data_2CV8 # _entry.id 2CV8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2CV8 RCSB RCSB024658 WWPDB D_1000024658 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id sto001000358.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CV8 _pdbx_database_status.recvd_initial_deposition_date 2005-06-01 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kato-Murayama, M.' 1 'Bessho, Y.' 2 'Shirouzu, M.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kato-Murayama, M.' 1 primary 'Bessho, Y.' 2 primary 'Shirouzu, M.' 3 primary 'Yokoyama, S.' 4 # _cell.entry_id 2CV8 _cell.length_a 54.308 _cell.length_b 54.308 _cell.length_c 242.768 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CV8 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'tRNA-splicing endonuclease' 20722.633 2 3.1.27.9 ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 water nat water 18.015 26 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'tRNA-intron endonuclease' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)IGELVKDKILIKNIEDARLIYK(MSE)GYYGKPIGISKPKSAEEINSELILSLIEGVYLVKKGKLEIVSNGERLD FERLYQIGVTQIPRFRILYSVYEDLREKGYVVRSGIKYGADFAVYTIGPGIEHAPYLVIALDENSQISSNEILGFGRVSH STRKELILGIVNLTNGKIRYI(MSE)FKWLK(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;MIGELVKDKILIKNIEDARLIYKMGYYGKPIGISKPKSAEEINSELILSLIEGVYLVKKGKLEIVSNGERLDFERLYQIG VTQIPRFRILYSVYEDLREKGYVVRSGIKYGADFAVYTIGPGIEHAPYLVIALDENSQISSNEILGFGRVSHSTRKELIL GIVNLTNGKIRYIMFKWLKM ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier sto001000358.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ILE n 1 3 GLY n 1 4 GLU n 1 5 LEU n 1 6 VAL n 1 7 LYS n 1 8 ASP n 1 9 LYS n 1 10 ILE n 1 11 LEU n 1 12 ILE n 1 13 LYS n 1 14 ASN n 1 15 ILE n 1 16 GLU n 1 17 ASP n 1 18 ALA n 1 19 ARG n 1 20 LEU n 1 21 ILE n 1 22 TYR n 1 23 LYS n 1 24 MSE n 1 25 GLY n 1 26 TYR n 1 27 TYR n 1 28 GLY n 1 29 LYS n 1 30 PRO n 1 31 ILE n 1 32 GLY n 1 33 ILE n 1 34 SER n 1 35 LYS n 1 36 PRO n 1 37 LYS n 1 38 SER n 1 39 ALA n 1 40 GLU n 1 41 GLU n 1 42 ILE n 1 43 ASN n 1 44 SER n 1 45 GLU n 1 46 LEU n 1 47 ILE n 1 48 LEU n 1 49 SER n 1 50 LEU n 1 51 ILE n 1 52 GLU n 1 53 GLY n 1 54 VAL n 1 55 TYR n 1 56 LEU n 1 57 VAL n 1 58 LYS n 1 59 LYS n 1 60 GLY n 1 61 LYS n 1 62 LEU n 1 63 GLU n 1 64 ILE n 1 65 VAL n 1 66 SER n 1 67 ASN n 1 68 GLY n 1 69 GLU n 1 70 ARG n 1 71 LEU n 1 72 ASP n 1 73 PHE n 1 74 GLU n 1 75 ARG n 1 76 LEU n 1 77 TYR n 1 78 GLN n 1 79 ILE n 1 80 GLY n 1 81 VAL n 1 82 THR n 1 83 GLN n 1 84 ILE n 1 85 PRO n 1 86 ARG n 1 87 PHE n 1 88 ARG n 1 89 ILE n 1 90 LEU n 1 91 TYR n 1 92 SER n 1 93 VAL n 1 94 TYR n 1 95 GLU n 1 96 ASP n 1 97 LEU n 1 98 ARG n 1 99 GLU n 1 100 LYS n 1 101 GLY n 1 102 TYR n 1 103 VAL n 1 104 VAL n 1 105 ARG n 1 106 SER n 1 107 GLY n 1 108 ILE n 1 109 LYS n 1 110 TYR n 1 111 GLY n 1 112 ALA n 1 113 ASP n 1 114 PHE n 1 115 ALA n 1 116 VAL n 1 117 TYR n 1 118 THR n 1 119 ILE n 1 120 GLY n 1 121 PRO n 1 122 GLY n 1 123 ILE n 1 124 GLU n 1 125 HIS n 1 126 ALA n 1 