HEADER TRANSFERASE 12-OCT-05 2C3T TITLE HUMAN GLUTATHIONE-S-TRANSFERASE T1-1, W234R MUTANT, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE THETA 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HUMAN GLUTATHIONE TRANSFERASE T1-1, GST CLASS-THETA 1; COMPND 5 EC: 2.5.1.18; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE KEYWDS TRANSFERASE, GLUTATHIONE, GLUTATHIONE TRANSFERASE, T1-1, POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR K.TARS,A.-K.LARSSON,A.SHOKEER,B.OLIN,B.MANNERVIK,G.J.KLEYWEGT REVDAT 5 13-DEC-23 2C3T 1 REMARK REVDAT 4 15-MAY-19 2C3T 1 REMARK REVDAT 3 24-FEB-09 2C3T 1 VERSN REVDAT 2 14-DEC-05 2C3T 1 JRNL REVDAT 1 30-NOV-05 2C3T 0 JRNL AUTH K.TARS,A.-K.LARSSON,A.SHOKEER,B.OLIN,B.MANNERVIK, JRNL AUTH 2 G.J.KLEYWEGT JRNL TITL STRUCTURAL BASIS OF THE SUPPRESSED CATALYTIC ACTIVITY OF JRNL TITL 2 WILD-TYPE HUMAN GLUTATHIONE TRANSFERASE T1-1 COMPARED TO ITS JRNL TITL 3 W234R MUTANT. JRNL REF J.MOL.BIOL. V. 355 96 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16298388 JRNL DOI 10.1016/J.JMB.2005.10.049 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 33761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1805 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7676 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.332 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.230 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.042 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7864 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10696 ; 1.233 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 952 ; 1.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 340 ;19.612 ;23.647 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1376 ; 6.831 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ; 5.676 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1224 ; 0.004 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5880 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3938 ; 0.203 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5379 ; 0.311 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 538 ; 0.187 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.196 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.305 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5028 ; 0.811 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7792 ; 1.370 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3322 ; 1.993 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2904 ; 3.098 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2C3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1290025964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 200 DATA REDUNDANCY : 1.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2C3Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING-DROP VAPOR-DIFFUSION REMARK 280 TECHNIQUE. 