data_2COD # _entry.id 2COD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2COD pdb_00002cod 10.2210/pdb2cod/pdb RCSB RCSB024445 ? ? WWPDB D_1000024445 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002002027.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2COD _pdbx_database_status.recvd_initial_deposition_date 2005-05-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, H.' 1 'Tomizawa, T.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the N-terminal PH domain of ARAP2 protein from human' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, H.' 1 ? primary 'Tomizawa, T.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Centaurin-delta 1' _entity.formula_weight 12872.477 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PH domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cnt-d1, Arf-GAP, Rho-GAP, ankyrin repeat and pleckstrin homology domain-containing protein 2, PARX protein, ARAP2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFEVVTTQRTFVFR VEKEEERNDWISILLNALKSQSLTSQSQASGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFEVVTTQRTFVFR VEKEEERNDWISILLNALKSQSLTSQSQASGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002002027.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LYS n 1 9 VAL n 1 10 LYS n 1 11 SER n 1 12 GLY n 1 13 TRP n 1 14 LEU n 1 15 ASP n 1 16 LYS n 1 17 LEU n 1 18 SER n 1 19 PRO n 1 20 GLN n 1 21 GLY n 1 22 LYS n 1 23 ARG n 1 24 MET n 1 25 PHE n 1 26 GLN n 1 27 LYS n 1 28 ARG n 1 29 TRP n 1 30 VAL n 1 31 LYS n 1 32 PHE n 1 33 ASP n 1 34 GLY n 1 35 LEU n 1 36 SER n 1 37 ILE n 1 38 SER n 1 39 TYR n 1 40 TYR n 1 41 ASN n 1 42 ASN n 1 43 GLU n 1 44 LYS n 1 45 GLU n 1 46 MET n 1 47 TYR n 1 48 SER n 1 49 LYS n 1 50 GLY n 1 51 ILE n 1 52 ILE n 1 53 PRO n 1 54 LEU n 1 55 SER n 1 56 ALA n 1 57 ILE n 1 58 SER n 1 59 THR n 1 60 VAL n 1 61 ARG n 1 62 VAL n 1 63 GLN n 1 64 GLY n 1 65 ASP n 1 66 ASN n 1 67 LYS n 1 68 PHE n 1 69 GLU n 1 70 VAL n 1 71 VAL n 1 72 THR n 1 73 THR n 1 74 GLN n 1 75 ARG n 1 76 THR n 1 77 PHE n 1 78 VAL n 1 79 PHE n 1 80 ARG n 1 81 VAL n 1 82 GLU n 1 83 LYS n 1 84 GLU n 1 85 GLU n 1 86 GLU n 1 87 ARG n 1 88 ASN n 1 89 ASP n 1 90 TRP n 1 91 ILE n 1 92 SER n 1 93 ILE n 1 94 LEU n 1 95 LEU n 1 96 ASN n 1 97 ALA n 1 98 LEU n 1 99 LYS n 1 100 SER n 1 101 GLN n 1 102 SER n 1 103 LEU n 1 104 THR n 1 105 SER n 1 106 GLN n 1 107 SER n 1 108 GLN n 1 109 ALA n 1 110 SER n 1 111 GLY n 1 112 PRO n 1 113 SER n 1 114 SER n 1 115 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ARAP2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell-free protein synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050125-06 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CEND1_HUMAN _struct_ref.pdbx_db_accession Q8WZ64 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFEVVTTQRTFVFRVEKEEER NDWISILLNALKSQSLTSQSQA ; _struct_ref.pdbx_align_begin 483 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2COD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8WZ64 _struct_ref_seq.db_align_beg 483 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 584 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2COD GLY A 1 ? UNP Q8WZ64 ? ? 