data_2CPY # _entry.id 2CPY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CPY pdb_00002cpy 10.2210/pdb2cpy/pdb RCSB RCSB024489 ? ? WWPDB D_1000024489 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002100747.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CPY _pdbx_database_status.recvd_initial_deposition_date 2005-05-19 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsuda, K.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'solution structure of RNA binding domain 3 in RNA binding motif protein 12' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuda, K.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'RNA-binding protein 12' _entity.formula_weight 12268.664 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNA binding motif protein 12, SH3/WW domain anchor protein in the nucleus, SWAN, HRIHFB2091' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGEGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKK LNGREAFVHVVTLEDMREIEKNPPAQGKSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGEGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKK LNGREAFVHVVTLEDMREIEKNPPAQGKSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002100747.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 GLY n 1 10 ASP n 1 11 VAL n 1 12 ASN n 1 13 SER n 1 14 ALA n 1 15 LYS n 1 16 VAL n 1 17 CYS n 1 18 ALA n 1 19 HIS n 1 20 ILE n 1 21 THR n 1 22 ASN n 1 23 ILE n 1 24 PRO n 1 25 PHE n 1 26 SER n 1 27 ILE n 1 28 THR n 1 29 LYS n 1 30 MET n 1 31 ASP n 1 32 VAL n 1 33 LEU n 1 34 GLN n 1 35 PHE n 1 36 LEU n 1 37 GLU n 1 38 GLY n 1 39 ILE n 1 40 PRO n 1 41 VAL n 1 42 ASP n 1 43 GLU n 1 44 ASN n 1 45 ALA n 1 46 VAL n 1 47 HIS n 1 48 VAL n 1 49 LEU n 1 50 VAL n 1 51 ASP n 1 52 ASN n 1 53 ASN n 1 54 GLY n 1 55 GLN n 1 56 GLY n 1 57 LEU n 1 58 GLY n 1 59 GLN n 1 60 ALA n 1 61 LEU n 1 62 VAL n 1 63 GLN n 1 64 PHE n 1 65 LYS n 1 66 ASN n 1 67 GLU n 1 68 ASP n 1 69 ASP n 1 70 ALA n 1 71 ARG n 1 72 LYS n 1 73 SER n 1 74 GLU n 1 75 ARG n 1 76 LEU n 1 77 HIS n 1 78 ARG n 1 79 LYS n 1 80 LYS n 1 81 LEU n 1 82 ASN n 1 83 GLY n 1 84 ARG n 1 85 GLU n 1 86 ALA n 1 87 PHE n 1 88 VAL n 1 89 HIS n 1 90 VAL n 1 91 VAL n 1 92 THR n 1 93 LEU n 1 94 GLU n 1 95 ASP n 1 96 MET n 1 97 ARG n 1 98 GLU n 1 99 ILE n 1 100 GLU n 1 101 LYS n 1 102 ASN n 1 103 PRO n 1 104 PRO n 1 105 ALA n 1 106 GLN n 1 107 GLY n 1 108 LYS n 1 109 SER n 1 110 GLY n 1 111 PRO n 1 112 SER n 1 113 SER n 1 114 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene RBM12 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040719-13 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RBM12_HUMAN _struct_ref.pdbx_db_accession Q9NTZ6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF VHVVTLEDMREIEKNPPAQGK ; _struct_ref.pdbx_align_begin 536 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CPY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 108 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NTZ6 _struct_ref_seq.db_align_beg 536 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 636 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 536 _struct_ref_seq.pdbx_auth_seq_align_end 636 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CPY GLY A 1 ? UNP Q9NTZ6 ? ? 'cloning artifact' 529 1 1 2CPY SER A 2 ? UNP Q9NTZ6 ? ? 'cloning artifact' 530 2 1 2CPY SER A 3 ? UNP Q9NTZ6 ? ? 'cloning artifact' 531 3 1 2CPY GLY A 4 ? UNP Q9NTZ6 ? ? 'cloning artifact' 532 4 1 2CPY SER A 5 ? UNP Q9NTZ6 ? ? 'cloning artifact' 533 5 1 2CPY SER A 6 ? UNP Q9NTZ6 ? ? 'cloning artifact' 534 6 1 2CPY GLY A 7 ? UNP Q9NTZ6 ? ? 'cloning artifact' 535 7 1 2CPY SER A 109 ? UNP Q9NTZ6 ? ? 'cloning artifact' 637 8 1 2CPY GLY A 110 ? UNP Q9NTZ6 ? ? 'cloning artifact' 638 9 1 2CPY PRO A 111 ? UNP Q9NTZ6 ? ? 'cloning artifact' 639 10 1 2CPY SER A 112 ? UNP Q9NTZ6 ? ? 'cloning artifact' 640 11 1 2CPY SER A 113 ? UNP Q9NTZ6 ? ? 'cloning artifact' 641 12 1 2CPY GLY A 114 ? UNP Q9NTZ6 ? ? 'cloning artifact' 642 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.48mM 13C/15N-PROTEIN, 20mM d-Tris-HCl (pH 7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2CPY _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2CPY _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2CPY _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A' 3 'data analysis' KUJIRA 0.9297 'Kobayashi, N' 4 'structure solution' CYANA 2.0.17 'Guntert, P' 5 refinement CYANA 2.0.17 'Guntert, P' 6 # _exptl.entry_id 2CPY _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2CPY _struct.title 'solution structure of RNA binding domain 3 in RNA binding motif protein 12' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CPY _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 28 ? LEU A 36 ? THR A 556 LEU A 564 1 ? 9 HELX_P HELX_P2 2 ASN A 66 ? GLU A 74 ? ASN A 594 GLU A 602 1 ? 9 HELX_P HELX_P3 3 ARG A 75 ? HIS A 77 ? ARG A 603 HIS A 605 5 ? 3 HELX_P HELX_P4 4 THR A 92 ? ASN A 102 ? THR A 620 ASN A 630 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 46 ? VAL A 48 ? VAL A 574 VAL A 576 A 2 ALA A 60 ? GLN A 63 ? ALA A 588 GLN A 591 A 3 CYS A 17 ? THR A 21 ? CYS A 545 THR A 549 A 4 ARG A 84 ? VAL A 91 ? ARG A 612 VAL A 619 A 5 LYS A 79 ? LEU A 81 ? LYS A 607 LEU A 609 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 47 ? N HIS A 575 O LEU A 61 ? O LEU A 589 A 2 3 O ALA A 60 ? O ALA A 588 N ILE A 20 ? N ILE A 548 A 3 4 N HIS A 19 ? N HIS A 547 O HIS A 89 ? O HIS A 617 A 4 5 O ARG A 84 ? O ARG A 612 N LEU A 81 ? N LEU A 609 # _database_PDB_matrix.entry_id 2CPY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CPY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 529 529 GLY GLY A . n A 1 2 SER 2 530 530 SER SER A . n A 1 3 SER 3 531 531 SER SER A . n A 1 4 GLY 4 532 532 GLY GLY A . n A 1 5 SER 5 533 533 SER SER A . n A 1 6 SER 6 534 534 SER SER A . n A 1 7 GLY 7 535 535 GLY GLY A . n A 1 8 GLU 8 536 536 GLU GLU A . n A 1 9 GLY 9 537 537 GLY GLY A . n A 1 10 ASP 10 538 538 ASP ASP A . n A 1 11 VAL 11 539 539 VAL VAL A . n A 1 12 ASN 12 540 540 ASN ASN A . n A 1 13 SER 13 541 541 SER SER A . n A 1 14 ALA 14 542 542 ALA ALA A . n A 1 15 LYS 15 543 543 LYS LYS A . n A 1 16 VAL 16 544 544 VAL VAL A . n A 1 17 CYS 17 545 545 CYS CYS A . n A 1 18 ALA 18 546 546 ALA ALA A . n A 1 19 HIS 19 547 547 HIS HIS A . n A 1 20 ILE 20 548 548 ILE ILE A . n A 1 21 THR 21 549 549 THR THR A . n A 1 22 ASN 22 550 550 ASN ASN A . n A 1 23 ILE 23 551 551 ILE ILE A . n A 1 24 PRO 24 552 552 PRO PRO A . n A 1 25 PHE 25 553 553 PHE PHE A . n A 1 26 SER 26 554 554 SER SER A . n A 1 27 ILE 27 555 555 ILE ILE A . n A 1 28 THR 28 556 556 THR THR A . n A 1 29 LYS 29 557 557 LYS LYS A . n A 1 30 MET 30 558 558 MET MET A . n A 1 31 ASP 31 559 559 ASP ASP A . n A 1 32 VAL 32 560 560 VAL VAL A . n A 1 33 LEU 33 561 561 LEU LEU A . n A 1 34 GLN 34 562 562 GLN GLN A . n A 1 35 PHE 35 563 563 PHE PHE A . n A 1 36 LEU 36 564 564 LEU LEU A . n A 1 37 GLU 37 565 565 GLU GLU A . n A 1 38 GLY 38 566 566 GLY GLY A . n A 1 39 ILE 39 567 567 ILE ILE A . n A 1 40 PRO 40 568 568 PRO PRO A . n A 1 41 VAL 41 569 569 VAL VAL A . n A 1 42 ASP 42 570 570 ASP ASP A . n A 1 43 GLU 43 571 571 GLU GLU A . n A 1 44 ASN 44 572 572 ASN ASN A . n A 1 45 ALA 45 573 573 ALA ALA A . n A 1 46 VAL 46 574 574 VAL VAL A . n A 1 47 HIS 47 575 575 HIS HIS A . n A 1 48 VAL 48 576 576 VAL VAL A . n A 1 49 LEU 49 577 577 LEU LEU A . n A 1 50 VAL 50 578 578 VAL VAL A . n A 1 51 ASP 51 579 579 ASP ASP A . n A 1 52 ASN 52 580 580 ASN ASN A . n A 1 53 ASN 53 581 581 ASN ASN A . n A 1 54 GLY 54 582 582 GLY GLY A . n A 1 55 GLN 55 583 583 GLN GLN A . n A 1 56 GLY 56 584 584 GLY GLY A . n A 1 57 LEU 57 585 585 LEU LEU A . n A 1 58 GLY 58 586 586 GLY GLY A . n A 1 59 GLN 59 587 587 GLN GLN A . n A 1 60 ALA 60 588 