, EXCHANGE FACTOR, KEYWDS 2 REGULATION, AUTO-INHIBITION, CDC25 HOMOLOGY DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR H.REHMANN,A.WITTINGHOFER,J.L.BOS REVDAT 3 13-DEC-23 2BYV 1 REMARK REVDAT 2 24-FEB-09 2BYV 1 VERSN REVDAT 1 02-FEB-06 2BYV 0 JRNL AUTH H.REHMANN,J.DAS,P.KNIPSCHEER,A.WITTINGHOFER,J.L.BOS JRNL TITL STRUCTURE OF THE CYCLIC-AMP RESPONSIVE EXCHANGE FACTOR EPAC2 JRNL TITL 2 IN ITS AUTO-INHIBITED STATE JRNL REF NATURE V. 439 625 2006 JRNL REFN ISSN 0028-0836 JRNL PMID 16452984 JRNL DOI 10.1038/NATURE04468 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.REHMANN,B.PRAKASH,E.WOLF,A.RUEPPEL,J.DEROOIJ,J.L.BOS, REMARK 1 AUTH 2 A.WITTINGHOFER REMARK 1 TITL STRUCTURE AND REGULATION OF THE CAMP BINDING DOMAINS OF REMARK 1 TITL 2 EPAC2 REMARK 1 REF NAT.STRUCT.BIOL. V. 10 26 2002 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 12469113 REMARK 1 DOI 10.1038/NSB878 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1791 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2462 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : -1.64000 REMARK 3 B33 (A**2) : 1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.885 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.381 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.312 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.860 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7511 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10166 ; 0.950 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 917 ; 4.742 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 357 ;35.763 ;23.950 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1334 ;15.602 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;14.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1151 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5641 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3179 ; 0.173 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5136 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 201 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.110 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.218 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4751 ; 0.340 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7430 ; 0.608 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3119 ; 0.440 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2736 ; 0.750 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESDIUES 1-14, 171-178, 465-476, 614-641, 725-731, REMARK 3 992-993 ARE DISORDERED REMARK 4 REMARK 4 