5 MICROLITRES OF RESERVOIR SOLUTION [35% (V/V) PEG REMARK 280 3350, 200 MM MG(NO3)2, AND 2 MM DITHIOTHREITOL] WERE MIXED WITH REMARK 280 5 MICROLITRES OF PROTEIN SOLUTION (10 MG/ML IN 10 MM TRIS-HCL PH REMARK 280 7.8, 15 % GLYCEROL) AND 1 MICROLITRE OF 100 MM CACL2, PH 8.00, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 82.26200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.91100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 82.26200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.91100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TRP 233 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN B, TRP 233 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN C, TRP 233 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN D, TRP 233 TO ARG REMARK 400 REMARK 400 THE ENGINEERED RESIDUE IS NUMBERED 234 IN THE COORDINATE REMARK 400 RECORDS BELOW. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 MET C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 MET D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2036 O HOH C 2065 4457 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 41 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 50 -6.80 -57.77 REMARK 500 GLU A 66 104.60 69.24 REMARK 500 LYS A 79 101.10 43.73 REMARK 500 THR A 105 -88.73 -128.27 REMARK 500 VAL A 118 -63.00 -131.33 REMARK 500 VAL A 122 -81.00 -75.87 REMARK 500 PHE A 151 -66.66 -108.99 REMARK 500 GLN A 153 -118.34 64.33 REMARK 500 VAL A 184 -60.36 -128.39 REMARK 500 PRO A 225 -37.37 -27.52 REMARK 500 LEU B 9 3.51 -63.39 REMARK 500 GLU B 66 110.31 66.69 REMARK 500 LYS B 79 63.46 39.27 REMARK 500 TYR B 85 82.18 -151.16 REMARK 500 PRO B 86 153.83 -49.76 REMARK 500 THR B 105 -90.79 -113.01 REMARK 500 VAL B 118 -49.51 -132.52 REMARK 500 PHE B 151 -70.26 -112.82 REMARK 500 GLN B 153 -127.05 48.90 REMARK 500 PRO B 225 -32.93 -29.62 REMARK 500 LEU C 9 4.13 -64.74 REMARK 500 ASN C 49 85.98 142.07 REMARK 500 GLU C 66 112.92 79.80 REMARK 500 LYS C 79 51.88 37.11 REMARK 500 TYR C 85 83.94 -156.71 REMARK 500 THR C 105 -87.83 -120.85 REMARK 500 VAL C 118 -47.33 -139.47 REMARK 500 PHE C 151 -70.59 -108.13 REMARK 500 GLN C 153 -128.50 54.67 REMARK 500 ALA C 217 -66.21 -21.95 REMARK 500 LYS C 218 -5.86 -55.97 REMARK 500 PRO C 225 -2.95 -47.83 REMARK 500 LEU D 9 -3.81 -59.75 REMARK 500 ASP D 34 94.37 -64.27 REMARK 500 GLU D 66 106.20 70.80 REMARK 500 LYS D 79 66.09 23.76 REMARK 500 THR D 105 -89.37 -116.05 REMARK 500 PHE D 151 -71.72 -107.50 REMARK 500 GLN D 153 -130.24 54.95 REMARK 500 PRO D 225 2.22 -51.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C3N RELATED DB: PDB REMARK 900 HUMAN GLUTATHIONE-S-TRANSFERASE T1-1, APO FORM REMARK 900 RELATED ID: 2C3Q RELATED DB: PDB REMARK 900 HUMAN GLUTATHIONE-S-TRANSFERASE T1-1 W234R MUTANT, COMPLEX WITH S- REMARK 900 HEXYLGLUTATHIONE REMARK 999 REMARK 999 SEQUENCE REMARK 999 6XHIS TAG ADDED TO THE N-TERMINUS OF PROTEIN. RESIDUE TRP REMARK 999 234 MUTATED TO ARGININE. DBREF 2C3T A -6 1 PDB 2C3T 2C3T -6 1 DBREF 2C3T A 2 240 UNP P30711 GSTT1_HUMAN 1 239 DBREF 2C3T B -6 1 