HEADER GENE REGULATION 19-MAY-05 2CPR TITLE SOLUTION STRUCTURE OF THE HRDC DOMAIN OF HUMAN EXOSOME COMPONENT 10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOSOME COMPONENT 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HRDC; COMPND 5 SYNONYM: POLYMYOSITIS/SCLERODERMA AUTOANTIGEN 2, AUTOANTIGEN PM/SCL COMPND 6 2, POLYMYOSITIS/SCLERODERMA AUTOANTIGEN 100 KDA, PM/SCL-100, P100 COMPND 7 POLYMYOSITIS-SCLERODERMA OVERLAP SYNDROME ASSOCIATED AUTOANTIGEN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EXOSC10; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040906-09; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS HRDC, HELIX-BUNDLE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CPR 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CPR 1 VERSN REVDAT 1 19-NOV-05 2CPR 0 JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HRDC DOMAIN OF HUMAN EXOSOME JRNL TITL 2 COMPONENT 10 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CPR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024485. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.45MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801/20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.925, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 478 109.49 -164.78 REMARK 500 1 SER A 481 42.30 -89.08 REMARK 500 1 PRO A 484 84.49 -69.74 REMARK 500 1 PHE A 486 78.35 -119.28 REMARK 500 1 THR A 487 127.69 -174.12 REMARK 500 1 ASP A 488 49.12 -88.59 REMARK 500 1 SER A 490 46.13 36.10 REMARK 500 1 ARG A 496 45.63 -99.05 REMARK 500 1 LYS A 499 177.33 -52.05 REMARK 500 1 HIS A 501 149.20 -37.32 REMARK 500 1 ASN A 556 106.96 -165.89 REMARK 500 1 PRO A 557 -178.00 -69.76 REMARK 500 1 LEU A 561 -73.43 -96.59 REMARK 500 1 VAL A 562 -36.67 -37.34 REMARK 500 1 LEU A 582 152.89 -43.66 REMARK 500 1 LYS A 583 121.75 -36.73 REMARK 500 1 PRO A 596 -173.68 -69.74 REMARK 500 2 ILE A 485 149.50 -33.99 REMARK 500 2 GLU A 489 75.35 -62.44 REMARK 500 2 ARG A 496 30.51 -94.11 REMARK 500 2 THR A 504 -71.46 -36.11 REMARK 500 2 LEU A 532 117.86 -164.62 REMARK 500 2 LEU A 561 -63.43 -102.51 REMARK 500 2 VAL A 590 51.39 37.35 REMARK 500 2 LYS A 591 107.15 -58.97 REMARK 500 3 PHE A 486 -69.82 -90.55 REMARK 500 3 THR A 487 -175.06 -57.59 REMARK 500 3 ARG A 496 46.29 -97.41 REMARK 500 3 ASP A 525 43.01 34.81 REMARK 500 3 ASN A 556 105.02 -162.42 REMARK 500 3 VAL A 562 -37.77 -39.63 REMARK 500 3 SER A 584 123.61 -174.70 REMARK 500 3 GLU A 585 98.23 -63.53 REMARK 500 3 SER A 593 108.47 -35.52 REMARK 500 3 PRO A 596 3.43 -69.80 REMARK 500 3 SER A 597 134.77 -31.14 REMARK 500 3 SER A 598 176.44 -48.32 REMARK 500 4 THR A 487 25.24 41.87 REMARK 500 4 GLU A 493 -31.39 -36.15 REMARK 500 4 ARG A 496 48.14 -94.16 REMARK 500 4 GLN A 498 40.65 -81.96 REMARK 500 4 LYS A 499 39.86 34.41 REMARK 500 4 ASP A 525 51.64 72.00 REMARK 500 4 TYR A 530 -67.26 -124.64 REMARK 500 4 PRO A 533 -173.02 -69.73 REMARK 500 4 LEU A 561 -69.98 -100.34 REMARK 500 4 VAL A 562 -36.30 -39.67 REMARK 500 4 ALA A 588 41.74 38.29 REMARK 500 5 SER A 480 -51.95 -132.54 REMARK 500 5 ASP A 525 42.79 70.00 REMARK 500 REMARK 500 THIS ENTRY HAS 218 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003374.1 RELATED DB: TARGETDB DBREF 2CPR A 483 593 UNP Q01780 EXOSX_HUMAN 483 593 SEQADV 2CPR GLY A 476 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR SER A 477 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR SER A 478 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR GLY A 479 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR SER A 480 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR SER A 481 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR GLY A 482 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR SER A 594 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR GLY A 595 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR PRO A 596 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR SER A 597 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR SER A 598 UNP Q01780 CLONING ARTIFACT SEQADV 2CPR GLY A 599 UNP Q01780 CLONING ARTIFACT SEQRES 1 A 124 GLY SER SER GLY SER SER GLY LYS PRO ILE PHE THR ASP SEQRES 2 A 124 GLU SER TYR LEU GLU LEU TYR ARG LYS GLN LYS LYS HIS SEQRES 3 A 124 LEU ASN THR GLN GLN LEU THR ALA PHE GLN LEU LEU PHE SEQRES 4 A 124 ALA TRP ARG ASP LYS THR ALA ARG ARG GLU ASP GLU SER SEQRES 5 A 124 TYR GLY TYR VAL LEU PRO ASN HIS MET MET LEU LYS ILE SEQRES 6 A 124 ALA GLU GLU LEU PRO LYS GLU PRO GLN GLY ILE ILE ALA SEQRES 7 A 124 CYS CYS ASN PRO VAL PRO PRO LEU VAL ARG GLN GLN ILE SEQRES 8 A 124 ASN GLU MET HIS LEU LEU ILE GLN GLN ALA ARG GLU MET SEQRES 9 A 124 PRO LEU LEU LYS SER GLU VAL ALA ALA GLY VAL LYS LYS SEQRES 10 A 124 SER SER GLY PRO SER SER GLY HELIX 1 1 ASN A 503 ALA A 521 1 19 HELIX 2 2 ASN A 534 GLU A 543 1 10 HELIX 3 3 GLN A 565 ARG A 577 1 13 CISPEP 1 ASN A 556 PRO A 557 1 -0.07 CISPEP 2 ASN A 556 PRO A 557 2 -0.06 CISPEP 3 ASN A 556 PRO A 557 3 -0.02 CISPEP 4 ASN A 556 PRO A 557 4 -0.11 CISPEP 5 ASN A 556 PRO A 557 5 -0.08 CISPEP 6 ASN A 556 PRO A 557 6 0.00 CISPEP 7 ASN A 556 PRO A 557 7 -0.08 CISPEP 8 ASN A 556 PRO A 557 8 -0.13 CISPEP 9 ASN A 556 PRO A 557 9 -0.04 CISPEP 10 ASN A 556 PRO A 557 10 -0.09 CISPEP 11 ASN A 556 PRO A 557 11 -0.04 CISPEP 12 ASN A 556 PRO A 557 12 -0.06 CISPEP 13 ASN A 556 PRO A 557 13 -0.07 CISPEP 14 ASN A 556 PRO A 557 14 -0.05 CISPEP 15 ASN A 556 PRO A 557 15 -0.04 CISPEP 16 ASN A 556 PRO A 557 16 -0.05 CISPEP 17 ASN A 556 PRO A 557 17 -0.12 CISPEP 18 ASN A 556 PRO A 557 18 -0.13 CISPEP 19 ASN A 556 PRO A 557 19 0.01 CISPEP 20 ASN A 556 PRO A 557 20 0.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1