data_2CY5 # _entry.id 2CY5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2CY5 RCSB RCSB024758 WWPDB D_1000024758 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2CY4 . unspecified TargetDB mmt007011014.1 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CY5 _pdbx_database_status.recvd_initial_deposition_date 2005-07-04 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mizohata, E.' 1 'Hamana, H.' 2 'Morita, S.' 3 'Kinoshita, Y.' 4 'Nagano, K.' 5 'Uda, H.' 6 'Terada, T.' 7 'Shirouzu, M.' 8 'Yokoyama, S.' 9 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 10 # _citation.id primary _citation.title ;Crystal structure of phosphotyrosine binding (PTB) domain of epidermal growth factor receptor pathway substrate-8 (EPS8) related protein 1 from Mus musculus (form-2 crystal) ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mizohata, E.' 1 primary 'Hamana, H.' 2 primary 'Morita, S.' 3 primary 'Kinoshita, Y.' 4 primary 'Nagano, K.' 5 primary 'Uda, H.' 6 primary 'Terada, T.' 7 primary 'Shirouzu, M.' 8 primary 'Yokoyama, S.' 9 # _cell.entry_id 2CY5 _cell.length_a 73.385 _cell.length_b 73.385 _cell.length_c 59.889 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2CY5 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'epidermal growth factor receptor pathway substrate 8-like protein 1' 15881.384 1 ? ? 'phosphotyrosine binding (PTB) domain' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 water nat water 18.015 94 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'EPS8 related protein 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;STVV(MSE)ADVSQYHVNHLVTFCLGEEDGVHTVEDASRKLAV(MSE)DSQGRVWAQE(MSE)LLRVSPSQVTLLDPVSK EELESYPLDAIVRCDAV(MSE)PRGRSRSLLLLVCQEPERAQPDVHFFQGLLLGAELIREDIQGALQNYRSGRGER ; _entity_poly.pdbx_seq_one_letter_code_can ;STVVMADVSQYHVNHLVTFCLGEEDGVHTVEDASRKLAVMDSQGRVWAQEMLLRVSPSQVTLLDPVSKEELESYPLDAIV RCDAVMPRGRSRSLLLLVCQEPERAQPDVHFFQGLLLGAELIREDIQGALQNYRSGRGER ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt007011014.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 THR n 1 3 VAL n 1 4 VAL n 1 5 MSE n 1 6 ALA n 1 7 ASP n 1 8 VAL n 1 9 SER n 1 10 GLN n 1 11 TYR n 1 12 HIS n 1 13 VAL n 1 14 ASN n 1 15 HIS n 1 16 LEU n 1 17 VAL n 1 18 THR n 1 19 PHE n 1 20 CYS n 1 21 LEU n 1 22 GLY n 1 23 GLU n 1 24 GLU n 1 25 ASP n 1 26 GLY n 1 27 VAL n 1 28 HIS n 1 29 THR n 1 30 VAL n 1 31 GLU n 1 32 ASP n 1 33 ALA n 1 34 SER n 1 35 ARG n 1 36 LYS n 1 37 LEU n 1 38 ALA n 1 39 VAL n 1 40 MSE n 1 41 ASP n 1 42 SER n 1 43 GLN n 1 44 GLY n 1 45 ARG n 1 46 VAL n 1 47 TRP n 1 48 ALA n 1 49 GLN n 1 50 GLU n 1 51 MSE n 1 52 LEU n 1 53 LEU n 1 54 ARG n 1 55 VAL n 1 56 SER n 1 57 PRO n 1 58 SER n 1 59 GLN n 1 60 VAL n 1 61 THR n 1 62 LEU n 1 63 LEU n 1 64 ASP n 1 65 PRO n 1 66 VAL n 1 67 SER n 1 68 LYS n 1 69 GLU n 1 70 GLU n 1 71 LEU n 1 72 GLU n 1 73 SER n 1 74 TYR n 1 75 PRO n 1 76 LEU n 1 77 ASP n 1 78 ALA n 1 79 ILE n 1 80 VAL n 1 81 ARG n 1 82 CYS n 1 83 ASP n 1 84 ALA n 1 85 VAL n 1 86 MSE n 1 87 PRO n 1 88 ARG n 1 89 GLY n 1 90 ARG n 1 91 SER n 1 92 ARG n 1 93 SER n 1 94 LEU n 1 95 LEU n 1 96 LEU n 1 97 LEU n 1 98 VAL n 1 99 CYS n 1 100 GLN n 1 101 GLU n 1 102 PRO n 1 103 GLU n 1 104 ARG n 1 105 ALA n 1 106 GLN n 1 107 PRO n 1 108 ASP n 1 109 VAL n 1 110 HIS n 1 111 PHE n 1 112 PHE n 1 113 GLN n 1 114 GLY n 1 115 LEU n 1 116 LEU n 1 117 LEU n 1 118 GLY n 1 119 ALA n 1 120 GLU n 1 121 LEU n 1 122 ILE n 1 123 ARG n 1 124 GLU n 1 125 ASP n 1 126 ILE n 1 127 GLN n 1 128 GLY n 1 129 ALA n 1 130 LEU n 1 131 GLN n 1 132 ASN n 1 133 TYR n 1 134 ARG n 1 135 SER n 1 136 GLY n 1 137 ARG n 1 138 GLY n 1 139 GLU n 1 140 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PK030114-32 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free synthesis using S30 extract from E. coli' # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NP_080422 _struct_ref.pdbx_db_accession 18874094 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STVVMADVSQYHVNHLVTFCLGEEDGVHTVEDASRKLAVMDSQGRVWAQEMLLRVSPSQVTLLDPVSKEELESYPLDAIV RCDAVMPRGRSRSLLLLVCQEPERAQPDVHFFQGLLLGAELIREDIQGALQNYRSGRGER ; _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CY5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 140 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 18874094 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 165 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 165 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CY5 MSE A 5 ? GB 18874094 MET 30 'MODIFIED RESIDUE' 30 1 1 2CY5 MSE A 40 ? GB 18874094 MET 65 'MODIFIED RESIDUE' 65 2 1 2CY5 MSE A 51 ? GB 18874094 MET 76 'MODIFIED RESIDUE' 76 3 1 2CY5 MSE A 86 ? GB 18874094 MET 111 'MODIFIED RESIDUE' 111 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2CY5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.97 _exptl_crystal.density_percent_sol 57.8 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'PEG400, HEPES, Tris, calcium chloride, sodium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2004-11-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00000 # _reflns.entry_id 2CY5 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.9 _reflns.number_obs 14823 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 27.5 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2CY5 _refine.ls_number_reflns_obs 14817 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1538987.58 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.97 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.234 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 737 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 50.8 _refine.aniso_B[1][1] 0.91 _refine.aniso_B[2][2] 0.91 _refine.aniso_B[3][3] -1.82 _refine.aniso_B[1][2] 2.10 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.404066 _refine.solvent_model_param_bsol 71.2109 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2CY5 _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.16 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1025 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 1120 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 19.97 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.036 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.9 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 2.00 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 2292 _refine_ls_shell.R_factor_R_work 0.242 _refine_ls_shell.percent_reflns_obs 98.2 _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.R_factor_R_free_error 0.026 _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 122 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2CY5 _struct.title ;Crystal structure of phosphotyrosine binding (PTB) domain of epidermal growth factor receptor pathway substrate-8 (EPS8) related protein 1 from Mus musculus (form-2 crystal) ; _struct.pdbx_descriptor 'epidermal growth factor receptor pathway substrate 8-like protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CY5 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 29 ? GLN A 43 ? THR A 54 GLN A 68 1 ? 15 HELX_P HELX_P2 2 LEU A 117 ? ARG A 134 ? LEU A 142 ARG A 159 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 5 C ? ? ? 1_555 A ALA 6 N ? ? A MSE 30 A ALA 31 1_555 ? ? ? ? ? ? ? 1.356 ? covale2 covale ? ? A VAL 39 C ? ? ? 1_555 A MSE 40 N ? ? A VAL 64 A MSE 65 1_555 ? ? ? ? ? ? ? 1.350 ? covale3 covale ? ? A MSE 40 C ? ? ? 1_555 A ASP 41 N ? ? A MSE 65 A ASP 66 1_555 ? ? ? ? ? ? ? 1.309 ? covale4 covale ? ? A GLU 50 C ? ? ? 1_555 A MSE 51 N ? ? A GLU 75 A MSE 76 1_555 ? ? ? ? ? ? ? 1.337 ? covale5 covale ? ? A MSE 51 C ? ? ? 1_555 A LEU 52 N ? ? A MSE 76 A LEU 77 1_555 ? ? ? ? ? ? ? 1.288 ? covale6 covale ? ? A VAL 85 C ? ? ? 1_555 A MSE 86 N ? ? A VAL 110 A MSE 111 1_555 ? ? ? ? ? ? ? 1.354 ? covale7 covale ? ? A MSE 86 C ? ? ? 1_555 A PRO 87 N ? ? A MSE 111 A PRO 112 1_555 ? ? ? ? ? ? ? 1.315 ? metalc1 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 1500 A HOH 2 1_555 ? ? ? ? ? ? ? 2.281 ? metalc2 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 1500 A HOH 216 1_555 ? ? ? ? ? ? ? 2.347 ? metalc3 metalc ? ? B CA . CA ? ? ? 1_555 A ALA 6 O ? ? A CA 1500 A ALA 31 1_555 ? ? ? ? ? ? ? 2.394 ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 1500 A HOH 3 1_555 ? ? ? ? ? ? ? 2.392 ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 1500 A HOH 200 1_555 ? ? ? ? ? ? ? 2.432 ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 1500 A HOH 201 1_555 ? ? ? ? ? ? ? 2.425 ? metalc7 metalc ? ? B CA . CA ? ? ? 1_555 A ASP 125 OD1 ? ? A CA 1500 A ASP 150 1_555 ? ? ? ? ? ? ? 2.375 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 70 ? PRO A 75 ? GLU A 95 PRO A 100 A 2 GLN A 59 ? LEU A 63 ? GLN A 84 LEU A 88 A 3 GLN A 49 ? VAL A 55 ? GLN A 74 VAL A 80 A 4 SER A 9 ? CYS A 20 ? SER A 34 CYS A 45 A 5 ASP A 108 ? GLY A 114 ? ASP A 133 GLY A 139 A 6 LEU A 94 ? CYS A 99 ? LEU A 119 CYS A 124 A 7 ILE A 79 ? VAL A 85 ? ILE A 104 VAL A 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 71 ? O LEU A 96 N LEU A 62 ? N LEU A 87 A 2 3 O THR A 61 ? O THR A 86 N ARG A 54 ? N ARG A 79 A 3 4 O LEU A 53 ? O LEU A 78 N TYR A 11 ? N TYR A 36 A 4 5 N LEU A 16 ? N LEU A 41 O PHE A 111 ? O PHE A 136 A 5 6 O HIS A 110 ? O HIS A 135 N LEU A 97 ? N LEU A 122 A 6 7 O LEU A 94 ? O LEU A 119 N VAL A 85 ? N VAL A 110 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE CA A 1500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH C . ? HOH A 2 . ? 1_555 ? 2 AC1 7 HOH C . ? HOH A 3 . ? 1_555 ? 3 AC1 7 ALA A 6 ? ALA A 31 . ? 1_555 ? 4 AC1 7 ASP A 125 ? ASP A 150 . ? 1_555 ? 5 AC1 7 HOH C . ? HOH A 200 . ? 1_555 ? 6 AC1 7 HOH C . ? HOH A 201 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 216 . ? 1_555 ? # _database_PDB_matrix.entry_id 2CY5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CY5 _atom_sites.fract_transf_matrix[1][1] 0.013627 _atom_sites.fract_transf_matrix[1][2] 0.007867 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015735 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016698 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 26 ? ? ? A . n A 1 2 THR 2 27 ? ? ? A . n A 1 3 VAL 3 28 ? ? ? A . n A 1 4 VAL 4 29 ? ? ? A . n A 1 5 MSE 5 30 30 MSE MSE A . n A 1 6 ALA 6 31 31 ALA ALA A . n A 1 7 ASP 7 32 32 ASP ASP A . n A 1 8 VAL 8 33 33 VAL VAL A . n A 1 9 SER 9 34 34 SER SER A . n A 1 10 GLN 10 35 35 GLN GLN A . n A 1 11 TYR 11 36 36 TYR TYR A . n A 1 12 HIS 12 37 37 HIS HIS A . n A 1 13 VAL 13 38 38 VAL VAL A . n A 1 14 ASN 14 39 39 ASN ASN A . n A 1 15 HIS 15 40 40 HIS HIS A . n A 1 16 LEU 16 41 41 LEU LEU A . n A 1 17 VAL 17 42 42 VAL VAL A . n A 1 18 THR 18 43 43 THR THR A . n A 1 19 PHE 19 44 44 PHE PHE A . n A 1 20 CYS 20 45 45 CYS CYS A . n A 1 21 LEU 21 46 46 LEU LEU A . n A 1 22 GLY 22 47 47 GLY GLY A . n A 1 23 GLU 23 48 48 GLU GLU A . n A 1 24 GLU 24 49 49 GLU GLU A . n A 1 25 ASP 25 50 50 ASP ASP A . n A 1 26 GLY 26 51 51 GLY GLY A . n A 1 27 VAL 27 52 52 VAL VAL A . n A 1 28 HIS 28 53 53 HIS HIS A . n A 1 29 THR 29 54 54 THR THR A . n A 1 30 VAL 30 55 55 VAL VAL A . n A 1 31 GLU 31 56 56 GLU GLU A . n A 1 32 ASP 32 57 57 ASP ASP A . n A 1 33 ALA 33 58 58 ALA ALA A . n A 1 34 SER 34 59 59 SER SER A . n A 1 35 ARG 35 60 60 ARG ARG A . n A 1 36 LYS 36 61 61 LYS LYS A . n A 1 37 LEU 37 62 62 LEU LEU A . n A 1 38 ALA 38 63 63 ALA ALA A . n A 1 39 VAL 39 64 64 VAL VAL A . n A 1 40 MSE 40 65 65 MSE MSE A . n A 1 41 ASP 41 66 66 ASP ASP A . n A 1 42 SER 42 67 67 SER SER A . n A 1 43 GLN 43 68 68 GLN GLN A . n A 1 44 GLY 44 69 69 GLY GLY A . n A 1 45 ARG 45 70 70 ARG ARG A . n A 1 46 VAL 46 71 71 VAL VAL A . n A 1 47 TRP 47 72 72 TRP TRP A . n A 1 48 ALA 48 73 73 ALA ALA A . n A 1 49 GLN 49 74 74 GLN GLN A . n A 1 50 GLU 50 75 75 GLU GLU A . n A 1 51 MSE 51 76 76 MSE MSE A . n A 1 52 LEU 52 77 77 LEU LEU A . n A 1 53 LEU 53 78 78 LEU LEU A . n A 1 54 ARG 54 79 79 ARG ARG A . n A 1 55 VAL 55 80 80 VAL VAL A . n A 1 56 SER 56 81 81 SER SER A . n A 1 57 PRO 57 82 82 PRO PRO A . n A 1 58 SER 58 83 83 SER SER A . n A 1 59 GLN 59 84 84 GLN GLN A . n A 1 60 VAL 60 85 85 VAL VAL A . n A 1 61 THR 61 86 86 THR THR A . n A 1 62 LEU 62 87 87 LEU LEU A . n A 1 63 LEU 63 88 88 LEU LEU A . n A 1 64 ASP 64 89 89 ASP ASP A . n A 1 65 PRO 65 90 90 PRO PRO A . n A 1 66 VAL 66 91 91 VAL VAL A . n A 1 67 SER 67 92 92 SER SER A . n A 1 68 LYS 68 93 93 LYS LYS A . n A 1 69 GLU 69 94 94 GLU GLU A . n A 1 70 GLU 70 95 95 GLU GLU A . n A 1 71 LEU 71 96 96 LEU LEU A . n A 1 72 GLU 72 97 97 GLU GLU A . n A 1 73 SER 73 98 98 SER SER A . n A 1 74 TYR 74 99 99 TYR TYR A . n A 1 75 PRO 75 100 100 PRO PRO A . n A 1 76 LEU 76 101 101 LEU LEU A . n A 1 77 ASP 77 102 102 ASP ASP A . n A 1 78 ALA 78 103 103 ALA ALA A . n A 1 79 ILE 79 104 104 ILE ILE A . n A 1 80 VAL 80 105 105 VAL VAL A . n A 1 81 ARG 81 106 106 ARG ARG A . n A 1 82 CYS 82 107 107 CYS CYS A . n A 1 83 ASP 83 108 108 ASP ASP A . n A 1 84 ALA 84 109 109 ALA ALA A . n A 1 85 VAL 85 110 110 VAL VAL A . n A 1 86 MSE 86 111 111 MSE MSE A . n A 1 87 PRO 87 112 112 PRO PRO A . n A 1 88 ARG 88 113 113 ARG ARG A . n A 1 89 GLY 89 114 114 GLY GLY A . n A 1 90 ARG 90 115 115 ARG ARG A . n A 1 91 SER 91 116 116 SER SER A . n A 1 92 ARG 92 117 117 ARG ARG A . n A 1 93 SER 93 118 118 SER SER A . n A 1 94 LEU 94 119 119 LEU LEU A . n A 1 95 LEU 95 120 120 LEU LEU A . n A 1 96 LEU 96 121 121 LEU LEU A . n A 1 97 LEU 97 122 122 LEU LEU A . n A 1 98 VAL 98 123 123 VAL VAL A . n A 1 99 CYS 99 124 124 CYS CYS A . n A 1 100 GLN 100 125 125 GLN GLN A . n A 1 101 GLU 101 126 126 GLU GLU A . n A 1 102 PRO 102 127 127 PRO PRO A . n A 1 103 GLU 103 128 128 GLU GLU A . n A 1 104 ARG 104 129 129 ARG ARG A . n A 1 105 ALA 105 130 130 ALA ALA A . n A 1 106 GLN 106 131 131 GLN GLN A . n A 1 107 PRO 107 132 132 PRO PRO A . n A 1 108 ASP 108 133 133 ASP ASP A . n A 1 109 VAL 109 134 134 VAL VAL A . n A 1 110 HIS 110 135 135 HIS HIS A . n A 1 111 PHE 111 136 136 PHE PHE A . n A 1 112 PHE 112 137 137 PHE PHE A . n A 1 113 GLN 113 138 138 GLN GLN A . n A 1 114 GLY 114 139 139 GLY GLY A . n A 1 115 LEU 115 140 140 LEU LEU A . n A 1 116 LEU 116 141 141 LEU LEU A . n A 1 117 LEU 117 142 142 LEU LEU A . n A 1 118 GLY 118 143 143 GLY GLY A . n A 1 119 ALA 119 144 144 ALA ALA A . n A 1 120 GLU 120 145 145 GLU GLU A . n A 1 121 LEU 121 146 146 LEU LEU A . n A 1 122 ILE 122 147 147 ILE ILE A . n A 1 123 ARG 123 148 148 ARG ARG A . n A 1 124 GLU 124 149 149 GLU GLU A . n A 1 125 ASP 125 150 150 ASP ASP A . n A 1 126 ILE 126 151 151 ILE ILE A . n A 1 127 GLN 127 152 152 GLN GLN A . n A 1 128 GLY 128 153 153 GLY GLY A . n A 1 129 ALA 129 154 154 ALA ALA A . n A 1 130 LEU 130 155 155 LEU LEU A . n A 1 131 GLN 131 156 156 GLN GLN A . n A 1 132 ASN 132 157 157 ASN ASN A . n A 1 133 TYR 133 158 158 TYR TYR A . n A 1 134 ARG 134 159 159 ARG ARG A . n A 1 135 SER 135 160 ? ? ? A . n A 1 136 GLY 136 161 ? ? ? A . n A 1 137 ARG 137 162 ? ? ? A . n A 1 138 GLY 138 163 ? ? ? A . n A 1 139 GLU 139 164 ? ? ? A . n A 1 140 ARG 140 165 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1500 1500 CA CA A . C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 5 5 HOH HOH A . C 3 HOH 6 6 6 HOH HOH A . C 3 HOH 7 7 7 HOH HOH A . C 3 HOH 8 8 8 HOH HOH A . C 3 HOH 9 9 9 HOH HOH A . C 3 HOH 10 10 10 HOH HOH A . C 3 HOH 11 11 11 HOH HOH A . C 3 HOH 12 12 12 HOH HOH A . C 3 HOH 13 13 13 HOH HOH A . C 3 HOH 14 14 14 HOH HOH A . C 3 HOH 15 15 15 HOH HOH A . C 3 HOH 16 16 16 HOH HOH A . C 3 HOH 17 17 17 HOH HOH A . C 3 HOH 18 18 18 HOH HOH A . C 3 HOH 19 19 19 HOH HOH A . C 3 HOH 20 20 20 HOH HOH A . C 3 HOH 21 22 22 HOH HOH A . C 3 HOH 22 23 23 HOH HOH A . C 3 HOH 23 200 200 HOH HOH A . C 3 HOH 24 201 201 HOH HOH A . C 3 HOH 25 202 202 HOH HOH A . C 3 HOH 26 203 203 HOH HOH A . C 3 HOH 27 204 204 HOH HOH A . C 3 HOH 28 205 205 HOH HOH A . C 3 HOH 29 206 206 HOH HOH A . C 3 HOH 30 207 207 HOH HOH A . C 3 HOH 31 208 208 HOH HOH A . C 3 HOH 32 209 209 HOH HOH A . C 3 HOH 33 211 211 HOH HOH A . C 3 HOH 34 212 212 HOH HOH A . C 3 HOH 35 213 213 HOH HOH A . C 3 HOH 36 216 216 HOH HOH A . C 3 HOH 37 217 217 HOH HOH A . C 3 HOH 38 300 300 HOH HOH A . C 3 HOH 39 301 301 HOH HOH A . C 3 HOH 40 303 303 HOH HOH A . C 3 HOH 41 304 304 HOH HOH A . C 3 HOH 42 305 305 HOH HOH A . C 3 HOH 43 306 306 HOH HOH A . C 3 HOH 44 307 307 HOH HOH A . C 3 HOH 45 308 308 HOH HOH A . C 3 HOH 46 309 309 HOH HOH A . C 3 HOH 47 310 310 HOH HOH A . C 3 HOH 48 311 311 HOH HOH A . C 3 HOH 49 312 312 HOH HOH A . C 3 HOH 50 313 313 HOH HOH A . C 3 HOH 51 315 315 HOH HOH A . C 3 HOH 52 316 316 HOH HOH A . C 3 HOH 53 317 317 HOH HOH A . C 3 HOH 54 318 318 HOH HOH A . C 3 HOH 55 319 319 HOH HOH A . C 3 HOH 56 321 321 HOH HOH A . C 3 HOH 57 500 500 HOH HOH A . C 3 HOH 58 501 501 HOH HOH A . C 3 HOH 59 502 502 HOH HOH A . C 3 HOH 60 503 503 HOH HOH A . C 3 HOH 61 504 504 HOH HOH A . C 3 HOH 62 505 505 HOH HOH A . C 3 HOH 63 506 506 HOH HOH A . C 3 HOH 64 507 507 HOH HOH A . C 3 HOH 65 508 508 HOH HOH A . C 3 HOH 66 509 509 HOH HOH A . C 3 HOH 67 510 510 HOH HOH A . C 3 HOH 68 511 511 HOH HOH A . C 3 HOH 69 512 512 HOH HOH A . C 3 HOH 70 513 513 HOH HOH A . C 3 HOH 71 514 514 HOH HOH A . C 3 HOH 72 515 515 HOH HOH A . C 3 HOH 73 516 516 HOH HOH A . C 3 HOH 74 517 517 HOH HOH A . C 3 HOH 75 800 800 HOH HOH A . C 3 HOH 76 801 801 HOH HOH A . C 3 HOH 77 802 802 HOH HOH A . C 3 HOH 78 803 803 HOH HOH A . C 3 HOH 79 804 804 HOH HOH A . C 3 HOH 80 805 805 HOH HOH A . C 3 HOH 81 806 806 HOH HOH A . C 3 HOH 82 808 808 HOH HOH A . C 3 HOH 83 809 809 HOH HOH A . C 3 HOH 84 810 810 HOH HOH A . C 3 HOH 85 811 811 HOH HOH A . C 3 HOH 86 814 814 HOH HOH A . C 3 HOH 87 1000 1000 HOH HOH A . C 3 HOH 88 1001 1001 HOH HOH A . C 3 HOH 89 1002 1002 HOH HOH A . C 3 HOH 90 1003 1003 HOH HOH A . C 3 HOH 91 1006 1006 HOH HOH A . C 3 HOH 92 1008 1008 HOH HOH A . C 3 HOH 93 1009 1009 HOH HOH A . C 3 HOH 94 1010 1010 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 5 A MSE 30 ? MET SELENOMETHIONINE 2 A MSE 40 A MSE 65 ? MET SELENOMETHIONINE 3 A MSE 51 A MSE 76 ? MET SELENOMETHIONINE 4 A MSE 86 A MSE 111 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 39.9260000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? C HOH . ? A HOH 2 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 216 ? 1_555 96.1 ? 2 O ? C HOH . ? A HOH 2 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? A ALA 6 ? A ALA 31 ? 1_555 144.8 ? 3 O ? C HOH . ? A HOH 216 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? A ALA 6 ? A ALA 31 ? 1_555 86.3 ? 4 O ? C HOH . ? A HOH 2 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 3 ? 1_555 135.1 ? 5 O ? C HOH . ? A HOH 216 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 3 ? 1_555 107.6 ? 6 O ? A ALA 6 ? A ALA 31 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 3 ? 1_555 75.9 ? 7 O ? C HOH . ? A HOH 2 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 200 ? 1_555 87.8 ? 8 O ? C HOH . ? A HOH 216 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 200 ? 1_555 167.0 ? 9 O ? A ALA 6 ? A ALA 31 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 200 ? 1_555 83.4 ? 10 O ? C HOH . ? A HOH 3 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 200 ? 1_555 77.5 ? 11 O ? C HOH . ? A HOH 2 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 201 ? 1_555 73.3 ? 12 O ? C HOH . ? A HOH 216 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 201 ? 1_555 77.6 ? 13 O ? A ALA 6 ? A ALA 31 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 201 ? 1_555 73.0 ? 14 O ? C HOH . ? A HOH 3 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 201 ? 1_555 148.0 ? 15 O ? C HOH . ? A HOH 200 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 O ? C HOH . ? A HOH 201 ? 