588 ALA ALA A . n A 1 61 LEU 61 589 589 LEU LEU A . n A 1 62 VAL 62 590 590 VAL VAL A . n A 1 63 GLN 63 591 591 GLN GLN A . n A 1 64 PHE 64 592 592 PHE PHE A . n A 1 65 LYS 65 593 593 LYS LYS A . n A 1 66 ASN 66 594 594 ASN ASN A . n A 1 67 GLU 67 595 595 GLU GLU A . n A 1 68 ASP 68 596 596 ASP ASP A . n A 1 69 ASP 69 597 597 ASP ASP A . n A 1 70 ALA 70 598 598 ALA ALA A . n A 1 71 ARG 71 599 599 ARG ARG A . n A 1 72 LYS 72 600 600 LYS LYS A . n A 1 73 SER 73 601 601 SER SER A . n A 1 74 GLU 74 602 602 GLU GLU A . n A 1 75 ARG 75 603 603 ARG ARG A . n A 1 76 LEU 76 604 604 LEU LEU A . n A 1 77 HIS 77 605 605 HIS HIS A . n A 1 78 ARG 78 606 606 ARG ARG A . n A 1 79 LYS 79 607 607 LYS LYS A . n A 1 80 LYS 80 608 608 LYS LYS A . n A 1 81 LEU 81 609 609 LEU LEU A . n A 1 82 ASN 82 610 610 ASN ASN A . n A 1 83 GLY 83 611 611 GLY GLY A . n A 1 84 ARG 84 612 612 ARG ARG A . n A 1 85 GLU 85 613 613 GLU GLU A . n A 1 86 ALA 86 614 614 ALA ALA A . n A 1 87 PHE 87 615 615 PHE PHE A . n A 1 88 VAL 88 616 616 VAL VAL A . n A 1 89 HIS 89 617 617 HIS HIS A . n A 1 90 VAL 90 618 618 VAL VAL A . n A 1 91 VAL 91 619 619 VAL VAL A . n A 1 92 THR 92 620 620 THR THR A . n A 1 93 LEU 93 621 621 LEU LEU A . n A 1 94 GLU 94 622 622 GLU GLU A . n A 1 95 ASP 95 623 623 ASP ASP A . n A 1 96 MET 96 624 624 MET MET A . n A 1 97 ARG 97 625 625 ARG ARG A . n A 1 98 GLU 98 626 626 GLU GLU A . n A 1 99 ILE 99 627 627 ILE ILE A . n A 1 100 GLU 100 628 628 GLU GLU A . n A 1 101 LYS 101 629 629 LYS LYS A . n A 1 102 ASN 102 630 630 ASN ASN A . n A 1 103 PRO 103 631 631 PRO PRO A . n A 1 104 PRO 104 632 632 PRO PRO A . n A 1 105 ALA 105 633 633 ALA ALA A . n A 1 106 GLN 106 634 634 GLN GLN A . n A 1 107 GLY 107 635 635 GLY GLY A . n A 1 108 LYS 108 636 636 LYS LYS A . n A 1 109 SER 109 637 637 SER SER A . n A 1 110 GLY 110 638 638 GLY GLY A . n A 1 111 PRO 111 639 639 PRO PRO A . n A 1 112 SER 112 640 640 SER SER A . n A 1 113 SER 113 641 641 SER SER A . n A 1 114 GLY 114 642 642 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 538 ? ? -34.42 135.97 2 1 VAL A 539 ? ? -40.35 103.91 3 1 PRO A 631 ? ? -46.47 169.65 4 1 PRO A 632 ? ? -46.15 155.36 5 2 SER A 530 ? ? -56.38 105.32 6 2 ARG A 599 ? ? -37.60 -29.45 7 2 ALA A 633 ? ? -124.43 -52.62 8 2 GLN A 634 ? ? -95.30 42.68 9 3 SER A 533 ? ? -59.25 99.57 10 3 VAL A 539 ? ? -84.71 39.34 11 3 ASN A 540 ? ? -38.03 157.15 12 3 SER A 541 ? ? -39.18 99.34 13 3 PRO A 568 ? ? -44.64 100.15 14 3 PRO A 639 ? ? -78.52 38.03 15 4 PRO A 552 ? ? -47.44 107.07 16 4 PRO A 631 ? ? -45.30 165.82 17 4 LYS A 636 ? ? 33.62 52.99 18 5 PRO A 568 ? ? -47.62 109.16 19 5 GLN A 634 ? ? 73.11 47.35 20 6 SER A 530 ? ? -97.11 42.51 21 6 PRO A 568 ? ? -45.04 92.66 22 6 GLN A 634 ? ? -49.25 98.59 23 6 PRO A 639 ? ? -45.30 163.10 24 7 SER A 530 ? ? -65.38 86.02 25 7 SER A 541 ? ? -98.84 47.87 26 7 PRO A 568 ? ? -47.92 101.91 27 8 SER A 533 ? ? -131.33 -55.68 28 8 ASP A 538 ? ? -172.34 123.61 29 8 LYS A 543 ? ? -69.93 94.74 30 8 ASP A 623 ? ? -39.44 -38.15 31 8 ALA A 633 ? ? -68.46 92.46 32 8 GLN A 634 ? ? -60.12 91.32 33 9 ASP A 538 ? ? -59.15 102.77 34 9 SER A 541 ? ? -118.81 73.67 35 9 PHE A 553 ? ? -83.60 36.39 36 9 GLN A 634 ? ? -57.89 170.22 37 9 PRO A 639 ? ? -78.75 36.86 38 9 SER A 640 ? ? -39.05 117.79 39 10 SER A 531 ? ? -36.06 106.53 40 10 SER A 534 ? ? -102.29 42.14 41 10 ASP A 538 ? ? -53.69 172.01 42 10 SER A 541 ? ? -112.92 78.41 43 10 ASN A 581 ? ? -97.80 33.05 44 10 ASP A 596 ? ? -39.95 -39.20 45 10 PRO A 639 ? ? -45.48 154.29 46 11 SER A 534 ? ? -34.68 130.76 47 11 LYS A 543 ? ? -66.52 97.58 48 11 PHE A 553 ? ? -87.48 31.99 49 11 PRO A 568 ? ? -46.41 109.53 50 12 LEU A 585 ? ? -81.84 42.38 51 12 LYS A 593 ? ? -91.25 -63.15 52 12 PRO A 631 ? ? -46.74 153.38 53 12 GLN A 634 ? ? -169.13 106.80 54 12 SER A 637 ? ? -103.97 43.53 55 12 SER A 641 ? ? -122.26 -55.60 56 13 VAL A 539 ? ? -95.49 34.10 57 13 SER A 541 ? ? -99.32 43.41 58 13 PRO A 568 ? ? -44.58 104.85 59 13 SER A 640 ? ? -39.24 140.31 60 14 PHE A 553 ? ? -84.29 33.41 61 14 PRO A 631 ? ? -45.78 156.05 62 14 ALA A 633 ? ? -103.47 -61.57 63 14 SER A 640 ? ? 37.67 54.32 64 15 GLU A 536 ? ? -133.17 -41.65 65 15 VAL A 539 ? ? -94.16 45.75 66 15 SER A 541 ? ? -103.94 78.36 67 15 ASP A 570 ? ? -54.29 -175.12 68 16 SER A 533 ? ? 34.57 53.28 69 16 ASN A 550 ? ? 70.97 36.85 70 16 PHE A 553 ? ? -85.80 35.38 71 16 LEU A 585 ? ? -82.92 37.94 72 16 PRO A 631 ? ? -44.21 157.21 73 16 PRO A 639 ? ? -79.96 31.08 74 16 SER A 641 ? ? -65.62 87.20 75 17 ASN A 550 ? ? 70.74 32.21 76 17 ALA A 573 ? ? -38.93 -37.12 77 17 LEU A 585 ? ? -87.09 41.47 78 18 SER A 530 ? ? 36.18 42.17 79 18 GLU A 536 ? ? -121.78 -54.80 80 18 ASN A 581 ? ? -93.84 31.05 81 18 LEU A 585 ? ? -84.32 46.16 82 19 GLU A 536 ? ? -121.81 -55.19 83 19 SER A 541 ? ? -119.51 79.76 84 19 PHE A 553 ? ? -88.51 31.27 85 19 ASN A 581 ? ? -92.55 32.32 86 19 PRO A 639 ? ? -76.99 41.11 87 19 SER A 641 ? ? -37.25 118.58 88 20 ASN A 540 ? ? -34.76 -71.44 89 20 LYS A 543 ? ? -69.12 87.32 90 20 PHE A 553 ? ? -86.03 34.19 91 20 LEU A 564 ? ? -85.19 30.90 92 20 ASP A 570 ? ? -55.05 175.85 93 20 ASN A 630 ? ? -117.57 76.82 94 20 PRO A 631 ? ? -45.86 152.00 #