data_2CSO # _entry.id 2CSO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CSO pdb_00002cso 10.2210/pdb2cso/pdb RCSB RCSB024578 ? ? WWPDB D_1000024578 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001003763.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CSO _pdbx_database_status.recvd_initial_deposition_date 2005-05-22 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Inoue, K.' 1 'Hayashi, F.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of the DEP domain of human pleckstrin' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Inoue, K.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yokoyama, S.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Pleckstrin _entity.formula_weight 13852.312 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'DEP domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Platelet p47 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGRSIRLPETIDLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMIASSLLNEG YLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPDSGFFCEENSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGRSIRLPETIDLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMIASSLLNEG YLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPDSGFFCEENSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001003763.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ARG n 1 9 SER n 1 10 ILE n 1 11 ARG n 1 12 LEU n 1 13 PRO n 1 14 GLU n 1 15 THR n 1 16 ILE n 1 17 ASP n 1 18 LEU n 1 19 GLY n 1 20 ALA n 1 21 LEU n 1 22 TYR n 1 23 LEU n 1 24 SER n 1 25 MET n 1 26 LYS n 1 27 ASP n 1 28 THR n 1 29 GLU n 1 30 LYS n 1 31 GLY n 1 32 ILE n 1 33 LYS n 1 34 GLU n 1 35 LEU n 1 36 ASN n 1 37 LEU n 1 38 GLU n 1 39 LYS n 1 40 ASP n 1 41 LYS n 1 42 LYS n 1 43 ILE n 1 44 PHE n 1 45 ASN n 1 46 HIS n 1 47 CYS n 1 48 PHE n 1 49 THR n 1 50 GLY n 1 51 ASN n 1 52 CYS n 1 53 VAL n 1 54 ILE n 1 55 ASP n 1 56 TRP n 1 57 LEU n 1 58 VAL n 1 59 SER n 1 60 ASN n 1 61 GLN n 1 62 SER n 1 63 VAL n 1 64 ARG n 1 65 ASN n 1 66 ARG n 1 67 GLN n 1 68 GLU n 1 69 GLY n 1 70 LEU n 1 71 MET n 1 72 ILE n 1 73 ALA n 1 74 SER n 1 75 SER n 1 76 LEU n 1 77 LEU n 1 78 ASN n 1 79 GLU n 1 80 GLY n 1 81 TYR n 1 82 LEU n 1 83 GLN n 1 84 PRO n 1 85 ALA n 1 86 GLY n 1 87 ASP n 1 88 MET n 1 89 SER n 1 90 LYS n 1 91 SER n 1 92 ALA n 1 93 VAL n 1 94 ASP n 1 95 GLY n 1 96 THR n 1 97 ALA n 1 98 GLU n 1 99 ASN n 1 100 PRO n 1 101 PHE n 1 102 LEU n 1 103 ASP n 1 104 ASN n 1 105 PRO n 1 106 ASP n 1 107 ALA n 1 108 PHE n 1 109 TYR n 1 110 TYR n 1 111 PHE n 1 112 PRO n 1 113 ASP n 1 114 SER n 1 115 GLY n 1 116 PHE n 1 117 PHE n 1 118 CYS n 1 119 GLU n 1 120 GLU n 1 121 ASN n 1 122 SER n 1 123 GLY n 1 124 PRO n 1 125 SER n 1 126 SER n 1 127 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'PLEK, P47' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040621-07 