HEADER HYDROLASE 09-DEC-05 2C9A TITLE CRYSTAL STRUCTURE OF THE MAM-IG MODULE OF RECEPTOR PROTEIN TYROSINE TITLE 2 PHOSPHATASE MU CAVEAT 2C9A NAG C 2 HAS WRONG CHIRALITY AT ATOM C1 FUC C 3 HAS WRONG CAVEAT 2 2C9A CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE MU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MAM-IG MODULE RESIDUES 21-279; COMPND 5 SYNONYM: RECEPTOR PROTEIN TYROSINE PHOSPHATASE MU, R-PTP-MU; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK-293T; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PHL KEYWDS GLYCOPROTEIN, HYDROLASE, IMMUNOGLOBULIN DOMAIN, RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR A.R.ARICESCU,W.C.HON,C.SIEBOLD,W.LU,P.A.VAN DER MERWE,E.Y.JONES REVDAT 6 29-JUL-20 2C9A 1 CAVEAT COMPND REMARK HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 11-SEP-19 2C9A 1 CAVEAT COMPND REMARK HET REVDAT 5 2 1 HETNAM HETSYN FORMUL LINK REVDAT 5 3 1 SITE ATOM REVDAT 4 13-JUL-11 2C9A 1 VERSN REVDAT 3 24-FEB-09 2C9A 1 VERSN REVDAT 2 20-DEC-06 2C9A 1 JRNL REVDAT 1 19-JAN-06 2C9A 0 JRNL AUTH A.R.ARICESCU,W.C.HON,C.SIEBOLD,W.LU,P.A.VAN DER MERWE, JRNL AUTH 2 E.Y.JONES JRNL TITL MOLECULAR ANALYSIS OF RECEPTOR PROTEIN TYROSINE PHOSPHATASE JRNL TITL 2 MU-MEDIATED CELL ADHESION. JRNL REF EMBO J. V. 25 701 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16456543 JRNL DOI 10.1038/SJ.EMBOJ.7600974 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 534 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2037 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.22000 REMARK 3 B22 (A**2) : 9.21000 REMARK 3 B33 (A**2) : -4.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.675 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.347 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.260 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2204 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3011 ; 1.594 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 7.240 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;37.920 ;23.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 328 ;18.598 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.982 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1648 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 966 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1477 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 105 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.234 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.102 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1287 ; 0.504 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2087 ; 0.967 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 952 ; 1.623 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 924 ; 2.858 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9680 30.8680 11.1340 REMARK 3 T TENSOR REMARK 3 T11: -0.1066 T22: -0.1896 REMARK 3 T33: -0.1473 T12: 0.0174 REMARK 3 T13: -0.0189 T23: 0.1225 REMARK 3 L TENSOR REMARK 3 L11: 3.0046 L22: 3.8229 REMARK 3 L33: 3.2679 L12: 1.0449 REMARK 3 L13: -0.9155 L23: -1.6491 REMARK 3 S TENSOR REMARK 3 S11: -0.0821 S12: -0.0354 S13: 0.1176 REMARK 3 S21: -0.0303 S22: -0.2426 S23: -0.2276 REMARK 3 S31: -0.2912 S32: 0.2967 S33: 0.2120 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0750 32.5650 37.5710 REMARK 3 T TENSOR REMARK 3 T11: -0.0486 T22: 0.1640 REMARK 3 T33: 0.0981 T12: 0.0358 REMARK 3 T13: -0.0418 T23: 0.2414 REMARK 3 L TENSOR REMARK 3 L11: 6.3613 L22: 3.0388 REMARK 3 L33: 3.6254 L12: 