HEADER HYDROLASE 14-SEP-05 2C1G TITLE STRUCTURE OF STREPTOCOCCUS PNEUMONIAE PEPTIDOGLYCAN DEACETYLASE TITLE 2 (SPPGDA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN GLCNAC DEACETYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 38-463; COMPND 5 SYNONYM: SPPGDA-WT; COMPND 6 EC: 3.5.1.33; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 171101; SOURCE 4 STRAIN: R6; SOURCE 5 ATCC: BAA-255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS CE-4, CARBOHYDRATE ESTERASE, PEPTIDOGLYCAN DEACETYLASE, KEYWDS 2 METALLOENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.E.BLAIR,A.W.SCHUTTELKOPF,J.I.MACRAE,D.M.F.VAN AALTEN REVDAT 3 28-FEB-18 2C1G 1 SOURCE AUTHOR JRNL REMARK REVDAT 2 24-FEB-09 2C1G 1 VERSN REVDAT 1 15-SEP-05 2C1G 0 JRNL AUTH D.E.BLAIR,A.W.SCHUTTELKOPF,J.I.MACRAE,D.M.VAN AALTEN JRNL TITL STRUCTURE AND METAL-DEPENDENT MECHANISM OF PEPTIDOGLYCAN JRNL TITL 2 DEACETYLASE, A STREPTOCOCCAL VIRULENCE FACTOR. JRNL REF PROC. NATL. ACAD. SCI. V. 102 15429 2005 JRNL REF 2 U.S.A. JRNL REFN ISSN 0027-8424 JRNL PMID 16221761 JRNL DOI 10.1073/PNAS.0504339102 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1753933.750 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 44041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 906 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7045 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 151 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3098 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.810 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.680 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.770 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.080 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 54.98 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PEG.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : ACE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : PEG.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : ACE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2C1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1290025636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44323 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 35% PEG REMARK 280 200, 5% PEG 3000, 100 MM MES, PH 6; THEN SOAKED IN 10 MM ZNCL2. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.76450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.75750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.21950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.75750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.76450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.21950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 33 REMARK 465 PRO A 34 REMARK 465 LEU A 35 REMARK 465 GLY A 36 REMARK 465 SER A 37 REMARK 465 PHE A 38 REMARK 465 LYS A 39 REMARK 465 ILE A 40 REMARK 465 TYR A 41 REMARK 465 GLN A 42 REMARK 465 GLN A 43 REMARK 465 LYS A 44 REMARK 465 SER A 45 REMARK 465 ILE A 186 REMARK 465 GLU A 187 REMARK 465 ASP A 188 REMARK 465 LYS A 189 REMARK 465 LYS A 190 REMARK 465 ILE A 191 REMARK 465 GLU A 192 REMARK 465 GLN A 193 REMARK 465 ASP A 194 REMARK 465 GLN A 195 REMARK 465 SER A 196 REMARK 465 GLU A 197 REMARK 465 GLN A 198 REMARK 465 ILE A 199 REMARK 465 VAL A 200 REMARK 465 LYS A 201 REMARK 465 ASN A 202 REMARK 465 PHE A 203 REMARK 465 SER A 204 REMARK 465 ASP A 205 REMARK 465 GLN A 206 REMARK 465 ASP A 207 REMARK 465 LEU A 208 REMARK 465 SER A 209 REMARK 465 ALA A 210 REMARK 465 PRO A 224 REMARK 465 SER A 225 REMARK 465 PRO A 226 REMARK 465 VAL A 227 REMARK 465 VAL A 228 REMARK 465 GLU A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 GLU