'expression tag' 1 1 1 2COD SER A 2 ? UNP Q8WZ64 ? ? 'expression tag' 2 2 1 2COD SER A 3 ? UNP Q8WZ64 ? ? 'expression tag' 3 3 1 2COD GLY A 4 ? UNP Q8WZ64 ? ? 'expression tag' 4 4 1 2COD SER A 5 ? UNP Q8WZ64 ? ? 'expression tag' 5 5 1 2COD SER A 6 ? UNP Q8WZ64 ? ? 'expression tag' 6 6 1 2COD GLY A 7 ? UNP Q8WZ64 ? ? 'expression tag' 7 7 1 2COD SER A 110 ? UNP Q8WZ64 ? ? 'expression tag' 110 8 1 2COD GLY A 111 ? UNP Q8WZ64 ? ? 'expression tag' 111 9 1 2COD PRO A 112 ? UNP Q8WZ64 ? ? 'expression tag' 112 10 1 2COD SER A 113 ? UNP Q8WZ64 ? ? 'expression tag' 113 11 1 2COD SER A 114 ? UNP Q8WZ64 ? ? 'expression tag' 114 12 1 2COD GLY A 115 ? UNP Q8WZ64 ? ? 'expression tag' 115 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.62mM PH domain U-13C, 15N; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2COD _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2COD _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2COD _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guentert, P.' 5 refinement CYANA 2.0.17 'Guentert, P.' 6 # _exptl.entry_id 2COD _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2COD _struct.title 'Solution structure of the N-terminal PH domain of ARAP2 protein from human' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2COD _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;Arf GAP and Rho GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 84 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 101 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 84 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 101 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 51 ? PRO A 53 ? ILE A 51 PRO A 53 A 2 SER A 36 ? TYR A 40 ? SER A 36 TYR A 40 A 3 GLN A 26 ? PHE A 32 ? GLN A 26 PHE A 32 A 4 LYS A 10 ? LYS A 16 ? LYS A 10 LYS A 16 A 5 THR A 76 ? ARG A 80 ? THR A 76 ARG A 80 A 6 LYS A 67 ? VAL A 71 ? LYS A 67 VAL A 71 A 7 THR A 59 ? VAL A 62 ? THR A 59 VAL A 62 # _database_PDB_matrix.entry_id 2COD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2COD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 MET 24 24 24 MET MET A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 TRP 29 29 29 TRP TRP A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 TRP 90 90 90 TRP TRP A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 GLY 115 115 115 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-17 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; 700 ;SHEET DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 20 ? ? -111.14 60.13 2 1 LYS A 22 ? ? 