PDB 2C3T 2C3T -6 1 DBREF 2C3T B 2 240 UNP P30711 GSTT1_HUMAN 1 239 DBREF 2C3T C -6 1 PDB 2C3T 2C3T -6 1 DBREF 2C3T C 2 240 UNP P30711 GSTT1_HUMAN 1 239 DBREF 2C3T D -6 1 PDB 2C3T 2C3T -6 1 DBREF 2C3T D 2 240 UNP P30711 GSTT1_HUMAN 1 239 SEQADV 2C3T ARG A 234 UNP P30711 TRP 233 ENGINEERED MUTATION SEQADV 2C3T ARG B 234 UNP P30711 TRP 233 ENGINEERED MUTATION SEQADV 2C3T ARG C 234 UNP P30711 TRP 233 ENGINEERED MUTATION SEQADV 2C3T ARG D 234 UNP P30711 TRP 233 ENGINEERED MUTATION SEQRES 1 A 247 MET HIS HIS HIS HIS HIS HIS MET GLY LEU GLU LEU TYR SEQRES 2 A 247 LEU ASP LEU LEU SER GLN PRO CYS ARG ALA VAL TYR ILE SEQRES 3 A 247 PHE ALA LYS LYS ASN ASP ILE PRO PHE GLU LEU ARG ILE SEQRES 4 A 247 VAL ASP LEU ILE LYS GLY GLN HIS LEU SER ASP ALA PHE SEQRES 5 A 247 ALA GLN VAL ASN PRO LEU LYS LYS VAL PRO ALA LEU LYS SEQRES 6 A 247 ASP GLY ASP PHE THR LEU THR GLU SER VAL ALA ILE LEU SEQRES 7 A 247 LEU TYR LEU THR ARG LYS TYR LYS VAL PRO ASP TYR TRP SEQRES 8 A 247 TYR PRO GLN ASP LEU GLN ALA ARG ALA ARG VAL ASP GLU SEQRES 9 A 247 TYR LEU ALA TRP GLN HIS THR THR LEU ARG ARG SER CYS SEQRES 10 A 247 LEU ARG ALA LEU TRP HIS LYS VAL MET PHE PRO VAL PHE SEQRES 11 A 247 LEU GLY GLU PRO VAL SER PRO GLN THR LEU ALA ALA THR SEQRES 12 A 247 LEU ALA GLU LEU ASP VAL THR LEU GLN LEU LEU GLU ASP SEQRES 13 A 247 LYS PHE LEU GLN ASN LYS ALA PHE LEU THR GLY PRO HIS SEQRES 14 A 247 ILE SER LEU ALA ASP LEU VAL ALA ILE THR GLU LEU MET SEQRES 15 A 247 HIS PRO VAL GLY ALA GLY CYS GLN VAL PHE GLU GLY ARG SEQRES 16 A 247 PRO LYS LEU ALA THR TRP ARG GLN ARG VAL GLU ALA ALA SEQRES 17 A 247 VAL GLY GLU ASP LEU PHE GLN GLU ALA HIS GLU VAL ILE SEQRES 18 A 247 LEU LYS ALA LYS ASP PHE PRO PRO ALA ASP PRO THR ILE SEQRES 19 A 247 LYS GLN LYS LEU MET PRO ARG VAL LEU ALA MET ILE ARG SEQRES 1 B 247 MET HIS HIS HIS HIS HIS HIS MET GLY LEU GLU LEU TYR SEQRES 2 B 247 LEU ASP LEU LEU SER GLN PRO CYS ARG ALA VAL TYR ILE SEQRES 3 B 247 PHE ALA LYS LYS ASN ASP ILE PRO PHE GLU LEU ARG ILE SEQRES 4 B 247 VAL ASP LEU ILE LYS GLY GLN HIS LEU SER ASP ALA PHE SEQRES 5 B 247 ALA GLN VAL ASN PRO LEU LYS LYS VAL PRO ALA LEU LYS SEQRES 6 B 247 ASP GLY ASP PHE THR LEU THR GLU SER VAL ALA ILE LEU SEQRES 7 B 247 LEU TYR LEU THR ARG LYS TYR LYS VAL PRO ASP TYR TRP SEQRES 8 B 247 TYR PRO GLN ASP LEU GLN ALA ARG ALA ARG VAL ASP GLU SEQRES 9 B 247 TYR LEU ALA TRP GLN HIS THR THR LEU ARG ARG SER CYS SEQRES 10 B 247 LEU ARG ALA LEU TRP HIS LYS VAL MET PHE PRO VAL PHE SEQRES 11 B 247 LEU GLY GLU PRO VAL SER PRO GLN THR LEU ALA ALA THR SEQRES 12 B 247 LEU ALA GLU LEU ASP VAL THR LEU GLN LEU LEU GLU ASP SEQRES 13 B 247 LYS PHE LEU GLN ASN LYS ALA PHE LEU THR GLY PRO HIS SEQRES 14 B 247 ILE SER LEU ALA ASP LEU VAL ALA ILE THR GLU LEU MET SEQRES 15 B 247 HIS PRO VAL GLY ALA GLY CYS GLN VAL PHE GLU GLY ARG SEQRES 16 B 247 PRO LYS LEU ALA THR TRP ARG GLN ARG VAL GLU ALA ALA SEQRES 17 B 247 VAL GLY GLU ASP LEU PHE GLN GLU ALA HIS GLU VAL ILE SEQRES 18 B 247 LEU LYS ALA LYS ASP PHE PRO