HEADER RNA BINDING PROTEIN 19-MAY-05 2CPY TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN 3 IN RNA BINDING MOTIF TITLE 2 PROTEIN 12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: RNA BINDING MOTIF PROTEIN 12, SH3/WW DOMAIN ANCHOR PROTEIN COMPND 6 IN THE NUCLEUS, SWAN, HRIHFB2091; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM12; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040719-13; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CPY 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CPY 1 VERSN REVDAT 1 19-NOV-05 2CPY 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN 3 IN RNA BINDING JRNL TITL 2 MOTIF PROTEIN 12 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CPY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024489. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.48MM 13C/15N-PROTEIN, 20MM D REMARK 210 -TRIS-HCL (PH 7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9297, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 538 135.97 -34.42 REMARK 500 1 VAL A 539 103.91 -40.35 REMARK 500 1 PRO A 631 169.65 -46.47 REMARK 500 1 PRO A 632 155.36 -46.15 REMARK 500 2 SER A 530 105.32 -56.38 REMARK 500 2 ARG A 599 -29.45 -37.60 REMARK 500 2 ALA A 633 -52.62 -124.43 REMARK 500 2 GLN A 634 42.68 -95.30 REMARK 500 3 SER A 533 99.57 -59.25 REMARK 500 3 VAL A 539 39.34 -84.71 REMARK 500 3 ASN A 540 157.15 -38.03 REMARK 500 3 SER A 541 99.34 -39.18 REMARK 500 3 PRO A 568 100.15 -44.64 REMARK 500 3 PRO A 639 38.03 -78.52 REMARK 500 4 PRO A 552 107.07 -47.44 REMARK 500 4 PRO A 631 165.82 -45.30 REMARK 500 4 LYS A 636 52.99 33.62 REMARK 500 5 PRO A 568 109.16 -47.62 REMARK 500 5 GLN A 634 47.35 73.11 REMARK 500 6 SER A 530 42.51 -97.11 REMARK 500 6 PRO A 568 92.66 -45.04 REMARK 500 6 GLN A 634 98.59 -49.25 REMARK 500 6 PRO A 639 163.10 -45.30 REMARK 500 7 SER A 530 86.02 -65.38 REMARK 500 7 SER A 541 47.87 -98.84 REMARK 500 7 PRO A 568 101.91 -47.92 REMARK 500 8 SER A 533 -55.68 -131.33 REMARK 500 8 ASP A 538 123.61 -172.34 REMARK 500 8 LYS A 543 94.74 -69.93 REMARK 500 8 ASP A 623 -38.15 -39.44 REMARK 500 8 ALA A 633 92.46 -68.46 REMARK 500 8 GLN A 634 91.32 -60.12 REMARK 500 9 ASP A 538 102.77 -59.15 REMARK 500 9 SER A 541 73.67 -118.81 REMARK 500 9 PHE A 553 36.39 -83.60 REMARK 500 9 GLN A 634 170.22 -57.89 REMARK 500 9 PRO A 639 36.86 -78.75 REMARK 500 9 SER A 640 117.79 -39.05 REMARK 500 10 SER A 531 106.53 -36.06 REMARK 500 10 SER A 534 42.14 -102.29 REMARK 500 10 ASP A 538 172.01 -53.69 REMARK 500 10 SER A 541 78.41 -112.92 REMARK 500 10 ASN A 581 33.05 -97.80 REMARK 500 10 ASP A 596 -39.20 -39.95 REMARK 500 10 PRO A 639 154.29 -45.48 REMARK 500 11 SER A 534 130.76 -34.68 REMARK 500 11 LYS A 543 97.58 -66.52 REMARK 500 11 PHE A 553 31.99 -87.48 REMARK 500 11 PRO A 568 109.53 -46.41 REMARK 500 12 LEU A 585 42.38 -81.84 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100747.2 RELATED DB: TARGETDB DBREF 2CPY A 536 636 UNP Q9NTZ6 RBM12_HUMAN 536 636 SEQADV 2CPY GLY A 529 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY SER A 530 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY SER A 531 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY GLY A 532 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY SER A 533 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY SER A 534 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY GLY A 535 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY SER A 637 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY GLY A 638 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY PRO A 639 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY SER A 640 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY SER A 641 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2CPY GLY A 642 UNP Q9NTZ6 CLONING ARTIFACT SEQRES 1 A 114 GLY SER SER GLY SER SER GLY GLU GLY ASP VAL ASN SER SEQRES 2 A 114 ALA LYS VAL CYS ALA HIS ILE THR ASN ILE PRO PHE SER SEQRES 3 A 114 ILE THR LYS MET ASP VAL LEU GLN PHE LEU GLU GLY ILE SEQRES 4 A 114 PRO VAL ASP GLU ASN ALA VAL HIS VAL LEU VAL ASP ASN SEQRES 5 A 114 ASN GLY GLN GLY LEU GLY GLN ALA LEU VAL GLN PHE LYS SEQRES 6 A 114 ASN GLU ASP ASP ALA ARG LYS SER GLU ARG LEU HIS ARG SEQRES 7 A 114 LYS LYS LEU ASN GLY ARG GLU ALA PHE VAL HIS VAL VAL SEQRES 8 A 114 THR LEU GLU ASP MET ARG GLU ILE GLU LYS ASN PRO PRO SEQRES 9 A 114 ALA GLN GLY LYS SER GLY PRO SER SER GLY HELIX 1 1 THR A 556 LEU A 564 1 9 HELIX 2 2 ASN A 594 GLU A 602 1 9 HELIX 3 3 ARG A 603 HIS A 605 5 3 HELIX 4 4 THR A 620 ASN A 630 1 11 SHEET 1 A 5 VAL A 574 VAL A 576 0 SHEET 2 A 5 ALA A 588 GLN A 591 -1 O LEU A 589 N HIS A 575 SHEET 3 A 5 CYS A 545 THR A 549 -1 N ILE A 548 O ALA A 588 SHEET 4 A 5 ARG A 612 VAL A 619 -1 O HIS A 617 N HIS A 547 SHEET 5 A 5 LYS A 607 LEU A 609 -1 N LEU A 609 O ARG A 612 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1