38.95 33.83 3 1 ILE A 57 ? ? -50.18 103.37 4 1 GLN A 74 ? ? -83.88 -75.36 5 1 PRO A 112 ? ? -69.75 93.54 6 2 TRP A 13 ? ? -56.52 107.46 7 2 ILE A 57 ? ? -57.65 103.98 8 2 ARG A 75 ? ? -170.64 120.57 9 2 THR A 76 ? ? -39.16 149.76 10 2 ILE A 91 ? ? -48.36 -71.82 11 3 LYS A 10 ? ? -170.35 139.99 12 3 LEU A 17 ? ? -108.33 73.59 13 3 PRO A 19 ? ? -69.72 -177.79 14 3 ARG A 23 ? ? 36.22 45.65 15 3 ASN A 42 ? ? -63.05 91.48 16 3 LYS A 44 ? ? -103.44 -61.20 17 3 ILE A 57 ? ? -54.10 107.41 18 3 ASP A 65 ? ? -58.19 -177.20 19 3 GLN A 74 ? ? -133.14 -52.40 20 4 SER A 3 ? ? -48.17 150.88 21 4 LEU A 17 ? ? -65.00 93.92 22 4 MET A 24 ? ? -124.27 -57.22 23 4 LYS A 44 ? ? -66.21 84.74 24 4 GLU A 45 ? ? -68.86 94.53 25 4 TYR A 47 ? ? -89.29 40.98 26 4 THR A 73 ? ? -39.66 -38.42 27 4 GLN A 74 ? ? -134.96 -62.75 28 5 LEU A 17 ? ? -100.34 78.27 29 5 ASN A 42 ? ? -54.75 106.06 30 5 ASN A 66 ? ? 35.88 37.06 31 5 THR A 104 ? ? 32.16 41.70 32 6 LYS A 10 ? ? -171.54 147.34 33 6 LEU A 17 ? ? -104.37 72.50 34 6 MET A 24 ? ? -35.33 127.15 35 6 ASN A 42 ? ? -34.80 -39.82 36 6 GLU A 43 ? ? -90.96 -65.54 37 6 ILE A 57 ? ? -55.55 98.64 38 6 ARG A 75 ? ? -174.94 121.48 39 6 THR A 76 ? ? -34.91 141.21 40 6 SER A 107 ? ? -53.81 96.49 41 7 PRO A 19 ? ? -69.76 -164.22 42 7 TYR A 47 ? ? -39.67 134.84 43 7 ASP A 65 ? ? -52.86 -175.29 44 7 ASP A 89 ? ? -64.99 -72.03 45 7 GLN A 106 ? ? -85.51 41.22 46 8 LEU A 17 ? ? -61.07 75.16 47 8 PRO A 19 ? ? -69.81 -169.51 48 8 MET A 24 ? ? -51.80 86.14 49 8 PHE A 25 ? ? -35.92 -73.40 50 8 GLN A 26 ? ? -164.90 111.58 51 8 LYS A 44 ? ? -34.78 146.41 52 8 TYR A 47 ? ? 37.82 50.46 53 8 ILE A 57 ? ? -50.73 105.58 54 8 ASN A 66 ? ? 39.17 38.63 55 8 ARG A 75 ? ? -170.01 125.75 56 8 LEU A 103 ? ? 37.54 49.32 57 9 SER A 5 ? ? -51.61 105.99 58 9 LEU A 17 ? ? -62.67 74.74 59 9 PRO A 19 ? ? -69.79 -179.08 60 9 LYS A 22 ? ? -165.31 115.22 61 9 ARG A 23 ? ? -36.24 -70.34 62 9 PHE A 25 ? ? -35.60 -70.93 63 9 LYS A 44 ? ? -39.61 143.82 64 9 MET A 46 ? ? -117.11 67.68 65 9 GLN A 74 ? ? -99.35 -70.30 66 9 PRO A 112 ? ? -69.76 1.78 67 10 SER A 2 ? ? -68.12 92.94 68 10 LYS A 10 ? ? -173.60 143.10 69 10 SER A 18 ? ? 70.82 54.67 70 10 GLN A 20 ? ? -132.07 -59.15 71 10 LYS A 22 ? ? -170.34 118.86 72 10 PHE A 25 ? ? -46.51 100.06 73 10 ASN A 42 ? ? -48.50 176.13 74 10 GLU A 43 ? ? -65.58 89.60 75 10 SER A 48 ? ? -104.60 44.34 76 10 ILE A 57 ? ? -47.70 91.86 77 10 ARG A 75 ? ? -172.10 137.92 78 10 LEU A 103 ? ? -174.81 133.27 79 10 ALA A 109 ? ? -165.15 105.43 80 10 SER A 110 ? ? -55.56 101.33 81 10 PRO A 112 ? ? -69.75 -175.88 82 10 SER A 113 ? ? -173.60 126.24 83 11 LYS A 10 ? ? -173.30 142.96 84 11 ARG A 23 ? ? -130.30 -55.38 85 11 TYR A 47 ? ? -53.67 -176.36 86 11 ILE A 57 ? ? -58.84 106.39 87 11 ARG A 75 ? ? -173.24 135.92 88 11 ALA A 109 ? ? -34.09 136.42 89 12 ARG A 23 ? ? -55.55 94.79 90 12 ASN A 42 ? ? -87.00 45.94 91 12 ILE A 57 ? ? -54.49 92.73 92 12 ASP A 65 ? ? -55.96 -177.41 93 12 GLN A 74 ? ? -92.70 -66.39 94 12 THR A 104 ? ? 