127 PRO n 1 128 TYR n 1 129 LEU n 1 130 VAL n 1 131 ILE n 1 132 ALA n 1 133 LEU n 1 134 ASP n 1 135 GLU n 1 136 ASN n 1 137 SER n 1 138 GLN n 1 139 ILE n 1 140 SER n 1 141 SER n 1 142 ASN n 1 143 GLU n 1 144 ILE n 1 145 LEU n 1 146 GLY n 1 147 PHE n 1 148 GLY n 1 149 ARG n 1 150 VAL n 1 151 SER n 1 152 HIS n 1 153 SER n 1 154 THR n 1 155 ARG n 1 156 LYS n 1 157 GLU n 1 158 LEU n 1 159 ILE n 1 160 LEU n 1 161 GLY n 1 162 ILE n 1 163 VAL n 1 164 ASN n 1 165 LEU n 1 166 THR n 1 167 ASN n 1 168 GLY n 1 169 LYS n 1 170 ILE n 1 171 ARG n 1 172 TYR n 1 173 ILE n 1 174 MSE n 1 175 PHE n 1 176 LYS n 1 177 TRP n 1 178 LEU n 1 179 LYS n 1 180 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus tokodaii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 111955 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ENDA_SULTO _struct_ref.pdbx_db_accession Q975R3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIGELVKDKILIKNIEDARLIYKMGYYGKPIGISKPKSAEEINSELILSLIEGVYLVKKGKLEIVSNGERLDFERLYQIG VTQIPRFRILYSVYEDLREKGYVVRSGIKYGADFAVYTIGPGIEHAPYLVIALDENSQISSNEILGFGRVSHSTRKELIL GIVNLTNGKIRYIMFKWLKM ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2CV8 A 1 ? 180 ? Q975R3 1 ? 180 ? 1 180 2 1 2CV8 B 1 ? 180 ? Q975R3 1 ? 180 ? 1 180 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CV8 MSE A 1 ? UNP Q975R3 MET 1 'MODIFIED RESIDUE' 1 1 1 2CV8 MSE A 24 ? UNP Q975R3 MET 24 'MODIFIED RESIDUE' 24 2 1 2CV8 MSE A 174 ? UNP Q975R3 MET 174 'MODIFIED RESIDUE' 174 3 1 2CV8 MSE A 180 ? UNP Q975R3 MET 180 'MODIFIED RESIDUE' 180 4 2 2CV8 MSE B 1 ? UNP Q975R3 MET 1 'MODIFIED RESIDUE' 1 5 2 2CV8 MSE B 24 ? UNP Q975R3 MET 24 'MODIFIED RESIDUE' 24 6 2 2CV8 MSE B 174 ? UNP Q975R3 MET 174 'MODIFIED RESIDUE' 174 7 2 2CV8 MSE B 180 ? UNP Q975R3 MET 180 'MODIFIED RESIDUE' 180 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2CV8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 43.2 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'PEG4000, iso-propanol, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'RIGAKU JUPITER 210' 2004-06-27 ? 2 CCD 'ADSC QUANTUM 315' 2004-12-09 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? MAD x-ray 2 2 M ? 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9792 1.0 2 0.9795 1.0 3 0.9690 1.0 4 1.00 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SPRING-8 BEAMLINE BL26B1' SPring-8 BL26B1 ? '0.9792, 0.9795, 0.9690' 2 SYNCHROTRON 'SPRING-8 BEAMLINE BL41XU' SPring-8 BL41XU ? 1.00 # _reflns.entry_id 2CV8 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 49.57 _reflns.d_resolution_high 2.80 _reflns.number_obs 9765 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 61.9 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2CV8 _refine.ls_number_reflns_obs 9700 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1571566.85 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.39 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.226 _refine.ls_R_factor_R_free 0.299 