PRO ALA ASP PRO THR ILE SEQRES 19 B 247 LYS GLN LYS LEU MET PRO ARG VAL LEU ALA MET ILE ARG SEQRES 1 C 247 MET HIS HIS HIS HIS HIS HIS MET GLY LEU GLU LEU TYR SEQRES 2 C 247 LEU ASP LEU LEU SER GLN PRO CYS ARG ALA VAL TYR ILE SEQRES 3 C 247 PHE ALA LYS LYS ASN ASP ILE PRO PHE GLU LEU ARG ILE SEQRES 4 C 247 VAL ASP LEU ILE LYS GLY GLN HIS LEU SER ASP ALA PHE SEQRES 5 C 247 ALA GLN VAL ASN PRO LEU LYS LYS VAL PRO ALA LEU LYS SEQRES 6 C 247 ASP GLY ASP PHE THR LEU THR GLU SER VAL ALA ILE LEU SEQRES 7 C 247 LEU TYR LEU THR ARG LYS TYR LYS VAL PRO ASP TYR TRP SEQRES 8 C 247 TYR PRO GLN ASP LEU GLN ALA ARG ALA ARG VAL ASP GLU SEQRES 9 C 247 TYR LEU ALA TRP GLN HIS THR THR LEU ARG ARG SER CYS SEQRES 10 C 247 LEU ARG ALA LEU TRP HIS LYS VAL MET PHE PRO VAL PHE SEQRES 11 C 247 LEU GLY GLU PRO VAL SER PRO GLN THR LEU ALA ALA THR SEQRES 12 C 247 LEU ALA GLU LEU ASP VAL THR LEU GLN LEU LEU GLU ASP SEQRES 13 C 247 LYS PHE LEU GLN ASN LYS ALA PHE LEU THR GLY PRO HIS SEQRES 14 C 247 ILE SER LEU ALA ASP LEU VAL ALA ILE THR GLU LEU MET SEQRES 15 C 247 HIS PRO VAL GLY ALA GLY CYS GLN VAL PHE GLU GLY ARG SEQRES 16 C 247 PRO LYS LEU ALA THR TRP ARG GLN ARG VAL GLU ALA ALA SEQRES 17 C 247 VAL GLY GLU ASP LEU PHE GLN GLU ALA HIS GLU VAL ILE SEQRES 18 C 247 LEU LYS ALA LYS ASP PHE PRO PRO ALA ASP PRO THR ILE SEQRES 19 C 247 LYS GLN LYS LEU MET PRO ARG VAL LEU ALA MET ILE ARG SEQRES 1 D 247 MET HIS HIS HIS HIS HIS HIS MET GLY LEU GLU LEU TYR SEQRES 2 D 247 LEU ASP LEU LEU SER GLN PRO CYS ARG ALA VAL TYR ILE SEQRES 3 D 247 PHE ALA LYS LYS ASN ASP ILE PRO PHE GLU LEU ARG ILE SEQRES 4 D 247 VAL ASP LEU ILE LYS GLY GLN HIS LEU SER ASP ALA PHE SEQRES 5 D 247 ALA GLN VAL ASN PRO LEU LYS LYS VAL PRO ALA LEU LYS SEQRES 6 D 247 ASP GLY ASP PHE THR LEU THR GLU SER VAL ALA ILE LEU SEQRES 7 D 247 LEU TYR LEU THR ARG LYS TYR LYS VAL PRO ASP TYR TRP SEQRES 8 D 247 TYR PRO GLN ASP LEU GLN ALA ARG ALA ARG VAL ASP GLU SEQRES 9 D 247 TYR LEU ALA TRP GLN HIS THR THR LEU ARG ARG SER CYS SEQRES 10 D 247 LEU ARG ALA LEU TRP HIS LYS VAL MET PHE PRO VAL PHE SEQRES 11 D 247 LEU GLY GLU PRO VAL SER PRO GLN THR LEU ALA ALA THR SEQRES 12 D 247 LEU ALA GLU LEU ASP VAL THR LEU GLN LEU LEU GLU ASP SEQRES 13 D 247 LYS PHE LEU GLN ASN LYS ALA PHE LEU THR GLY PRO HIS SEQRES 14 D 247 ILE SER LEU ALA ASP LEU VAL ALA ILE THR GLU LEU MET SEQRES 15 D 247 HIS PRO VAL GLY ALA GLY CYS GLN VAL PHE GLU GLY ARG SEQRES 16 D 247 PRO LYS LEU ALA THR TRP ARG GLN ARG VAL GLU ALA ALA SEQRES 17 D 247 VAL GLY GLU ASP LEU PHE GLN GLU ALA HIS GLU VAL ILE SEQRES 18 D 247 LEU LYS ALA LYS ASP PHE PRO PRO ALA ASP PRO THR ILE SEQRES 19 D 247 LYS GLN LYS LEU MET PRO ARG VAL LEU ALA MET ILE ARG FORMUL 5 HOH *267(H2 O) HELIX 1 1 PRO A 13 ASN A 24 1 12 HELIX 2 2 GLY A 38 LEU A 41 5 4 HELIX 3 3 SER A 42 ASN A 49 1 8 HELIX 4 4 GLU A 66 TYR A 78 1 13 HELIX 5 5 GLN A 87 THR A 104 1 18 HELIX 6 6 THR A 105 VAL A 118 1 14 HELIX 7 7 PRO A 121 LEU A 124 5 4 HELIX 8 8 SER A 129 ASP A 149 1 21 