1_555 91.8 ? 16 O ? C HOH . ? A HOH 2 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 OD1 ? A ASP 125 ? A ASP 150 ? 1_555 70.8 ? 17 O ? C HOH . ? A HOH 216 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 OD1 ? A ASP 125 ? A ASP 150 ? 1_555 79.5 ? 18 O ? A ALA 6 ? A ALA 31 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 OD1 ? A ASP 125 ? A ASP 150 ? 1_555 143.4 ? 19 O ? C HOH . ? A HOH 3 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 OD1 ? A ASP 125 ? A ASP 150 ? 1_555 76.8 ? 20 O ? C HOH . ? A HOH 200 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 OD1 ? A ASP 125 ? A ASP 150 ? 1_555 113.6 ? 21 O ? C HOH . ? A HOH 201 ? 1_555 CA ? B CA . ? A CA 1500 ? 1_555 OD1 ? A ASP 125 ? A ASP 150 ? 1_555 134.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-04 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 301 ? ? O A HOH 321 ? ? 2.16 2 1 NH1 A ARG 117 ? ? O A GLY 139 ? ? 2.16 3 1 OD1 A ASP 57 ? ? NH2 A ARG 60 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 SG _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 CYS _pdbx_validate_symm_contact.auth_seq_id_1 45 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 SG _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 CYS _pdbx_validate_symm_contact.auth_seq_id_2 45 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_555 _pdbx_validate_symm_contact.dist 2.12 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A VAL 123 ? ? CG1 A VAL 123 ? ? 1.679 1.524 0.155 0.021 N 2 1 CA A ALA 144 ? ? CB A ALA 144 ? ? 1.658 1.520 0.138 0.021 N 3 1 CG A GLU 149 ? ? CD A GLU 149 ? ? 1.607 1.515 0.092 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 32 ? ? CG A ASP 32 ? ? OD2 A ASP 32 ? ? 110.69 118.30 -7.61 0.90 N 2 1 CA A CYS 45 ? ? CB A CYS 45 ? ? SG A CYS 45 ? ? 98.94 114.00 -15.06 1.80 N 3 1 CB A ASP 66 ? ? CG A ASP 66 ? ? OD1 A ASP 66 ? ? 125.18 118.30 6.88 0.90 N 4 1 CB A ASP 66 ? ? CG A ASP 66 ? ? OD2 A ASP 66 ? ? 108.49 118.30 -9.81 0.90 N 5 1 CG1 A VAL 105 ? ? CB A VAL 105 ? ? CG2 A VAL 105 ? ? 99.90 110.90 -11.00 1.60 N 6 1 NE A ARG 129 ? ? CZ A ARG 129 ? ? NH1 A ARG 129 ? ? 123.41 120.30 3.11 0.50 N 7 1 CB A ASP 133 ? ? CG A ASP 133 ? ? OD1 A ASP 133 ? ? 109.29 118.30 -9.01 0.90 N 8 1 CB A LEU 141 ? ? CG A LEU 141 ? ? CD2 A LEU 141 ? ? 99.54 111.00 -11.46 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 91 ? ? -109.71 -61.24 2 1 LEU A 140 ? ? -103.21 -116.65 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 26 ? A SER 1 2 1 Y 1 A THR 27 ? A THR 2 3 1 Y 1 A VAL 28 ? A VAL 3 4 1 Y 1 A VAL 29 ? A VAL 4 5 1 Y 1 A SER 160 ? A SER 135 6 1 Y 1 A GLY 161 ? A GLY 136 7 1 Y 1 A ARG 162 ? A ARG 137 8 1 Y 1 A GLY 163 ? A GLY 138 9 1 Y 1 A GLU 164 ? A GLU 139 10 1 Y 1 A ARG 165 ? A ARG 140 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH #