HEADER FOUR HELIX BUNDLE 16-JAN-06 2CCF TITLE ANTIPARALLEL CONFIGURATION OF PLI E20S COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 249-281; COMPND 5 SYNONYM: AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 4932 KEYWDS FOUR HELIX BUNDLE, ANTIPARALLEL, PARALLEL, PLI, DNA-BINDING, NUCLEAR KEYWDS 2 PROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION, ACTIVATOR, AMINO- KEYWDS 3 ACID BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR M.K.YADAV,L.J.LEMAN,D.J.PRICE,C.L.BROOKS 3RD,C.D.STOUT,M.R.GHADIRI REVDAT 3 07-NOV-18 2CCF 1 COMPND SOURCE AUTHOR JRNL REVDAT 3 2 1 DBREF SEQADV REVDAT 2 24-FEB-09 2CCF 1 VERSN REVDAT 1 06-APR-06 2CCF 0 JRNL AUTH M.K.YADAV,L.J.LEMAN,D.J.PRICE,C.L.BROOKS 3RD,C.D.STOUT, JRNL AUTH 2 M.R.GHADIRI JRNL TITL COILED COILS AT THE EDGE OF CONFIGURATIONAL HETEROGENEITY. JRNL TITL 2 STRUCTURAL ANALYSES OF PARALLEL AND ANTIPARALLEL JRNL TITL 3 HOMOTETRAMERIC COILED COILS REVEAL CONFIGURATIONAL JRNL TITL 4 SENSITIVITY TO A SINGLE SOLVENT-EXPOSED AMINO ACID JRNL TITL 5 SUBSTITUTION. JRNL REF BIOCHEMISTRY V. 45 4463 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16584182 JRNL DOI 10.1021/BI060092Q REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 7379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 355 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 520 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.30000 REMARK 3 B22 (A**2) : 1.30000 REMARK 3 B33 (A**2) : -2.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.563 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 510 ; 0.068 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 676 ; 4.999 ; 2.029 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 61 ; 5.096 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 21 ;33.553 ;26.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 120 ;18.857 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;15.176 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 80 ; 0.408 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 342 ; 0.019 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 246 ; 0.243 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 349 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 47 ; 0.265 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.285 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 348 ; 3.072 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 493 ; 3.259 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 213 ; 7.642 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 183 ;10.085 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. R-FREE IS HIGHER THEN EXPECTED BUT CONSISTENT WITH REMARK 3 RELATED SEQUENCES IN SAME LATTICE. ELECTRON DENSITY MAPS ARE REMARK 3 EXCELLENT. REMARK 4 REMARK 4 2CCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1290027234. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 180.0 REMARK 200 PH : 10.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7769 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CAPS PH 10.5, 30% PEG 400, PH REMARK 280 10.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 17.69400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 17.69400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.11500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 17.69400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 17.69400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.11500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 17.69400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 17.69400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.11500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 17.69400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 17.69400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.11500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 35.38800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2001 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2022 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 268 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 268 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE A 0 REMARK 465 GLU A 32 REMARK 465 ARG A 33 REMARK 465 ACE B 0 REMARK 465 ARG B 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 1 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 1 CB CG CD NE CZ NH1 NH2 REMARK 470 MET B 2 CG SD CE REMARK 470 LYS B 3 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 22 O HOH B 2024 2.04 REMARK 500 OH TYR A 17 O HOH A 2012 2.11 REMARK 500 OE1 GLU A 6 O HOH A 2003 2.17 REMARK 500 O HOH A 2004 O HOH A 2005 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 4 CG GLN A 4 CD 0.241 REMARK 500 GLU A 6 CG GLU A 6 CD 0.195 REMARK 500 GLU A 6 CD GLU A 6 OE1 -0.084 REMARK 500 GLU A 11 CG GLU A 11 CD 0.091 REMARK 500 SER A 14 CB SER A 14 OG 0.104 REMARK 500 TYR A 17 CZ TYR A 17 OH 0.133 REMARK 500 TYR A 17 CZ TYR A 17 CE2 -0.100 REMARK 500 ASN A 21 C ASN A 21 O 0.119 REMARK 500 ALA A 24 CA ALA A 24 CB 0.181 REMARK 500 ARG A 25 CD ARG A 25 NE 0.139 REMARK 500 ARG A 25 NE ARG A 25 CZ 0.101 REMARK 500 LYS A 27 CD LYS A 27 CE 0.167 REMARK 500 GLY A 31 N GLY A 31 CA 0.108 REMARK 500 ARG B 1 N ARG B 1 CA 0.194 REMARK 500 LYS B 3 C LYS B 3 O 0.141 REMARK 500 GLN B 4 CA GLN B 4 C 0.163 REMARK 500 GLU B 6 CB GLU B 6 CG -0.115 REMARK 500 GLU B 10 CB GLU B 10 CG 0.151 REMARK 500 GLU B 10 CD GLU B 10 OE1 0.110 REMARK 500 GLU B 10 CD GLU B 10 OE2 0.099 REMARK 500 GLU B 11 CD GLU B 11 OE2 0.091 REMARK 500 SER B 14 N SER B 14 CA 0.189 REMARK 500 TYR B 17 CG TYR B 17 CD2 0.161 REMARK 500 TYR B 17 CD1 TYR B 17 CE1 0.130 REMARK 500 GLU B 22 CG GLU B 22 CD 0.106 REMARK 500 GLU B 22 CD GLU B 22 OE2 0.096 REMARK 500 ARG B 25 CZ ARG B 25 NH1 0.122 REMARK 500 ARG B 25 CZ ARG B 25 NH2 0.115 REMARK 500 LYS B 28 CB LYS B 28 CG 0.203 REMARK 500 LYS B 28 CD LYS B 28 CE 0.209 REMARK 500 GLU B 32 CG GLU B 32 CD 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 7 OD1 - CG - OD2 ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP A 7 CB - CG - OD2 ANGL. DEV. = -12.5 DEGREES REMARK 500 GLU A 10 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 SER A 14 CA - CB - OG ANGL. DEV. = -16.2 DEGREES REMARK 500 LEU A 16 CA - CB - CG ANGL. DEV. = -14.8 DEGREES REMARK 500 TYR A 17 CB - CG - CD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 TYR A 17 CD1 - CE1 - CZ ANGL. DEV. = -7.6 DEGREES REMARK 500 TYR A 17 CE1 - CZ - CE2 ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 25 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 25 NH1 - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 25 NE - CZ - NH1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ILE A 26 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 LYS A 28 CD - CE - NZ ANGL. DEV. = -24.2 DEGREES REMARK 500 GLY A 31 N - CA - C ANGL. DEV. = -30.7 DEGREES REMARK 500 TYR B 17 CG - CD2 - CE2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2001 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH B2003 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B2004 DISTANCE = 6.13 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CE9 RELATED DB: PDB REMARK 900 HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER REMARK 900 RELATED ID: 1DGC RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER COMPLEXED WITH SPECIFIC ATF/CREB SITE REMARK 900 DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1ENV RELATED DB: PDB REMARK 900 ATOMIC STRUCTURE OF THE ECTODOMAIN FROM HIV -1 GP41 REMARK 900 RELATED ID: 1FAV RELATED DB: PDB REMARK 900 THE STRUCTURE OF AN HIV-1 SPECIFIC CELL ENTRY INHIBITOR INCOMPLEX REMARK 900 WITH THE HIV-1 GP41 TRIMERIC CORE REMARK 900 RELATED ID: 1GCL RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER CORE MUTANT P-LI REMARK 900 RELATED ID: 1GCM RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER CORE MUTANT P-LI REMARK 900 RELATED ID: 1GK6 RELATED DB: PDB REMARK 900 HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER (Z2B) REMARK 900 RELATED ID: 1GZL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF REMARK 900 HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET REMARK 900 RELATED ID: 1IHQ RELATED DB: PDB REMARK 900 GLYTM1BZIP: A CHIMERIC PEPTIDE MODEL OF THE N-TERMINUS OF ARAT REMARK 900 SHORT ALPHA TROPOMYOSIN WITH THE N-TERMINUS ENCODED BYEXON 1B REMARK 900 RELATED ID: 1IJ0 RELATED DB: PDB REMARK 900 COILED COIL TRIMER GCN4-PVLS SER AT BURIED D POSITION REMARK 900 RELATED ID: 1IJ1 RELATED DB: PDB REMARK 900 GCN4-PVLT COILED-COIL TRIMER WITH THREONINE AT THE D(12)POSITION REMARK 900 RELATED ID: 1IJ2 RELATED DB: PDB REMARK 900 GCN4-PVTL COILED-COIL TRIMER WITH THREONINE AT THE A(16)POSITION REMARK 900 RELATED ID: 1IJ3 RELATED DB: PDB REMARK 900 GCN4-PVSL COILED-COIL TRIMER WITH SERINE AT THE A(16)POSITION REMARK 900 RELATED ID: 1KQL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF STRIATEDMUSCLE ALPHA- REMARK 900 TROPOMYOSIN AT 2.7 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1LD4 RELATED DB: PDB REMARK 900 PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS REMARK 900 RELATED ID: 1LLM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA REMARK 900 RELATED ID: 1NKN RELATED DB: PDB REMARK 900 VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTUREOF AN N- REMARK 900 TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD REMARK 900 RELATED ID: 1PIQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GCN4-PIQ, A TRIMERIC COILED COIL WITH BURIED REMARK 900 POLAR RESIDUES REMARK 900 RELATED ID: 1RB1 RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A TRIGONAL AUTOMATICSOLUTION REMARK 900 RELATED ID: 1RB4 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A REMARK 900 TETRAGONAL AUTOMATIC SOLUTION REMARK 900 RELATED ID: 1RB5 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A REMARK 900 TRIGONAL FORM REMARK 900 RELATED ID: 1RB6 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A REMARK 900 TETRAGONAL FORM REMARK 900 RELATED ID: 1SWI RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A COMPLEXED WITH BENZENE REMARK 900 RELATED ID: 1TMZ RELATED DB: PDB REMARK 900 TMZIP: A CHIMERIC PEPTIDE MODEL OF THE N- TERMINUS OF ALPHA REMARK 900 TROPOMYOSIN, NMR, 15 STRUCTURES REMARK 900 RELATED ID: 1UNT RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNU RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNV RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNW RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNX RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNY RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNZ RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO0 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO1 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO2 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO3 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO4 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO5 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1VZL RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE MUTANT PLI-E20C REMARK 900 RELATED ID: 1W5G RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE ( ACETIMIDE MODIFICATION). REMARK 900 RELATED ID: 1W5H RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE. REMARK 900 RELATED ID: 1W5I RELATED DB: PDB REMARK 900 ABA