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLEK_HUMAN _struct_ref.pdbx_db_accession P08567 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RSIRLPETIDLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMIASSLLNEGYLQPAGD MSKSAVDGTAENPFLDNPDAFYYFPDSGFFCEEN ; _struct_ref.pdbx_align_begin 116 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CSO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 121 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P08567 _struct_ref_seq.db_align_beg 116 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 229 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 121 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CSO GLY A 1 ? UNP P08567 ? ? 'cloning artifact' 1 1 1 2CSO SER A 2 ? UNP P08567 ? ? 'cloning artifact' 2 2 1 2CSO SER A 3 ? UNP P08567 ? ? 'cloning artifact' 3 3 1 2CSO GLY A 4 ? UNP P08567 ? ? 'cloning artifact' 4 4 1 2CSO SER A 5 ? UNP P08567 ? ? 'cloning artifact' 5 5 1 2CSO SER A 6 ? UNP P08567 ? ? 'cloning artifact' 6 6 1 2CSO GLY A 7 ? UNP P08567 ? ? 'cloning artifact' 7 7 1 2CSO SER A 122 ? UNP P08567 ? ? 'cloning artifact' 122 8 1 2CSO GLY A 123 ? UNP P08567 ? ? 'cloning artifact' 123 9 1 2CSO PRO A 124 ? UNP P08567 ? ? 'cloning artifact' 124 10 1 2CSO SER A 125 ? UNP P08567 ? ? 'cloning artifact' 125 11 1 2CSO SER A 126 ? UNP P08567 ? ? 'cloning artifact' 126 12 1 2CSO GLY A 127 ? UNP P08567 ? ? 'cloning artifact' 127 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.35mM U-15N, 13C-labeled protein; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 800 ? 2 INOVA Varian 900 ? # _pdbx_nmr_refine.entry_id 2CSO _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2CSO _pdbx_nmr_details.text 'spectrometer_id 1 for 3D_15N_separated_NOESY, spectrometer_id 2 for 3D_13C_separated_NOESY' # _pdbx_nmr_ensemble.entry_id 2CSO _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2CSO _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9296 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2CSO _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2CSO _struct.title 'Solution structure of the DEP domain of human pleckstrin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CSO _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;DEP domain, Pleckstrin, Platelet p47 protein, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 17 ? ASP A 27 ? ASP A 17 ASP A 27 1 ? 11 HELX_P HELX_P2 2 GLY A 50 ? ASN A 60 ? GLY A 50 ASN A 60 1 ? 11 HELX_P HELX_P3 3 ASN A 65 ? GLY A 80 ? ASN A 65 GLY A 80 1 ? 16 HELX_P HELX_P4 4 GLY A 86 ? GLY A 95 ? GLY A 86 GLY A 95 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 35 ? LYS A 39 ? LEU A 35 LYS A 39 A 2 LYS A 42 ? THR A 49 ? LYS A 42 THR A 49 A 3 PHE A 108 ? TYR A 110 ? PHE A 108 TYR A 110 A 4 GLN A 83 ? ALA A 85 ? GLN A 83 ALA A 85 B 1 LEU A 35 ? LYS A 39 ? LEU A 35 LYS A 39 B 2 LYS A 42 ? THR A 49 ? LYS A 42 THR A 49 B 3 CYS A 118 ? GLU A 120 ? CYS A 118 GLU A 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 39 ? N LYS A 39 O LYS A 42 ? O LYS A 42 A 2 3 N PHE A 48 ? N PHE A 48 O TYR A 109 ? O TYR A 109 A 3 4 O TYR A 110 ? O TYR A 110 N GLN A 83 ? N GLN A 83 B 1 2 N LYS A 39 ? N LYS A 39 O LYS A 42 ? O LYS A 42 B 2 3 N ILE A 43 ? N ILE A 43 O GLU A 119 ? O GLU A 119 # _database_PDB_matrix.entry_id 2CSO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CSO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 CYS 47 47 47 CYS CYS A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 CYS 52 52 52 CYS CYS A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 TRP 56 56 56 TRP TRP A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 MET 71 71 71 MET MET A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 MET 88 88 88 MET MET A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 CYS 118 118 118 CYS CYS A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 GLY 127 127 127 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-22 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 88 ? ? -62.94 -74.86 2 1 ASP A 103 ? ? 33.72 47.43 3 2 ASP A 40 ? ? 35.79 49.11 4 2 LYS A 90 ? ? -37.63 -31.29 5 2 THR A 96 ? ? -92.18 49.07 6 2 ASP A 103 ? ? 33.20 44.54 7 2 ASN A 121 ? ? -42.37 100.38 8 2 SER A 122 ? ? -160.49 109.33 9 2 PRO A 124 ? ? -69.77 1.82 10 3 SER A 3 ? ? 35.17 41.75 11 3 LYS A 39 ? ? -128.70 -74.90 12 3 LYS A 41 ? ? 38.93 26.63 13 3 ASP A 103 ? ? 34.00 50.91 14 3 GLU A 120 ? ? -60.48 78.41 15 3 PRO A 124 ? ? -69.79 98.72 16 3 SER A 126 ? ? -34.95 106.06 17 4 SER A 5 ? ? -105.01 42.94 18 4 MET A 88 ? ? -47.29 -71.88 19 4 ASP A 94 ? ? -108.84 48.27 20 4 GLU A 98 ? ? -34.74 -35.80 21 4 ASP A 103 ? ? 33.60 47.25 22 4 SER A 122 ? ? -94.07 -63.52 23 5 MET A 88 ? ? -61.34 -73.22 24 5 ASP A 103 ? ? 35.46 50.20 25 5 PHE A 116 ? ? -37.08 148.76 26 5 PRO A 124 ? ? -69.79 98.83 27 6 ASP A 40 ? ? 35.58 47.63 28 6 LYS A 90 ? ? -38.25 -27.83 29 6 ASP A 103 ? ? 33.52 46.88 30 6 ASN A 121 ? ? -36.96 124.66 31 6 PRO A 124 ? ? -69.73 89.31 32 6 SER A 126 ? ? -161.86 113.87 33 7 SER A 5 ? ? -69.36 88.90 34 7 LEU A 12 ? ? -47.30 157.78 35 7 LYS A 39 ? ? -82.43 -75.05 36 7 LYS A 41 ? ? 39.83 26.67 37 7 HIS A 46 ? ? 49.55 26.31 38 7 THR A 49 ? ? -47.88 168.21 39 7 MET A 88 ? ? -39.43 -72.65 40 7 GLU A 98 ? ? -35.01 -39.11 41 7 ASP A 103 ? ? 34.43 48.55 42 7 GLU A 120 ? ? -38.72 94.80 43 7 ASN A 121 ? ? -41.80 163.83 44 8 SER A 2 ? ? -173.89 143.40 45 8 ARG A 8 ? ? -173.77 132.85 46 8 SER A 9 ? ? -47.96 153.66 47 8 THR A 96 ? ? -86.64 40.13 48 8 ASP A 103 ? ? -76.33 43.78 49 9 SER A 6 ? ? -101.75 56.82 50 9 PRO A 13 ? ? -69.78 97.70 51 9 LEU A 76 ? ? -39.88 -35.55 52 9 MET A 88 ? ? -39.95 -70.05 53 9 ASP A 103 ? ? 33.74 36.92 54 9 SER A 114 ? ? -51.05 170.29 55 9 SER A 125 ? ? -36.90 130.72 56 10 SER A 2 ? ? -174.99 141.43 57 10 ASP A 27 ? ? -48.21 155.88 58 10 LYS A 90 ? ? -35.17 -31.65 59 10 GLU A 98 ? ? -36.79 -36.38 60 10 ASP A 103 ? ? -77.64 41.61 61 10 ASN A 121 ? ? -34.52 137.73 62 10 SER A 122 ? ? -44.54 164.01 63 10 PRO A 124 ? ? -69.80 1.46 64 10 SER A 125 ? ? -34.53 120.93 65 11 SER A 2 ? ? -175.01 124.72 66 11 ARG A 8 ? ? -120.82 -66.17 67 11 VAL A 53 ? ? -53.66 -74.56 68 11 ALA A 97 ? ? -173.26 108.17 69 11 ASP A 103 ? ? 33.30 51.39 70 12 ARG A 8 ? ? -169.98 119.17 71 12 SER A 9 ? ? -50.36 -178.81 72 12 THR A 49 ? ? -47.76 169.47 73 12 MET A 88 ? ? -45.50 -70.51 74 12 ASP A 94 ? ? -104.25 45.69 75 12 ASP A 103 ? ? -75.29 45.11 76 12 PRO A 124 ? ? -69.76 92.38 77 13 LYS A 90 ? ? -39.72 -33.54 78 13 ASP A 94 ? ? -36.29 -35.19 79 13 THR A 96 ? ? 38.40 44.05 80 13 ASP A 103 ? ? -77.19 42.00 81 13 PRO A 105 ? ? -69.74 0.70 82 13 SER A 114 ? ? -49.54 176.72 83 13 PHE A 117 ? ? -170.03 127.76 84 13 ASN A 121 ? ? -83.68 43.75 85 13 SER A 125 ? ? -38.40 96.05 86 14 LYS A 39 ? ? -124.43 -71.54 87 14 LYS A 41 ? ? 35.74 36.94 88 14 LYS A 90 ? ? -38.18 -32.00 89 14 ASP A 94 ? ? -103.66 46.03 90 14 THR A 96 ? ? -96.32 46.58 91 14 PRO A 100 ? ? -69.78 2.01 92 14 ASP A 103 ? ? -75.17 45.24 93 14 SER A 126 ? ? -39.35 104.25 94 15 SER A 3 ? ? -98.13 -65.25 95 15 SER A 6 ? ? -173.97 144.35 96 15 ARG A 8 ? ? -82.64 -73.13 97 15 HIS A 46 ? ? 36.72 39.30 98 15 ASP A 94 ? ? -105.19 42.34 99 15 ASP A 103 ? ? -80.76 35.96 100 15 GLU A 119 ? ? -118.68 79.28 101 15 GLU A 120 ? ? -41.10 92.46 102 15 SER A 122 ? ? -130.42 -60.62 103 15 PRO A 124 ? ? -69.74 -179.93 104 16 LYS A 41 ? ? 43.07 27.77 105 16 THR A 49 ? ? -66.87 -179.26 106 16 PRO A 100 ? ? -69.73 2.13 107 16 ASP A 103 ? ? -75.52 44.53 108 16 PRO A 124 ? ? -69.72 90.72 109 17 ASP A 27 ? ? -46.90 159.15 110 17 PHE A 44 ? ? -66.03 98.22 111 17 MET A 88 ? ? -50.93 -72.52 112 17 THR A 96 ? ? -67.06 73.26 113 17 ALA A 97 ? ? -173.69 112.81 114 18 ASP A 40 ? ? -40.04 100.78 115 18 LYS A 41 ? ? 38.07 34.00 116 18 MET A 88 ? ? -57.58 -71.81 117 18 THR A 96 ? ? 37.37 47.20 118 18 ASP A 103 ? ? -75.51 44.72 119 18 PHE A 117 ? ? -171.88 120.28 120 18 GLU A 120 ? ? -85.12 43.73 121 18 ASN A 121 ? ? -36.42 117.26 122 19 LYS A 41 ? ? 47.69 26.16 123 19 MET A 88 ? ? -35.32 -71.36 124 19 ASP A 103 ? ? -75.20 45.15 125 19 PRO A 105 ? ? -69.75 0.32 126 19 ALA A 107 ? ? -52.73 104.79 127 19 PRO A 124 ? ? -69.77 -176.46 128 20 ASP A 27 ? ? -46.06 153.80 129 20 GLU A 38 ? ? -109.06 78.82 130 20 LYS A 41 ? ? 41.81 27.47 131 20 ALA A 97 ? ? -34.96 122.98 132 20 ASP A 103 ? ? 32.55 47.21 133 20 GLU A 120 ? ? -44.60 106.60 #