HELIX 9 9 ALA A 166 GLY A 181 1 16 HELIX 10 10 LYS A 190 ALA A 201 1 12 HELIX 11 11 GLU A 204 LEU A 215 1 12 HELIX 12 12 ASP A 224 ILE A 239 1 16 HELIX 13 13 PRO B 13 ASN B 24 1 12 HELIX 14 14 GLY B 38 LEU B 41 5 4 HELIX 15 15 SER B 42 ASN B 49 1 8 HELIX 16 16 GLU B 66 TYR B 78 1 13 HELIX 17 17 GLN B 87 THR B 104 1 18 HELIX 18 18 THR B 105 VAL B 118 1 14 HELIX 19 19 PRO B 121 LEU B 124 5 4 HELIX 20 20 SER B 129 ASP B 149 1 21 HELIX 21 21 ALA B 166 GLY B 181 1 16 HELIX 22 22 LYS B 190 ALA B 201 1 12 HELIX 23 23 GLU B 204 LEU B 215 1 12 HELIX 24 24 ASP B 224 ILE B 239 1 16 HELIX 25 25 PRO C 13 ASN C 24 1 12 HELIX 26 26 GLY C 38 LEU C 41 5 4 HELIX 27 27 SER C 42 ASN C 49 1 8 HELIX 28 28 GLU C 66 TYR C 78 1 13 HELIX 29 29 GLN C 87 THR C 104 1 18 HELIX 30 30 THR C 105 VAL C 118 1 14 HELIX 31 31 PRO C 121 LEU C 124 5 4 HELIX 32 32 SER C 129 ASP C 149 1 21 HELIX 33 33 ALA C 166 GLY C 181 1 16 HELIX 34 34 LYS C 190 ALA C 201 1 12 HELIX 35 35 GLU C 204 LEU C 215 1 12 HELIX 36 36 ASP C 224 ILE C 239 1 16 HELIX 37 37 PRO D 13 ASN D 24 1 12 HELIX 38 38 GLY D 38 LEU D 41 5 4 HELIX 39 39 SER D 42 ASN D 49 1 8 HELIX 40 40 GLU D 66 TYR D 78 1 13 HELIX 41 41 GLN D 87 THR D 104 1 18 HELIX 42 42 THR D 105 VAL D 118 1 14 HELIX 43 43 PRO D 121 LEU D 124 5 4 HELIX 44 44 SER D 129 ASP D 149 1 21 HELIX 45 45 ALA D 166 GLY D 181 1 16 HELIX 46 46 LYS D 190 ALA D 201 1 12 HELIX 47 47 GLU D 204 LEU D 215 1 12 HELIX 48 48 ASP D 224 ILE D 239 1 16 SHEET 1 AA 4 GLU A 29 ILE A 32 0 SHEET 2 AA 4 GLY A 2 LEU A 9 1 O LEU A 3 N GLU A 29 SHEET 3 AA 4 VAL A 54 ASP A 59 -1 O ALA A 56 N TYR A 6 SHEET 4 AA 4 ASP A 61 LEU A 64 -1 O PHE A 62 N ASP A 59 SHEET 1 BA 4 GLU B 29 ILE B 32 0 SHEET 2 BA 4 GLY B 2 LEU B 9 1 O LEU B 3 N GLU B 29 SHEET 3 BA 4 VAL B 54 ASP B 59 -1 O ALA B 56 N TYR B 6 SHEET 4 BA 4 ASP B 61 LEU B 64 -1 O PHE B 62 N ASP B 59 SHEET 1 CA 4 GLU C 29 ILE C 32 0 SHEET 2 CA 4 GLY C 2 LEU C 9 1 O LEU C 3 N GLU C 29 SHEET 3 CA 4 VAL C 54 ASP C 59 -1 O ALA C 56 N TYR C 6 SHEET 4 CA 4 ASP C 61 LEU C 64 -1 O PHE C 62 N ASP C 59 SHEET 1 DA 4 GLU D 29 ILE D 32 0 SHEET 2 DA 4 GLY D 2 LEU D 9 1 O LEU D 3 N GLU D 29 SHEET 3 DA 4 VAL D 54 ASP D 59 -1 O ALA D 56 N TYR D 6 SHEET 4 DA 4 ASP D 61 LEU D 64 -1 O PHE D 62 N ASP D 59 CISPEP 1 VAL A 54 PRO A 55 0 0.59 CISPEP 2 VAL B 54 PRO B 55 0 0.48 CISPEP 3 VAL C 54 PRO C 55 0 0.80 CISPEP 4 VAL D 54 PRO D 55 0 0.28 CRYST1 164.524 111.822 55.924 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006078 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017881 0.00000 MTRIX1 1 0.968587 -0.183150 -0.168211 9.99224 1 MTRIX2 1 -0.183345 -0.982942 0.014507 54.59685 1 MTRIX3 1 -0.167998 0.016790 -0.985644 57.82712 1 MTRIX1 2 -0.979651 0.132596 0.150673 159.11601 1 MTRIX2 2 0.090234 0.961524 -0.259478 7.89670 1 MTRIX3 2 -0.179281 -0.240602 -0.953923 91.50109 1 MTRIX1 3 -0.998501 0.051620 0.018206 165.27914 1 MTRIX2 3 -0.045300 -0.966004 0.254527 46.28961 1 MTRIX3 3 0.030725 0.253321 0.966894 21.41075 1