DOES NOT AFFECT TOPOLOGY OF PLI. REMARK 900 RELATED ID: 1W5J RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE REMARK 900 RELATED ID: 1W5K RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE REMARK 900 RELATED ID: 1W5L RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL TO PARALLEL SWITCH. REMARK 900 RELATED ID: 1YSA RELATED DB: PDB REMARK 900 GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH AP-1 REMARK 900 DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1ZII RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE DIMERIC STATE REMARK 900 RELATED ID: 1ZIJ RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE TRIMERIC STATE REMARK 900 RELATED ID: 1ZIK RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16LYS IN THE DIMERIC STATE REMARK 900 RELATED ID: 1ZIL RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE DIMERIC STATE REMARK 900 RELATED ID: 1ZIM RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE TRIMERIC STATE REMARK 900 RELATED ID: 1ZTA RELATED DB: PDB REMARK 900 LEUCINE ZIPPER MONOMER (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 2B1F RELATED DB: PDB REMARK 900 ANTIPARALLEL FOUR-STRANDED COILED COIL SPECIFIED BY A 3-3- REMARK 900 1HYDROPHOBIC HEPTAD REPEAT REMARK 900 RELATED ID: 2B22 RELATED DB: PDB REMARK 900 ANTIPARALLEL FOUR-STRANDED COILED COIL SPECIFIED BY A 3-3- REMARK 900 1HYDROPHOBIC HEPTAD REPEAT REMARK 900 RELATED ID: 2BNI RELATED DB: PDB REMARK 900 PLI MUTANT E20C L16G Y17H, ANTIPARALLEL REMARK 900 RELATED ID: 2CCE RELATED DB: PDB REMARK 900 PARALLEL CONFIGURATION OF PLI E20S REMARK 900 RELATED ID: 2CCN RELATED DB: PDB REMARK 900 PLI E20C IS ANTIPARALLEL REMARK 900 RELATED ID: 2DGC RELATED DB: PDB REMARK 900 GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE REMARK 900 DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 2ZTA RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER DBREF 2CCF A 1 33 UNP P03069 GCN4_YEAST 249 281 DBREF 2CCF B 1 33 UNP P03069 GCN4_YEAST 249 281 SEQADV 2CCF ACE A 0 UNP P03069 ACETYLATION SEQADV 2CCF ILE A 5 UNP P03069 LEU 253 ENGINEERED MUTATION SEQADV 2CCF LEU A 9 UNP P03069 VAL 257 ENGINEERED MUTATION SEQADV 2CCF ILE A 12 UNP P03069 LEU 260 ENGINEERED MUTATION SEQADV 2CCF LEU A 16 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 2CCF ILE A 19 UNP P03069 LEU 267 ENGINEERED MUTATION SEQADV 2CCF SER A 20 UNP P03069 GLU 268 ENGINEERED MUTATION SEQADV 2CCF LEU A 23 UNP P03069 VAL 271 ENGINEERED MUTATION SEQADV 2CCF ILE A 26 UNP P03069 LEU 274 ENGINEERED MUTATION SEQADV 2CCF LEU A 30 UNP P03069 VAL 278 ENGINEERED MUTATION SEQADV 2CCF ACE B 0 UNP P03069 ACETYLATION SEQADV 2CCF ILE B 5 UNP P03069 LEU 253 ENGINEERED MUTATION SEQADV 2CCF LEU B 9 UNP P03069 VAL 257 ENGINEERED MUTATION SEQADV 2CCF ILE B 12 UNP P03069 LEU 260 ENGINEERED MUTATION SEQADV 2CCF LEU B 16 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 2CCF ILE B 19 UNP P03069 LEU 267 ENGINEERED MUTATION SEQADV 2CCF SER B 20 UNP P03069 GLU 268 ENGINEERED MUTATION SEQADV 2CCF LEU B 23 UNP P03069 VAL 271 ENGINEERED MUTATION SEQADV 2CCF ILE B 26 UNP P03069 LEU 274 ENGINEERED MUTATION SEQADV 2CCF LEU B 30 UNP P03069 VAL 278 ENGINEERED MUTATION SEQRES 1 A 34 ACE ARG MET LYS GLN ILE GLU ASP LYS LEU GLU GLU ILE SEQRES 2 A 34 LEU SER LYS LEU TYR HIS ILE SER ASN GLU LEU ALA ARG SEQRES 3 A 34 ILE LYS LYS LEU LEU GLY GLU ARG SEQRES 1 B 34 ACE ARG MET LYS GLN ILE GLU ASP LYS LEU GLU GLU ILE SEQRES 2 B 34 LEU SER LYS LEU TYR HIS ILE SER ASN GLU LEU ALA ARG SEQRES 3 B 34 ILE LYS LYS LEU LEU GLY GLU ARG FORMUL 3 HOH *50(H2 O) HELIX 1 1 ARG A 1 GLY A 31 1 31 HELIX 2 2 ARG B 1 GLU B 32 1 32 CRYST1 35.388 35.388 104.230 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.028258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009594 0.00000