2BYV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1290025243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976269 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35428 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1O7F, PDB ENTRY 1BKD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BISTRISPROPANE7.5, 200 MM REMARK 280 NANO3, 12% PEG 3350, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.20300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.05050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.51900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.05050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.20300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.51900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY E -5 REMARK 465 SER E -4 REMARK 465 PRO E -3 REMARK 465 GLY E -2 REMARK 465 ILE E -1 REMARK 465 PRO E 0 REMARK 465 MET E 1 REMARK 465 VAL E 2 REMARK 465 ALA E 3 REMARK 465 ALA E 4 REMARK 465 HIS E 5 REMARK 465 ALA E 6 REMARK 465 ALA E 7 REMARK 465 HIS E 8 REMARK 465 SER E 9 REMARK 465 GLN E 10 REMARK 465 SER E 11 REMARK 465 SER E 12 REMARK 465 ALA E 13 REMARK 465 GLU E 14 REMARK 465 ASN E 171 REMARK 465 ASP E 172 REMARK 465 ARG E 173 REMARK 465 ILE E 174 REMARK 465 PRO E 175 REMARK 465 ASP E 176 REMARK 465 LYS E 177 REMARK 465 GLU E 178 REMARK 465 GLY E 465 REMARK 465 ASN E 466 REMARK 465 ARG E 467 REMARK 465 ALA E 468 REMARK 465 ALA E 469 REMARK 465 ASN E 470 REMARK 465 GLN E 471 REMARK 465 GLY E 472 REMARK 465 ASN E 473 REMARK 465 SER E 474 REMARK 465 GLN E 475 REMARK 465 PRO E 476 REMARK 465 GLN E 614 REMARK 465 ILE E 615 REMARK 465 SER E 616 REMARK 465 GLU E 617 REMARK 465 ASP E 618 REMARK 465 ALA E 619 REMARK 465 LYS E 620 REMARK 465 ALA E 621 REMARK 465 PRO E 622 REMARK 465 GLN E 623 REMARK 465 LYS E 624 REMARK 465 LYS E 625 REMARK 465 HIS E 626 REMARK 465 LYS E 627 REMARK 465 VAL E 628 REMARK 465 LEU E 629 REMARK 465 LEU E 630 REMARK 465 GLN E 631 REMARK 465 GLN E 632 REMARK 465 PHE E 633 REMARK 465 ASN E 634 REMARK 465 THR E 635 REMARK 465 GLY E 636 REMARK 465 ASP E 637 REMARK 465 GLU E 638 REMARK 465 ARG E 639 REMARK 465 ALA E 640 REMARK 465 GLN E 641 REMARK 465 CYS E 725 REMARK 465 PRO E 726 REMARK 465 ARG E 727 REMARK 465 GLU E 728 REMARK 465 GLN E 729 REMARK 465 PHE E 730 REMARK 465 ASP E 731 REMARK 465 ARG E 992 REMARK 465 PRO E 993 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG E 276 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 391 CG CD CE NZ REMARK 470 LYS E 556 CG CD CE NZ REMARK 470 SER E 592 OG REMARK 470 