0.4746 REMARK 3 L13: -0.3481 L23: 0.3612 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: -0.0855 S13: 0.0310 REMARK 3 S21: -0.1536 S22: 0.7718 S23: 0.5606 REMARK 3 S31: 0.0327 S32: -0.4718 S33: -0.4850 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2C9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1290026766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10567 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRI-SODIUM CITRATE, PH 6.2 0.1 M REMARK 280 AMMONIUM CHLORIDE 30% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.42800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.86850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.17850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.42800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.86850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.17850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.42800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.86850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.17850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.42800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.86850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.17850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 44 -154.37 -114.44 REMARK 500 PHE A 46 -157.95 -158.18 REMARK 500 ASN A 108 26.18 -72.88 REMARK 500 ARG A 138 51.16 23.88 REMARK 500 GLU A 174 139.76 -174.98 REMARK 500 ARG A 190 128.44 -36.47 REMARK 500 ASN A 193 154.67 -49.44 REMARK 500 ASN A 197 -89.10 -91.79 REMARK 500 ALA A 198 -118.98 -133.44 REMARK 500 ALA A 214 -81.69 -48.09 REMARK 500 ASP A 216 132.21 -31.24 REMARK 500 ARG A 253 30.34 -68.86 REMARK 500 GLU A 265 3.01 -56.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1289 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 28 O REMARK 620 2 SER A 67 OG 78.4 REMARK 620 3 ASP A 173 O 100.2 151.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1288 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 46 O REMARK 620 2 ASN A 47 OD1 61.8 REMARK 620 N 1 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RPM RELATED DB: PDB REMARK 900 HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE MU, DOMAIN 1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE DISCREPANCY, L68 IN ORIGINAL GENE BANK ENTRY IS REMARK 999 F68 DBREF 2C9A A 21 279 UNP P28827 PTPRM_HUMAN 21 279 SEQADV 2C9A PHE A 68 UNP P28827 LEU 68 CONFLICT SEQRES 1 A 259 GLU THR PHE SER GLY GLY CYS LEU PHE ASP GLU PRO TYR SEQRES 2 A 259 SER THR CYS GLY TYR SER GLN SER GLU GLY ASP ASP PHE SEQRES 3 A 259 ASN TRP GLU GLN VAL ASN THR LEU THR LYS PRO THR SER SEQRES 4 A 259 ASP PRO TRP MSE PRO SER GLY SER PHE MSE LEU VAL ASN SEQRES 5 A 259 ALA SER GLY ARG PRO GLU GLY GLN ARG ALA HIS LEU LEU SEQRES 6 A 259 LEU PRO GLN LEU LYS GLU ASN ASP THR HIS CYS ILE ASP SEQRES 7 A 259 PHE HIS TYR PHE VAL SER SER LYS SER ASN SER PRO PRO SEQRES 8 A 259 GLY LEU LEU ASN VAL TYR VAL LYS VAL ASN ASN GLY PRO SEQRES 9 A 259 LEU GLY ASN PRO ILE TRP ASN ILE SER GLY ASP PRO THR SEQRES 10 A 259 ARG THR TRP ASN ARG ALA GLU LEU ALA ILE SER THR PHE SEQRES 11 A 259 TRP PRO ASN PHE TYR GLN VAL ILE PHE GLU VAL ILE THR SEQRES 12 A 259 SER GLY HIS GLN GLY TYR LEU ALA ILE ASP GLU VAL LYS SEQRES 13 A 259 VAL LEU GLY HIS PRO CYS THR ARG THR PRO HIS PHE LEU SEQRES 14 A 259 ARG ILE GLN ASN VAL GLU VAL ASN ALA GLY GLN PHE ALA SEQRES 15 A 259 THR PHE GLN CYS SER ALA ILE GLY ARG THR VAL ALA GLY SEQRES 16 A 259 ASP ARG LEU TRP LEU GLN GLY ILE ASP VAL ARG ASP ALA