37.67 29.73 95 12 SER A 105 ? ? -34.74 133.25 96 13 PRO A 19 ? ? -69.76 -167.58 97 13 GLN A 20 ? ? -95.81 42.72 98 13 ARG A 23 ? ? -99.63 -68.62 99 13 PHE A 25 ? ? -47.38 161.76 100 13 GLU A 43 ? ? -82.04 -70.05 101 13 GLU A 45 ? ? -86.56 44.57 102 13 ILE A 57 ? ? -54.05 92.88 103 13 SER A 102 ? ? -97.33 55.03 104 13 THR A 104 ? ? -68.97 87.08 105 13 ALA A 109 ? ? -124.68 -66.06 106 14 SER A 5 ? ? -173.28 132.15 107 14 GLU A 45 ? ? -37.18 124.88 108 14 ARG A 75 ? ? -172.49 131.18 109 14 THR A 104 ? ? 34.77 40.27 110 14 GLN A 106 ? ? -41.68 156.80 111 14 SER A 107 ? ? -50.84 104.94 112 14 ALA A 109 ? ? -35.12 125.57 113 14 PRO A 112 ? ? -69.69 -174.39 114 15 LYS A 10 ? ? -170.51 140.15 115 15 LEU A 17 ? ? -46.31 101.15 116 15 GLN A 20 ? ? -50.90 104.45 117 15 ARG A 23 ? ? -68.97 81.17 118 15 LYS A 49 ? ? -173.02 142.52 119 15 ILE A 57 ? ? -51.13 93.76 120 15 ASP A 65 ? ? -55.37 -176.28 121 15 GLN A 74 ? ? -83.82 -75.67 122 15 GLN A 106 ? ? -82.44 44.98 123 15 GLN A 108 ? ? -38.29 123.52 124 16 PRO A 19 ? ? -69.81 -165.92 125 16 TYR A 47 ? ? -37.60 110.78 126 16 GLN A 74 ? ? 49.55 24.99 127 16 LEU A 103 ? ? -48.47 161.91 128 16 GLN A 108 ? ? -40.85 101.36 129 16 ALA A 109 ? ? -173.67 148.30 130 16 PRO A 112 ? ? -69.76 -179.47 131 17 SER A 5 ? ? -81.06 43.34 132 17 LYS A 10 ? ? -170.67 137.21 133 17 ARG A 23 ? ? -46.41 163.72 134 17 TYR A 47 ? ? -163.79 118.67 135 17 LEU A 54 ? ? -39.67 -38.57 136 17 ILE A 57 ? ? -52.80 106.05 137 17 ASP A 65 ? ? -51.69 -174.01 138 17 ASN A 66 ? ? -75.29 48.21 139 17 ARG A 75 ? ? -171.60 120.40 140 17 THR A 76 ? ? -35.43 138.88 141 17 PRO A 112 ? ? -69.73 -177.46 142 18 LEU A 17 ? ? -84.38 31.48 143 18 PRO A 19 ? ? -69.73 -165.31 144 18 LYS A 22 ? ? -52.34 -176.07 145 18 GLN A 26 ? ? -128.08 -75.16 146 18 LYS A 27 ? ? -175.12 117.65 147 18 TYR A 40 ? ? -164.28 106.49 148 18 ASN A 42 ? ? -133.38 -58.82 149 18 GLU A 45 ? ? -44.93 161.68 150 18 MET A 46 ? ? -92.39 44.66 151 18 ASP A 65 ? ? -62.69 -176.08 152 18 GLN A 74 ? ? -49.68 -72.65 153 18 THR A 104 ? ? -34.35 126.07 154 19 PRO A 19 ? ? -69.77 -175.98 155 19 ARG A 23 ? ? -77.60 46.93 156 19 SER A 48 ? ? -36.20 118.43 157 19 ILE A 57 ? ? -50.80 92.62 158 19 ASN A 66 ? ? 35.63 44.74 159 19 ARG A 75 ? ? -172.90 116.83 160 19 THR A 76 ? ? -37.06 140.84 161 19 PRO A 112 ? ? -69.77 -177.78 162 20 MET A 24 ? ? -173.25 116.91 163 20 TYR A 47 ? ? 39.97 34.66 164 20 LEU A 54 ? ? -38.44 -37.65 165 20 ASP A 65 ? ? -101.42 -65.58 166 20 ARG A 75 ? ? -170.92 111.49 #