MET E 597 CG SD CE REMARK 470 GLU E 603 CG CD OE1 OE2 REMARK 470 LYS E 613 CG CD CE NZ REMARK 470 LYS E 642 CG CD CE NZ REMARK 470 GLU E 689 CG CD OE1 OE2 REMARK 470 VAL E 694 CG1 CG2 REMARK 470 GLN E 818 CG CD OE1 NE2 REMARK 470 LYS E 821 CG CD CE NZ REMARK 470 LYS E 866 CG CD CE NZ REMARK 470 LYS E 960 CG CD CE NZ REMARK 470 ARG E 979 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO E 900 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR E 78 -35.49 -130.85 REMARK 500 LEU E 211 -4.58 63.18 REMARK 500 ARG E 215 -154.33 -71.59 REMARK 500 GLN E 216 83.35 -58.60 REMARK 500 ASP E 257 -146.44 -100.70 REMARK 500 ASP E 273 22.11 -75.14 REMARK 500 VAL E 409 -46.59 -134.94 REMARK 500 PRO E 463 -74.96 -68.16 REMARK 500 LEU E 504 54.62 -91.72 REMARK 500 GLU E 576 47.86 -66.79 REMARK 500 MET E 597 -85.14 -109.90 REMARK 500 ILE E 611 30.48 -93.21 REMARK 500 VAL E 612 -51.36 -138.75 REMARK 500 HIS E 661 80.60 55.43 REMARK 500 LEU E 685 118.43 69.49 REMARK 500 ILE E 693 102.87 60.09 REMARK 500 GLU E 701 98.10 -62.74 REMARK 500 VAL E 747 87.65 59.04 REMARK 500 THR E 749 -120.81 45.28 REMARK 500 PRO E 900 -53.78 -23.31 REMARK 500 PRO E 901 96.28 -62.05 REMARK 500 ASP E 925 70.01 50.34 REMARK 500 ALA E 955 -158.54 54.18 REMARK 500 ALA E 956 70.17 15.84 REMARK 500 GLN E 957 -93.52 -159.26 REMARK 500 ASN E 959 49.73 -108.43 REMARK 500 ASN E 961 -21.36 -150.17 REMARK 500 HIS E 962 41.79 -89.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O7F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE REGULATORY DOMAIN OF EPAC2 DBREF 2BYV E -5 0 PDB 2BYV 2BYV -5 0 DBREF 2BYV E 1 993 UNP Q9EQZ6 RPGF4_MOUSE 1 993 SEQRES 1 E 999 GLY SER PRO GLY ILE PRO MET VAL ALA ALA HIS ALA ALA SEQRES 2 E 999 HIS SER GLN SER SER ALA GLU TRP ILE ALA CYS LEU ASP SEQRES 3 E 999 LYS ARG PRO LEU GLU ARG SER SER GLU ASP VAL ASP ILE SEQRES 4 E 999 ILE PHE THR ARG LEU LYS GLY VAL LYS ALA PHE GLU LYS SEQRES 5 E 999 PHE HIS PRO ASN LEU LEU ARG GLN ILE CYS LEU CYS GLY SEQRES 6 E 999 TYR TYR GLU ASN LEU GLU LYS GLY ILE THR LEU PHE ARG SEQRES 7 E 999 GLN GLY ASP ILE GLY THR ASN TRP TYR ALA VAL LEU ALA SEQRES 8 E 999 GLY SER LEU ASP VAL LYS VAL SER GLU THR SER SER HIS SEQRES 9 E 999 GLN ASP ALA VAL THR ILE CYS THR LEU GLY ILE GLY THR SEQRES 10 E 999 ALA PHE GLY GLU SER ILE LEU ASP ASN THR PRO ARG HIS SEQRES 11 E 999 ALA THR ILE VAL THR ARG GLU SER SER GLU LEU LEU ARG SEQRES 12 E 999 ILE GLU GLN GLU ASP PHE LYS ALA LEU TRP GLU LYS TYR SEQRES 13 E 999 ARG GLN TYR MET ALA GLY LEU LEU ALA PRO PRO TYR GLY SEQRES 14 E 999 VAL MET GLU THR GLY SER ASN