SEQRES 17 A 259 PRO LEU LYS GLU ILE LYS VAL THR SER SER ARG ARG PHE SEQRES 18 A 259 ILE ALA SER PHE ASN VAL VAL ASN THR THR LYS ARG ASP SEQRES 19 A 259 ALA GLY LYS TYR ARG CYS MSE ILE ARG THR GLU GLY GLY SEQRES 20 A 259 VAL GLY ILE SER ASN TYR ALA GLU LEU VAL VAL LYS MODRES 2C9A ASN A 72 ASN GLYCOSYLATION SITE MODRES 2C9A ASN A 92 ASN GLYCOSYLATION SITE MODRES 2C9A ASN A 131 ASN GLYCOSYLATION SITE MODRES 2C9A MSE A 63 MET SELENOMETHIONINE MODRES 2C9A MSE A 69 MET SELENOMETHIONINE MODRES 2C9A MSE A 261 MET SELENOMETHIONINE HET MSE A 63 8 HET MSE A 69 8 HET MSE A 261 8 HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET MAN B 4 11 HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET NAG A1287 14 HET NA A1288 1 HET NA A1289 1 HETNAM MSE SELENOMETHIONINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM NA SODIUM ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 2 MAN 2(C6 H12 O6) FORMUL 3 FUC C6 H12 O5 FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *67(H2 O) HELIX 1 1 PRO A 32 GLY A 37 5 6 HELIX 2 2 THR A 251 ALA A 255 5 5 SHEET 1 AA 5 SER A 39 GLN A 40 0 SHEET 2 AA 5 ARG A 81 LEU A 85 -1 O LEU A 85 N SER A 39 SHEET 3 AA 5 TYR A 155 THR A 163 -1 O PHE A 159 N LEU A 84 SHEET 4 AA 5 GLY A 112 VAL A 120 -1 O LEU A 113 N ILE A 162 SHEET 5 AA 5 TRP A 130 ILE A 132 -1 O TRP A 130 N VAL A 116 SHEET 1 AB 7 GLU A 49 ASN A 52 0 SHEET 2 AB 7 SER A 67 ASN A 72 -1 O PHE A 68 N VAL A 51 SHEET 3 AB 7 TYR A 169 LEU A 178 -1 O LEU A 170 N VAL A 71 SHEET 4 AB 7 CYS A 96 SER A 104 -1 O CYS A 96 N LEU A 178 SHEET 5 AB 7 TRP A 140 ILE A 147 -1 O ASN A 141 N TYR A 101 SHEET 6 AB 7 GLY A 267 VAL A 278 1 O VAL A 268 N ALA A 146 SHEET 7 AB 7 VAL A 194 VAL A 196 1 O VAL A 194 N VAL A 277 SHEET 1 AC 8 GLU A 49 ASN A 52 0 SHEET 2 AC 8 SER A 67 ASN A 72 -1 O PHE A 68 N VAL A 51 SHEET 3 AC 8 TYR A 169 LEU A 178 -1 O LEU A 170 N VAL A 71 SHEET 4 AC 8 CYS A 96 SER A 104 -1 O CYS A 96 N LEU A 178 SHEET 5 AC 8 TRP A 140 ILE A 147 -1 O ASN A 141 N TYR A 101 SHEET 6 AC 8 GLY A 267 VAL A 278 1 O VAL A 268 N ALA A 146 SHEET 7 AC 8 LYS A 257 THR A 264 -1 O TYR A 258 N ALA A 274 SHEET 8 AC 8 ARG A 217 GLY A 222 -1 O ARG A 217 N ARG A 263 SHEET 1 AD 4 HIS A 187 PHE A 188 0 SHEET 2 AD 4 ALA A 202 ILE A 209 -1 O ILE A 209 N HIS A 187 SHEET 3 AD 4 ARG A 240 VAL A 247 -1 O PHE A 241 N ALA A 208 SHEET 4 AD 4 LEU A 230 SER A 237 -1 N LYS A 231 O SER A 244 SSBOND 1 CYS A 27 CYS A 36 1555 1555 2.06 SSBOND 2 CYS A 96 CYS A 182 1555 1555 2.04 SSBOND 3 CYS A 206 CYS A 260 1555 1555 2.02 LINK C TRP A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N PRO A 64 1555 1555 1.34 LINK C PHE A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N LEU A 70 1555 1555 1.32 LINK ND2 ASN A 72 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 92 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 131 C1 NAG A1287 1555 1555 1.44 LINK C CYS A 260 N MSE A 261 1555 1555 1.33 LINK C MSE A 261 N ILE A 262 1555 1555 1.33 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.45 LINK O3 MAN B 3 C1 MAN B 4 1555 1555 1.48 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.45 LINK O LEU A 28 NA NA A1289 1555 1555 2.45 LINK O PHE A 46 NA NA A1288 1555 1555 2.56 LINK OD1 ASN A 47 NA NA A1288 1555 1555 2.55 LINK OG SER A 67 NA NA A1289 1555 1555 2.34 LINK O ASP A 173 NA NA A1289 1555 1555 2.34 CISPEP 1 TRP A 151 PRO A 152 0 4.56 CRYST1 58.856 97.737 134.357 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016991 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007443 0.00000