A 232 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 49 CG CD CE NZ REMARK 480 GLN A 74 CG CD OE1 NE2 REMARK 480 GLU A 86 CD OE1 OE2 REMARK 480 LYS A 107 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 276 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 103 -83.05 -82.57 REMARK 500 LEU A 104 -88.62 28.08 REMARK 500 GLU A 105 -50.07 74.37 REMARK 500 SER A 106 121.85 0.61 REMARK 500 LYS A 107 -126.08 -87.80 REMARK 500 LYS A 180 -81.77 -60.36 REMARK 500 GLU A 181 -19.99 -41.58 REMARK 500 THR A 282 -35.07 -135.77 REMARK 500 SER A 327 174.69 85.56 REMARK 500 TYR A 367 9.62 59.92 REMARK 500 MET A 384 -134.28 -94.80 REMARK 500 ASN A 449 -102.73 19.38 REMARK 500 HIS A 455 -21.11 78.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1465 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 326 NE2 REMARK 620 2 HIS A 330 NE2 97.6 REMARK 620 3 ACT A1464 O 92.2 90.1 REMARK 620 4 ASP A 276 OD1 88.1 100.8 169.0 REMARK 620 5 ACT A1464 OXT 89.6 144.1 54.4 114.6 REMARK 620 6 HOH A2176 O 169.8 92.4 90.1 87.7 83.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1466 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 144 OE1 REMARK 620 2 GLU A 144 OE2 56.4 REMARK 620 3 GLU A 146 OE2 95.9 144.6 REMARK 620 4 HOH A2177 O 121.4 75.9 107.5 REMARK 620 5 GLU A 340 OE2 134.8 112.1 103.0 91.4 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1464 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1465 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1466 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1467 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A1468 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 33-37 ARE FROM THE EXPRESSION SYSTEM PLASMID. DBREF 2C1G A 33 37 PDB 2C1G 2C1G 33 37 DBREF 2C1G A 38 463 UNP Q8DP63 Q8DP63_STRR6 38 463 SEQRES 1 A 431 GLY PRO LEU GLY SER PHE LYS ILE TYR GLN GLN LYS SER SEQRES 2 A 431 PHE GLU GLN LYS ILE GLU SER LEU LYS LYS GLU LYS ASP SEQRES 3 A 431 ASP GLN LEU SER GLU GLY ASN GLN LYS GLU HIS PHE ARG SEQRES 4 A 431 GLN GLY GLN ALA GLU VAL ILE ALA TYR TYR PRO LEU GLN SEQRES 5 A 431 GLY GLU LYS VAL ILE SER SER VAL ARG GLU LEU ILE ASN SEQRES 6 A 431 GLN ASP VAL LYS ASP LYS LEU GLU SER LYS ASP ASN LEU SEQRES 7 A 431 VAL PHE TYR TYR THR GLU GLN GLU GLU SER GLY LEU LYS SEQRES 8 A 431 GLY VAL VAL ASN ARG ASN VAL THR LYS GLN ILE TYR ASP SEQRES 9 A 431 LEU VAL ALA PHE LYS ILE GLU GLU THR GLU LYS THR SER SEQRES 10 A 431 LEU GLY LYS VAL HIS LEU THR GLU ASP GLY GLN PRO PHE SEQRES 11 A 431 THR LEU ASP GLN LEU PHE SER ASP ALA SER LYS ALA LYS SEQRES 12 A 431 GLU GLN LEU ILE LYS GLU LEU THR SER PHE ILE GLU ASP SEQRES 13 A 431 LYS LYS ILE GLU GLN ASP GLN SER GLU GLN ILE VAL LYS SEQRES 14 A 431 ASN PHE SER ASP GLN ASP LEU SER ALA TRP ASN PHE ASP SEQRES 15 A 431 TYR LYS ASP SER GLN ILE ILE LEU TYR PRO SER PRO VAL SEQRES 16 A 431 VAL GLU ASN LEU GLU GLU ILE ALA LEU PRO VAL SER ALA SEQRES 17 A 431 PHE PHE ASP VAL ILE GLN SER SER TYR LEU LEU GLU LYS SEQRES 18 A 431 ASP ALA ALA LEU TYR GLN SER TYR PHE ASP LYS LYS HIS SEQRES 19 A 431 GLN LYS VAL VAL ALA LEU THR PHE ASP ASP GLY PRO ASN SEQRES 20 A 431 PRO ALA THR THR PRO GLN VAL LEU GLU THR LEU ALA LYS SEQRES 21 A 431 TYR ASP ILE LYS ALA THR PHE PHE VAL LEU GLY LYS ASN SEQRES 22 A 431 VAL SER GLY ASN GLU ASP LEU VAL LYS ARG ILE LYS SER SEQRES 23 A 431 GLU GLY HIS VAL VAL GLY ASN HIS SER TRP SER HIS PRO SEQRES 24 A 431 ILE LEU SER GLN LEU SER LEU ASP GLU ALA LYS LYS GLN SEQRES 25 A 431 ILE THR ASP THR GLU ASP VAL LEU THR LYS VAL LEU GLY SEQRES 26 A 431 SER SER SER LYS LEU MET ARG PRO PRO TYR GLY ALA ILE SEQRES 27 A 431 THR ASP ASP ILE ARG ASN SER LEU ASP LEU SER PHE ILE SEQRES 28 A 