ASN ASP ARG ILE PRO ASP SEQRES 15 E 999 LYS GLU ASN VAL PRO SER GLU LYS ILE LEU ARG ALA GLY SEQRES 16 E 999 LYS ILE LEU ARG ILE ALA ILE LEU SER ARG ALA PRO HIS SEQRES 17 E 999 MET ILE ARG ASP ARG LYS TYR HIS LEU LYS THR TYR ARG SEQRES 18 E 999 GLN CYS CYS VAL GLY THR GLU LEU VAL ASP TRP MET ILE SEQRES 19 E 999 GLN GLN THR SER CYS VAL HIS SER ARG THR GLN ALA VAL SEQRES 20 E 999 GLY MET TRP GLN VAL LEU LEU GLU ASP GLY VAL LEU ASN SEQRES 21 E 999 HIS VAL ASP GLN GLU ARG HIS PHE GLN ASP LYS TYR LEU SEQRES 22 E 999 PHE TYR ARG PHE LEU ASP ASP GLU ARG GLU ASP ALA PRO SEQRES 23 E 999 LEU PRO THR GLU GLU GLU LYS LYS GLU CYS ASP GLU GLU SEQRES 24 E 999 LEU GLN ASP THR MET LEU LEU LEU SER GLN MET GLY PRO SEQRES 25 E 999 ASP ALA HIS MET ARG MET ILE LEU ARG LYS PRO PRO GLY SEQRES 26 E 999 GLN ARG THR VAL ASP ASP LEU GLU ILE ILE TYR ASP GLU SEQRES 27 E 999 LEU LEU HIS ILE LYS ALA LEU SER HIS LEU SER THR THR SEQRES 28 E 999 VAL LYS ARG GLU LEU ALA GLY VAL LEU ILE PHE GLU SER SEQRES 29 E 999 HIS ALA LYS GLY GLY THR VAL LEU PHE ASN GLN GLY GLU SEQRES 30 E 999 GLU GLY THR SER TRP TYR ILE ILE LEU LYS GLY SER VAL SEQRES 31 E 999 ASN VAL VAL ILE TYR GLY LYS GLY VAL VAL CYS THR LEU SEQRES 32 E 999 HIS GLU GLY ASP ASP PHE GLY LYS LEU ALA LEU VAL ASN SEQRES 33 E 999 ASP ALA PRO ARG ALA ALA SER ILE VAL LEU ARG GLU ASP SEQRES 34 E 999 ASN CYS HIS PHE LEU ARG VAL ASP LYS GLU ASP PHE ASN SEQRES 35 E 999 ARG ILE LEU ARG ASP VAL GLU ALA ASN THR VAL ARG LEU SEQRES 36 E 999 LYS GLU HIS ASP GLN ASP VAL LEU VAL LEU GLU LYS VAL SEQRES 37 E 999 PRO ALA GLY ASN ARG ALA ALA ASN GLN GLY ASN SER GLN SEQRES 38 E 999 PRO GLN GLN LYS TYR THR VAL MET SER GLY THR PRO GLU SEQRES 39 E 999 LYS ILE LEU GLU HIS PHE LEU GLU THR ILE ARG LEU GLU SEQRES 40 E 999 PRO SER LEU ASN GLU ALA THR ASP SER VAL LEU ASN ASP SEQRES 41 E 999 PHE VAL MET MET HIS CYS VAL PHE MET PRO ASN THR GLN SEQRES 42 E 999 LEU CYS PRO ALA LEU VAL ALA HIS TYR HIS ALA GLN PRO SEQRES 43 E 999 SER GLN GLY THR GLU GLN GLU ARG MET ASP TYR ALA LEU SEQRES 44 E 999 ASN ASN LYS ARG ARG VAL ILE ARG LEU VAL LEU GLN TRP SEQRES 45 E 999 ALA ALA MET TYR GLY ASP LEU LEU GLN GLU ASP ASP VAL SEQRES 46 E 999 ALA MET ALA PHE LEU GLU GLU PHE TYR VAL SER VAL SER SEQRES 47 E 999 ASP ASP ALA ARG MET MET ALA ALA PHE LYS GLU GLN LEU SEQRES 48 E 999 PRO GLU LEU GLU LYS ILE VAL LYS GLN ILE SER GLU ASP SEQRES 49 E 999 ALA LYS ALA PRO GLN LYS LYS HIS LYS VAL LEU LEU GLN SEQRES 50 E 999 GLN PHE ASN THR GLY ASP GLU ARG ALA GLN LYS ARG GLN SEQRES 51 E 999 PRO ILE ARG GLY SER ASP GLU VAL LEU PHE LYS VAL TYR SEQRES 52 E 999 CYS ILE ASP HIS THR TYR THR THR ILE ARG VAL PRO VAL SEQRES 53 E 999 ALA ALA SER VAL LYS GLU VAL ILE SER ALA VAL ALA ASP SEQRES 54 E 999 LYS LEU GLY SER GLY GLU GLY LEU ILE ILE VAL LYS MET SEQRES 55 E 999 ASN SER GLY GLY GLU LYS VAL VAL LEU LYS SER ASN ASP SEQRES 56 E 999 VAL SER VAL PHE THR THR LEU THR ILE ASN GLY ARG LEU SEQRES 57 E 999 PHE ALA CYS PRO ARG GLU GLN PHE ASP SER LEU THR PRO SEQRES 58 E 999 LEU PRO GLU GLN GLU GLY PRO THR THR GLY THR VAL GLY SEQRES 59 E 999 THR PHE GLU LEU MET SER SER LYS ASP LEU ALA TYR GLN SEQRES 60 E 999 MET THR THR TYR ASP TRP GLU LEU PHE ASN CYS VAL HIS SEQRES 61 E 999 GLU LEU GLU LEU ILE TYR HIS THR PHE GLY ARG HIS ASN SEQRES 62 E 999 PHE LYS LYS THR THR ALA ASN LEU ASP LEU PHE LEU ARG SEQRES 63 E 999 ARG PHE ASN GLU ILE GLN PHE TRP VAL VAL THR GLU VAL SEQRES 64 E 999 CYS LEU CYS SER GLN LEU SER LYS ARG VAL GLN LEU LEU SEQRES 65 E 999 LYS LYS PHE ILE LYS ILE ALA ALA HIS CYS LYS GLU TYR SEQRES 66 E 999 LYS ASN LEU ASN SER PHE PHE ALA ILE VAL MET GLY LEU SEQRES 67 E 999 SER ASN VAL ALA VAL SER ARG LEU ALA LEU THR TRP GLU SEQRES 68 E 999 LYS LEU PRO SER LYS PHE LYS LYS PHE TYR ALA GLU PHE SEQRES 69 E 999 GLU SER LEU MET ASP PRO SER ARG ASN HIS ARG ALA TYR SEQRES 70 E 999 ARG LEU THR ALA ALA LYS LEU GLU PRO PRO LEU ILE PRO SEQRES 71 E 999 PHE MET PRO LEU LEU ILE LYS ASP MET THR PHE THR HIS SEQRES 72 E 999 GLU GLY ASN LYS THR PHE ILE ASP ASN LEU VAL ASN PHE SEQRES 73 E 999 GLU LYS MET ARG MET ILE ALA ASN THR ALA ARG THR VAL SEQRES 74 E 999 ARG TYR TYR ARG SER GLN PRO PHE ASN PRO ASP ALA ALA SEQRES 75 E 999 GLN ALA ASN LYS ASN HIS GLN ASP VAL ARG SER TYR VAL SEQRES 76 E 999 ARG GLN LEU ASN VAL ILE ASP ASN GLN ARG THR LEU SER SEQRES 77 E 999 GLN MET SER HIS ARG LEU GLU PRO ARG ARG PRO FORMUL 2 HOH *66(H2 O) HELIX 1 1 TRP E 15 LYS E 21 1 7 HELIX 2 2 SER E 27 VAL E 41 1 15 HELIX 3 3 LYS E 42 GLU E 45 5 4 HELIX 4 4 HIS E 48 GLY E 59 1 12 HELIX 5 5 SER E 97 ALA E 101 5 5 HELIX 6 6 GLY E 114 ASN E 120 5 7 HELIX 7 7 GLN E 140 ALA E 155 1 16 HELIX 8 8 SER E 182 ALA E 200 1 19 HELIX 9 9 PRO E 201 ILE E 204 5 4 HELIX 10 10 GLY E 220 GLN E 230 1 11 HELIX 11 11 SER E 236 ASP E 250 1 15 HELIX 12 12 ASP E 273 GLU E 275 5 3 HELIX 13 13 THR E 283 ARG E 315 1 33 HELIX 14 14 PRO E 317 ARG E 321 5 5 HELIX 15 15 THR E 322 LEU E 334 1 13 HELIX 16 16 HIS E 335 SER E 340 5 6 HELIX 17 17 SER E 343 ALA E 351 1 9 HELIX 18 18 LYS E 405 VAL E 409 5 5 HELIX 19 19 LYS E 432 ALA E 444 1 13 HELIX 20 20 THR E 486 ILE E 498 1 13 HELIX 21 21 GLU E 501 SER E 503 5 3 HELIX 22 22 LEU E 504 MET E 523 1 20 HELIX 23 23 PRO E 524 HIS E 537 1 14 HELIX 24 24 THR E 544 GLY E 571 1 28 HELIX 25 25 ASP E 577 ASP E 594 1 18 HELIX 26 26 PRO E 606 ILE E 611 1 6 HELIX 27 27 SER E 673 ALA E 682 1 10 HELIX 28 28 ASP E 683 LEU E 685 5 3 HELIX 29 29 LEU E 736 GLY E 741 5 6 HELIX 30 30 GLY E 748 MET E 753 5 6 HELIX 31 31 SER E 754 ASN E 771 1 18 HELIX 32 32 HIS E 774 GLY E 784 1 11 HELIX 33 33 ARG E 785 PHE E 788 5 4 HELIX 34 34 THR E 792 CYS E 816 1 25 HELIX 35 35 GLN E 818 TYR E 839 1 22 HELIX 36 36 ASN E 841 ASN E 854 1 14 HELIX 37 37 ASN E 854 ARG E 859 1 6 HELIX 38 38 LEU E 860 LEU E 867 1 8 HELIX 39 39 PRO E 868 MET E 882 1 15 HELIX 40 40 PRO E 884 LYS E 897 1 14 HELIX 41 41 PHE E 905 GLY E 919 1 15 HELIX 42 42 PHE E 930 ARG E 947 1 18 HELIX 43 43 HIS E 962 GLN E 971 1 10 HELIX 44 44 ASN E 977 GLU E 989 1 13 SHEET 1 EA 4 TYR E 60 LEU E 64 0 SHEET 2 EA 4 SER E 133 GLU E 139 -1 O SER E 133 N LEU E 64 SHEET 3 EA 4 ASN E 79 ALA E 85 -1 O TRP E 80 N ILE E 138 SHEET 4 EA 4 ALA E 112 PHE E 113 -1 O PHE E 113 N TYR E 81 SHEET 1 EB 8 THR E 69 PHE E 71 0 SHEET 2 EB 8 THR E 126 THR E 129 -1 O ILE E 127 N LEU E 70 SHEET 3 EB 8 LEU E 88 VAL E 92 -1 O ASP E 89 N VAL E 128 SHEET 4 EB 8 VAL E 102 LEU E 107 -1 O VAL E 102 N VAL E 92 SHEET 5 EB 8 ASP E 402 PHE E 403 -1 O ASP E 402 N THR E 106 SHEET 6 EB 8 SER E 375 LYS E 381 -1 O TYR E 377 N PHE E 403 SHEET 7 EB 8 CYS E 425 ASP E 431 -1 O HIS E 426 N LYS E 381 SHEET 8 EB 8 ILE E 355 HIS E 359 -1 O ILE E 355 N ARG E 429 SHEET 1 EC 4 ARG E 205 TYR E 209 0 SHEET 2 EC 4 LYS E 212 VAL E 219 -1 O LYS E 212 N TYR E 209 SHEET 3 EC 4 PHE E 268 PHE E 271 -1 O TYR E 269 N CYS E 218 SHEET 4 EC 4 LEU E 253 HIS E 255 -1 O ASN E 254 N ARG E 270 SHEET 1 ED 4 VAL E 365 PHE E 367 0 SHEET 2 ED 4 SER E 417 LEU E 420 -1 O ILE E 418 N LEU E 366 SHEET 3 ED 4 VAL E 384 ILE E 388 -1 O ASN E 385 N VAL E 419 SHEET 4 ED 4 GLY E 392 LEU E 397 -1 O GLY E 392 N ILE E 388 SHEET 1 EE 4 THR E 446 LYS E 450 0 SHEET 2 EE 4 ASP E 455 LYS E 461 -1 N VAL E 456 O LEU E 449 SHEET 3 EE 4 TYR E 480 GLY E 485 -1 O THR E 481 N GLU E 460 SHEET 4 EE 4 VAL E 928 ASN E 929 -1 N VAL E 928 O GLY E 485 SHEET 1 EF 2 GLU E 651 LYS E 655 0 SHEET 2 EF 2 THR E 665 PRO E 669 -1 O ILE E 666 N PHE E 654 SHEET 1 EG 3 LYS E 702 VAL E 704 0 SHEET 2 EG 3 VAL E 694 MET E 696 -1 O LYS E 695 N VAL E 703 SHEET 3 EG 3 ARG E 721 PHE E 723 -1 O ARG E 721 N MET E 696 CISPEP 1 PRO E 160 PRO E 161 0 6.29 CRYST1 76.406 97.038 172.101 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013088 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005811 0.00000