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1001 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 48.2 _refine.aniso_B[1][1] -9.54 _refine.aniso_B[2][2] -9.54 _refine.aniso_B[3][3] 19.09 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.355513 _refine.solvent_model_param_bsol 46.0358 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model GROUP _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2CV8 _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.36 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.50 _refine_analyze.Luzzati_sigma_a_free 0.59 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2740 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 26 _refine_hist.number_atoms_total 2768 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 49.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.83 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details CONSTR _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_number ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 1385 _refine_ls_shell.R_factor_R_work 0.3 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.402 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 11.2 _refine_ls_shell.number_reflns_R_free 174 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct_ncs_dom.id 1 _struct_ncs_dom.pdbx_ens_id 1 _struct_ncs_dom.details ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2CV8 _struct.title 'Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii' _struct.pdbx_descriptor 'tRNA-splicing endonuclease (E.C.3.1.27.9)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CV8 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;tRNA-intron endonuclease, tRNA splicing, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 14 ? TYR A 26 ? ASN A 14 TYR A 26 1 ? 13 HELX_P HELX_P2 2 LEU A 50 ? LYS A 59 ? LEU A 50 LYS A 59 1 ? 10 HELX_P HELX_P3 3 ASP A 72 ? ILE A 84 ? ASP A 72 ILE A 84 1 ? 13 HELX_P HELX_P4 4 ARG A 86 ? LYS A 100 ? ARG A 86 LYS A 100 1 ? 15 HELX_P HELX_P5 5 ILE A 108 ? GLY A 111 ? ILE A 108 GLY A 111 5 ? 4 HELX_P HELX_P6 6 SER A 141 ? LEU A 145 ? SER A 141 LEU A 145 1 ? 5 HELX_P HELX_P7 7 ASN B 14 ? TYR B 26 ? ASN B 14 TYR B 26 1 ? 13 HELX_P HELX_P8 8 SER B 38 ? ILE B 42 ? SER B 38 ILE B 42 5 ? 5 HELX_P HELX_P9 9 LEU B 50 ? LYS B 59 ? LEU B 50 LYS B 59 1 ? 10 HELX_P HELX_P10 10 ASP B 72 ? ILE B 84 ? ASP B 72 ILE B 84 1 ? 13 HELX_P HELX_P11 11 ARG B 86 ? LYS B 100 ? ARG B 86 LYS B 100 1 ? 15 HELX_P HELX_P12 12 ILE B 108 ? GLY B 111 ? ILE B 108 GLY B 111 5 ? 4 HELX_P HELX_P13 13 SER B 141 ? HIS B 152 ? SER B 141 HIS B 152 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A ILE 2 N ? ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A LYS 23 C ? ? ? 1_555 A MSE 24 N ? ? A LYS 23 A MSE 24 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A MSE 24 C ? ? ? 1_555 A GLY 25 N ? ? A MSE 24 A GLY 25 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A ILE 173 C ? ? ? 