431 MET TRP ASP VAL ASP SER LEU ASP TRP LYS SER LYS ASN SEQRES 29 A 431 GLU ALA SER ILE LEU THR GLU ILE GLN HIS GLN VAL ALA SEQRES 30 A 431 ASN GLY SER ILE VAL LEU MET HIS ASP ILE HIS SER PRO SEQRES 31 A 431 THR VAL ASN ALA LEU PRO ARG VAL ILE GLU TYR LEU LYS SEQRES 32 A 431 ASN GLN GLY TYR THR PHE VAL THR ILE PRO GLU MET LEU SEQRES 33 A 431 ASN THR ARG LEU LYS ALA HIS GLU LEU TYR TYR SER ARG SEQRES 34 A 431 ASP GLU HET ACT A1464 4 HET ZN A1465 1 HET ZN A1466 1 HET ZN A1467 1 HET PEG A1468 7 HETNAM ACT ACETATE ION HETNAM ZN ZINC ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 ZN 3(ZN 2+) FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *177(H2 O) HELIX 1 1 PHE A 46 SER A 62 1 17 HELIX 2 2 ILE A 89 LYS A 103 1 15 HELIX 3 3 THR A 163 LEU A 167 5 5 HELIX 4 4 ASP A 170 PHE A 185 1 16 HELIX 5 5 SER A 239 PHE A 242 5 4 HELIX 6 6 GLN A 246 TYR A 249 5 4 HELIX 7 7 LEU A 251 HIS A 266 1 16 HELIX 8 8 THR A 282 TYR A 293 1 12 HELIX 9 9 LEU A 302 VAL A 306 5 5 HELIX 10 10 ASN A 309 GLU A 319 1 11 HELIX 11 11 ILE A 332 LEU A 336 5 5 HELIX 12 12 SER A 337 GLY A 357 1 21 HELIX 13 13 PRO A 365 ALA A 369 5 5 HELIX 14 14 THR A 371 LEU A 378 1 8 HELIX 15 15 LEU A 390 LYS A 395 1 6 HELIX 16 16 ASN A 396 VAL A 408 1 13 HELIX 17 17 HIS A 420 GLN A 437 1 18 HELIX 18 18 THR A 443 ASN A 449 1 7 HELIX 19 19 THR A 450 LEU A 452 5 3 SHEET 1 AA 5 ASN A 65 GLN A 72 0 SHEET 2 AA 5 ALA A 75 GLN A 84 -1 O ALA A 75 N GLN A 72 SHEET 3 AA 5 ASN A 109 GLU A 119 1 O ASN A 109 N GLU A 76 SHEET 4 AA 5 VAL A 125 ASP A 136 -1 O ASN A 127 N GLU A 118 SHEET 5 AA 5 GLU A 143 THR A 156 -1 O GLU A 143 N ASP A 136 SHEET 1 AB 3 ASN A 65 GLN A 72 0 SHEET 2 AB 3 ALA A 75 GLN A 84 -1 O ALA A 75 N GLN A 72 SHEET 3 AB 3 LYS A 87 VAL A 88 -1 O LYS A 87 N GLN A 84 SHEET 1 AC 3 PHE A 213 LYS A 216 0 SHEET 2 AC 3 GLN A 219 LEU A 222 -1 O GLN A 219 N LYS A 216 SHEET 3 AC 3 ILE A 234 PRO A 237 -1 O ILE A 234 N LEU A 222 SHEET 1 AD 4 VAL A 322 ASN A 325 0 SHEET 2 AD 4 THR A 298 VAL A 301 1 O PHE A 299 N GLY A 324 SHEET 3 AD 4 VAL A 269 ASP A 275 1 O LEU A 272 N THR A 298 SHEET 4 AD 4 THR A 440 PHE A 441 1 O THR A 440 N VAL A 270 SHEET 1 AE 5 VAL A 322 ASN A 325 0 SHEET 2 AE 5 THR A 298 VAL A 301 1 O PHE A 299 N GLY A 324 SHEET 3 AE 5 VAL A 269 ASP A 275 1 O LEU A 272 N THR A 298 SHEET 4 AE 5 SER A 412 HIS A 417 1 O SER A 412 N ALA A 271 SHEET 5 AE 5 VAL A 387 ASP A 388 1 O VAL A 387 N LEU A 415 SHEET 1 AF 3 LEU A 362 MET A 363 0 SHEET 2 AF 3 SER A 381 ILE A 383 1 O SER A 381 N MET A 363 SHEET 3 AF 3 LEU A 457 TYR A 458 1 N TYR A 458 O PHE A 382 LINK ZN ZN A1465 NE2 HIS A 326 1555 1555 2.15 LINK ZN ZN A1465 NE2 HIS A 330 1555 1555 2.05 LINK ZN ZN A1465 O ACT A1464 1555 1555 2.38 LINK ZN ZN A1465 OD1 ASP A 276 1555 1555 2.02 LINK ZN ZN A1465 OXT ACT A1464 1555 1555 2.27 LINK ZN ZN A1465 O HOH A2176 1555 1555 2.10 LINK ZN ZN A1466 OE1 GLU A 144 1555 1555 2.24 LINK ZN ZN A1466 OE2 GLU A 144 1555 1555 2.39 LINK ZN ZN A1466 OE2 GLU A 146 1555 1555 1.66 LINK ZN ZN A1466 O HOH A2177 1555 1555 2.06 LINK ZN ZN A1466 OE2 GLU A 340 1555 4555 1.96 LINK ZN ZN A1467 NE2 HIS A 455 1555 1555 2.22 CISPEP 1 GLY A 277 PRO A 278 0 -0.41 SITE 1 AC1 11 ASP A 275 ASP A 276 HIS A 326 HIS A 330 SITE 2 AC1 11 PRO A 366 TYR A 367 TRP A 385 HIS A 417 SITE 3 AC1 11 ZN A1465 PEG A1468 HOH A2176 SITE 1 AC2 5 ASP A 276 HIS A 326 HIS A 330 ACT A1464 SITE 2 AC2 5 HOH A2176 SITE 1 AC3 4 GLU A 144 GLU A 146 GLU A 340 HOH A2177 SITE 1 AC4 2 ASP A 379 HIS A 455 SITE 1 AC5 3 TYR A 367 TRP A 392 ACT A1464 CRYST1 55.529 78.439 99.515 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018009 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010049 0.00000