1_555 A MSE 174 N ? ? A ILE 173 A MSE 174 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A MSE 174 C ? ? ? 1_555 A PHE 175 N ? ? A MSE 174 A PHE 175 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A LYS 179 C ? ? ? 1_555 A MSE 180 N ? ? A LYS 179 A MSE 180 1_555 ? ? ? ? ? ? ? 1.330 ? covale7 covale ? ? B MSE 1 C ? ? ? 1_555 B ILE 2 N ? ? B MSE 1 B ILE 2 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? B LYS 23 C ? ? ? 1_555 B MSE 24 N ? ? B LYS 23 B MSE 24 1_555 ? ? ? ? ? ? ? 1.334 ? covale9 covale ? ? B MSE 24 C ? ? ? 1_555 B GLY 25 N ? ? B MSE 24 B GLY 25 1_555 ? ? ? ? ? ? ? 1.328 ? covale10 covale ? ? B ILE 173 C ? ? ? 1_555 B MSE 174 N ? ? B ILE 173 B MSE 174 1_555 ? ? ? ? ? ? ? 1.322 ? covale11 covale ? ? B MSE 174 C ? ? ? 1_555 B PHE 175 N ? ? B MSE 174 B PHE 175 1_555 ? ? ? ? ? ? ? 1.332 ? covale12 covale ? ? B LYS 179 C ? ? ? 1_555 B MSE 180 N ? ? B LYS 179 B MSE 180 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 10 ? C ? 2 ? D ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? parallel D 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 29 ? PRO A 30 ? LYS A 29 PRO A 30 A 2 LEU A 46 ? SER A 49 ? LEU A 46 SER A 49 A 3 LYS A 9 ? ILE A 12 ? LYS A 9 ILE A 12 A 4 ILE A 2 ? VAL A 6 ? ILE A 2 VAL A 6 A 5 GLU A 63 ? SER A 66 ? GLU A 63 SER A 66 A 6 GLU A 69 ? LEU A 71 ? GLU A 69 LEU A 71 B 1 VAL A 103 ? SER A 106 ? VAL A 103 SER A 106 B 2 PHE A 114 ? TYR A 117 ? PHE A 114 TYR A 117 B 3 TYR A 128 ? ASP A 134 ? TYR A 128 ASP A 134 B 4 GLU A 157 ? VAL A 163 ? GLU A 157 VAL A 163 B 5 ILE A 170 ? LEU A 178 ? ILE A 170 LEU A 178 B 6 ILE B 170 ? LEU B 178 ? ILE B 170 LEU B 178 B 7 GLU B 157 ? VAL B 163 ? GLU B 157 VAL B 163 B 8 TYR B 128 ? ASP B 134 ? TYR B 128 ASP B 134 B 9 PHE B 114 ? TYR B 117 ? PHE B 114 TYR B 117 B 10 VAL B 103 ? SER B 106 ? VAL B 103 SER B 106 C 1 GLN A 138 ? SER A 140 ? GLN A 138 SER A 140 C 2 GLN B 138 ? SER B 140 ? GLN B 138 SER B 140 D 1 LYS B 29 ? PRO B 30 ? LYS B 29 PRO B 30 D 2 LEU B 46 ? SER B 49 ? LEU B 46 SER B 49 D 3 LYS B 9 ? ILE B 12 ? LYS B 9 ILE B 12 D 4 ILE B 2 ? VAL B 6 ? ILE B 2 VAL B 6 D 5 GLU B 63 ? SER B 66 ? GLU B 63 SER B 66 D 6 GLU B 69 ? LEU B 71 ? GLU B 69 LEU B 71 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 29 ? N LYS A 29 O ILE A 47 ? O ILE A 47 A 2 3 O LEU A 48 ? O LEU A 48 N ILE A 10 ? N ILE A 10 A 3 4 O LEU A 11 ? O LEU A 11 N GLU A 4 ? N GLU A 4 A 4 5 N GLY A 3 ? N GLY A 3 O VAL A 65 ? O VAL A 65 A 5 6 N SER A 66 ? N SER A 66 O GLU A 69 ? O GLU A 69 B 1 2 N VAL A 103 ? N VAL A 103 O TYR A 117 ? O TYR A 117 B 2 3 N VAL A 116 ? N VAL A 116 O TYR A 128 ? O TYR A 128 B 3 4 N LEU A 133 ? N LEU A 133 O GLY A 161 ? O GLY A 161 B 4 5 N LEU A 160 ? N LEU A 160 O ILE A 173 ? O ILE A 173 B 5 6 N LEU A 178 ? N LEU A 178 O TYR B 172 ? O TYR B 172 B 6 7 O ILE B 173 ? O ILE B 173 N LEU B 160 ? N LEU B 160 B 7 8 O GLY B 161 ? O GLY B 161 N LEU B 133 ? N LEU B 133 B 8 9 O TYR B 128 ? O TYR B 128 N VAL B 116 ? N VAL B 116 B 9 10 O TYR B 117 ? O TYR B 117 N VAL B 103 ? N VAL B 103 C 1 2 N ILE A 139 ? N ILE A 139 O ILE B 139 ? O ILE B 139 D 1 2 N LYS B 29 ? N LYS B 29 O ILE B 47 ? O ILE B 47 D 2 3 O LEU B 48 ? O LEU B 48 N ILE B 10 ? N ILE B 10 D 3 4 O LYS B 9 ? O LYS B 9 N VAL B 6 ? N VAL B 6 D 4 5 N GLY B 3 ? N GLY B 3 O VAL B 65 ? O VAL B 65 D 5 6 N SER B 66 ? N SER B 66 O GLU B 69 ? O GLU B 69 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE CL B 1001' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id SER _struct_site_gen.label_asym_id B _struct_site_gen.label_seq_id 49 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id SER _struct_site_gen.auth_asym_id B _struct_site_gen.auth_seq_id 49 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 2CV8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CV8 _atom_sites.fract_transf_matrix[1][1] 0.018413 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018413 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004119 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 MSE 24 24 24 MSE MSE A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ILE 33 33 ? ? ? A . n A 1 34 SER 34 34 ? ? ? A . n A 1 35 LYS 35 35 ? ? ? A . n A 1 36 PRO 36 36 ? ? ? A . n A 1 37 LYS 37 37 ? ? ? A . n A 1 38 SER 38 38 ? ? ? A . n A 1 39 ALA 39 39 ? ? ? A . n A 1 40 GLU 40 40 ? ? ? A . n A 1 41 GLU 41 41 ? ? ? A . n A 1 42 ILE 42 42 ? ? ? A . n A 1 43 ASN 43 43 ? ? ? A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 GLY 122 122 ? ? ? A . n A 1 123 ILE 123 123 ? ? ? A . n A 1 124 GLU 124 124 ? ? ? A . n A 1 125 HIS 125 125 ? ? ? A . n A 1 126 ALA 126 126 ? ? ? A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 TYR 128 128 128 TYR TYR A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 GLN 138 138 138 GLN GLN A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 PHE 147 147 147 PHE PHE A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 HIS 152 152 ? ? ? A . n A 1 153 SER 153 153 ? ? ? A . n A 1 154 THR 154 154 ? ? ? A . n A 1 155 ARG 155 155 ? ? ? A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 ILE 159 159 159 ILE ILE A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 THR 166 166 166 THR THR A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 TYR 172 172 172 TYR TYR A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 MSE 174 174 174 MSE MSE A . n A 1 175 PHE 175 175 175 PHE PHE A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 TRP 177 177 177 TRP TRP A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 LYS 179 179 179 LYS LYS A . n A 1 180 MSE 180 180 180 MSE MSE A . n B 1 1 MSE 1 1 1 MSE MSE B . n B 1 2 ILE 2 2 2 ILE ILE B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 GLU 4 4 4 GLU GLU B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 ASP 8 8 8 ASP ASP B . n B 1 9 LYS 9 9 9 LYS LYS B . n B 1 10 ILE 10 10 10 ILE ILE B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 LYS 13 13 13 LYS LYS B . n B 1 14 ASN 14 14 14 ASN ASN B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 ALA 18 18 18 ALA ALA B . n B 1 19 ARG 19 19 19 ARG ARG B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 ILE 21 21 21 ILE ILE B . n B 1 22 TYR 22 22 22 TYR TYR B . n B 1 23 LYS 23 23 23 LYS LYS B . n B 1 24 MSE 24 24 24 MSE MSE B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 TYR 26 26 26 TYR TYR B . n B 1 27 TYR 27 27 27 TYR TYR B . n B 1 28 GLY 28 28 28 GLY GLY B . n B 1 29 LYS 29 29 29 LYS LYS B . n B 1 30 PRO 30 30 30 PRO PRO B . n B 1 31 ILE 31 31 31 ILE ILE B . n B 1 32 GLY 32 32 32 GLY GLY B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 SER 34 34 34 SER SER B . n B 1 35 LYS 35 35 35 LYS LYS B . n B 1 36 PRO 36 36 36 PRO PRO B . n B 1 37 LYS 37 37 37 LYS LYS B . n B 1 38 SER 38 38 38 SER SER B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 GLU 40 40 40 GLU GLU B . n B 1 41 GLU 41 41 41 GLU GLU B . n B 1 42 ILE 42 42 42 ILE ILE B . n B 1 43 ASN 43 43 43 ASN ASN B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 LEU 48 48 48 LEU LEU B . n B 1 49 SER 49 49 49 SER SER B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 ILE 51 51 51 ILE ILE B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 GLY 53 53 53 GLY GLY B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 TYR 55 55 55 TYR TYR B . n B 1 56 LEU 56 56 56 LEU LEU B . n B 1 57 VAL 57 57 57 VAL VAL B . n B 1 58 LYS 58 58 58 LYS LYS B . n B 1 59 LYS 59 59 59 LYS LYS B . n B 1 60 GLY 60 60 60 GLY GLY B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 GLU 63 63 63 GLU GLU B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 VAL 65 65 65 VAL VAL B . n B 1 66 SER 66 66 66 SER SER B . n B 1 67 ASN 67 67 67 ASN ASN B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 GLU 69 69 69 GLU GLU B . n B 1 70 ARG 70 70 70 ARG ARG B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 ASP 72 72 72 ASP ASP B . n B 1 73 PHE 73 73 73 PHE PHE B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 ARG 75 75 75 ARG ARG B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 TYR 77 77 77 TYR TYR B . n B 1 78 GLN 78 78 78 GLN GLN B . n B 1 79 ILE 79 79 79 ILE ILE B . n B 1 80 GLY 80 80 80 GLY GLY B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 THR 82 82 82 THR THR B . n B 1 83 GLN 83 83 83 GLN GLN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 PRO 85 85 85 PRO PRO B . n B 1 86 ARG 86 86 86 ARG ARG B . n B 1 87 PHE 87 87 87 PHE PHE B . n B 1 88 ARG 88 88 88 ARG ARG B . n B 1 89 ILE 89 89 89 ILE ILE B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 TYR 91 91 91 TYR TYR B . n B 1 92 SER 92 92 92 SER SER B . n B 1 93 VAL 93 93 93 VAL VAL B . n B 1 94 TYR 94 94 94 TYR TYR B . n B 1 95 GLU 95 95 95 GLU GLU B . n B 1 96 ASP 96 96 96 ASP ASP B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ARG 98 98 98 ARG ARG B . n B 1 99 GLU 99 99 99 GLU GLU B . n B 1 100 LYS 100 100 100 LYS LYS B . n B 1 101 GLY 101 101 101 GLY GLY B . n B 1 102 TYR 102 102 102 TYR TYR B . n B 1 103 VAL 103 103 103 VAL VAL B . n B 1 104 VAL 104 104 104 VAL VAL B . n B 1 105 ARG 105 105 105 ARG ARG B . n B 1 106 SER 106 106 106 SER SER B . n B 1 107 GLY 107 107 107 GLY GLY B . n B 1 108 ILE 108 108 108 ILE ILE B . n B 1 109 LYS 109 109 109 LYS LYS B . n B 1 110 TYR 110 110 110 TYR TYR B . n B 1 111 GLY 111 111 111 GLY GLY B . n B 1 112 ALA 112 112 112 ALA ALA B . n B 1 113 ASP 113 113 113 ASP ASP B . n B 1 114 PHE 114 114 114 PHE PHE B . n B 1 115 ALA 115 115 115 ALA ALA B . n B 1 116 VAL 116 116 116 VAL VAL B . n B 1 117 TYR 117 117 117 TYR TYR B . n B 1 118 THR 118 118 118 THR THR B . n B 1 119 ILE 119 119 119 ILE ILE B . n B 1 120 GLY 120 120 120 GLY GLY B . n B 1 121 PRO 121 121 121 PRO PRO B . n B 1 122 GLY 122 122 122 GLY GLY B . n B 1 123 ILE 123 123 123 ILE ILE B . n B 1 124 GLU 124 124 124 GLU GLU B . n B 1 125 HIS 125 125 125 HIS HIS B . n B 1 126 ALA 126 126 126 ALA ALA B . n B 1 127 PRO 127 127 127 PRO PRO B . n B 1 128 TYR 128 128 128 TYR TYR B . n B 1 129 LEU 129 129 129 LEU LEU B . n B 1 130 VAL 130 130 130 VAL VAL B . n B 1 131 ILE 131 131 131 ILE ILE B . n B 1 132 ALA 132 132 132 ALA ALA B . n B 1 133 LEU 133 133 133 LEU LEU B . n B 1 134 ASP 134 134 134 ASP ASP B . n B 1 135 GLU 135 135 135 GLU GLU B . n B 1 136 ASN 136 136 136 ASN ASN B . n B 1 137 SER 137 137 137 SER SER B . n B 1 138 GLN 138 138 138 GLN GLN B . n B 1 139 ILE 139 139 139 ILE ILE B . n B 1 140 SER 140 140 140 SER SER B . n B 1 141 SER 141 141 141 SER SER B . n B 1 142 ASN 142 142 142 ASN ASN B . n B 1 143 GLU 143 143 143 GLU GLU B . n B 1 144 ILE 144 144 144 ILE ILE B . n B 1 145 LEU 145 145 145 LEU LEU B . n B 1 146 GLY 146 146 146 GLY GLY B . n B 1 147 PHE 147 147 147 PHE PHE B . n B 1 148 GLY 148 148 148 GLY GLY B . n B 1 149 ARG 149 149 149 ARG ARG B . n B 1 150 VAL 150 150 150 VAL VAL B . n B 1 151 SER 151 151 151 SER SER B . n B 1 152 HIS 152 152 152 HIS HIS B . n B 1 153 SER 153 153 153 SER SER B . n B 1 154 THR 154 154 154 THR THR B . n B 1 155 ARG 155 155 155 ARG ARG B . n B 1 156 LYS 156 156 156 LYS LYS B . n B 1 157 GLU 157 157 157 GLU GLU B . n B 1 158 LEU 158 158 158 LEU LEU B . n B 1 159 ILE 159 159 159 ILE ILE B . n B 1 160 LEU 160 160 160 LEU LEU B . n B 1 161 GLY 161 161 161 GLY GLY B . n B 1 162 ILE 162 162 162 ILE ILE B . n B 1 163 VAL 163 163 163 VAL VAL B . n B 1 164 ASN 164 164 164 ASN ASN B . n B 1 165 LEU 165 165 165 LEU LEU B . n B 1 166 THR 166 166 166 THR THR B . n B 1 167 ASN 167 167 167 ASN ASN B . n B 1 168 GLY 168 168 168 GLY GLY B . n B 1 169 LYS 169 169 169 LYS LYS B . n B 1 170 ILE 170 170 170 ILE ILE B . n B 1 171 ARG 171 171 171 ARG ARG B . n B 1 172 TYR 172 172 172 TYR TYR B . n B 1 173 ILE 173 173 173 ILE ILE B . n B 1 174 MSE 174 174 174 MSE MSE B . n B 1 175 PHE 175 175 175 PHE PHE B . n B 1 176 LYS 176 176 176 LYS LYS B . n B 1 177 TRP 177 177 177 TRP TRP B . n B 1 178 LEU 178 178 178 LEU LEU B . n B 1 179 LYS 179 179 179 LYS LYS B . n B 1 180 MSE 180 180 180 MSE MSE B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 1002 2 CL CL1 A . D 2 CL 1 1001 1 CL CL1 B . E 3 HOH 1 1003 3 HOH TIP A . E 3 HOH 2 1004 7 HOH TIP A . E 3 HOH 3 1005 8 HOH TIP A . E 3 HOH 4 1006 10 HOH TIP A . E 3 HOH 5 1007 11 HOH TIP A . E 3 HOH 6 1008 13 HOH TIP A . E 3 HOH 7 1009 14 HOH TIP A . E 3 HOH 8 1010 16 HOH TIP A . E 3 HOH 9 1011 17 HOH TIP A . E 3 HOH 10 1012 18 HOH TIP A . E 3 HOH 11 1013 19 HOH TIP A . E 3 HOH 12 1014 20 HOH TIP A . E 3 HOH 13 1015 21 HOH TIP A . E 3 HOH 14 1016 25 HOH TIP A . E 3 HOH 15 1017 26 HOH TIP A . F 3 HOH 1 1002 1 HOH TIP B . F 3 HOH 2 1003 2 HOH TIP B . F 3 HOH 3 1004 4 HOH TIP B . F 3 HOH 4 1005 5 HOH TIP B . F 3 HOH 5 1006 6 HOH TIP B . F 3 HOH 6 1007 9 HOH TIP B . F 3 HOH 7 1008 12 HOH TIP B . F 3 HOH 8 1009 15 HOH TIP B . F 3 HOH 9 1010 22 HOH TIP B . F 3 HOH 10 1011 23 HOH TIP B . F 3 HOH 11 1012 24 HOH TIP B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 24 A MSE 24 ? MET SELENOMETHIONINE 3 A MSE 174 A MSE 174 ? MET SELENOMETHIONINE 4 A MSE 180 A MSE 180 ? MET SELENOMETHIONINE 5 B MSE 1 B MSE 1 ? MET SELENOMETHIONINE 6 B MSE 24 B MSE 24 ? MET SELENOMETHIONINE 7 B MSE 174 B MSE 174 ? MET SELENOMETHIONINE 8 B MSE 180 B MSE 180 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3030 ? 1 MORE -41 ? 1 'SSA (A^2)' 17450 ? 2 'ABSA (A^2)' 7320 ? 2 MORE -95 ? 2 'SSA (A^2)' 33640 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_466 y-1,x+1,-z+1 0.0000000000 1.0000000000 0.0000000000 -54.3080000000 1.0000000000 0.0000000000 0.0000000000 54.3080000000 0.0000000000 0.0000000000 -1.0000000000 242.7680000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 148 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 148 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLY _pdbx_validate_rmsd_angle.auth_seq_id_3 148 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 97.61 _pdbx_validate_rmsd_angle.angle_target_value 113.10 _pdbx_validate_rmsd_angle.angle_deviation -15.49 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 7 ? ? 80.33 -113.42 2 1 ASN A 67 ? ? 47.33 72.28 3 1 ILE A 144 ? ? -61.10 -90.47 4 1 ARG A 149 ? ? -162.43 -3.12 5 1 LYS B 7 ? ? 79.75 -113.12 6 1 ASN B 67 ? ? 46.76 72.69 7 1 PRO B 121 ? ? -56.08 103.50 8 1 SER B 151 ? ? -60.70 -74.24 9 1 HIS B 152 ? ? -76.23 34.13 10 1 ARG B 155 ? ? 31.67 55.95 11 1 LYS B 156 ? ? -113.99 -167.09 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 33 ? A ILE 33 2 1 Y 1 A SER 34 ? A SER 34 3 1 Y 1 A LYS 35 ? A LYS 35 4 1 Y 1 A PRO 36 ? A PRO 36 5 1 Y 1 A LYS 37 ? A LYS 37 6 1 Y 1 A SER 38 ? A SER 38 7 1 Y 1 A ALA 39 ? A ALA 39 8 1 Y 1 A GLU 40 ? A GLU 40 9 1 Y 1 A GLU 41 ? A GLU 41 10 1 Y 1 A ILE 42 ? A ILE 42 11 1 Y 1 A ASN 43 ? A ASN 43 12 1 Y 1 A GLY 122 ? A GLY 122 13 1 Y 1 A ILE 123 ? A ILE 123 14 1 Y 1 A GLU 124 ? A GLU 124 15 1 Y 1 A HIS 125 ? A HIS 125 16 1 Y 1 A ALA 126 ? A ALA 126 17 1 Y 1 A HIS 152 ? A HIS 152 18 1 Y 1 A SER 153 ? A SER 153 19 1 Y 1 A THR 154 ? A THR 154 20 1 Y 1 A ARG 155 ? A ARG 155 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #