HEADER DNA BINDING PROTEIN 08-JUL-05 2CYY TITLE CRYSTAL STRUCTURE OF PH1519 FROM PYROCOCCUS HORIKOSII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HTH-TYPE TRANSCRIPTIONAL REGULATOR PH1519; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL-X; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS STRUCTURAL GENOMICS, PYROCOCCUS HORIKOSII OT3, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.OKAZAKI,N.NAKANO,A.SHINKAI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2CYY 1 VERSN REVDAT 2 24-FEB-09 2CYY 1 VERSN REVDAT 1 19-SEP-06 2CYY 0 JRNL AUTH N.OKAZAKI,N.NAKANO,A.SHINKAI,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF PH1519 FROM PYROCOCCUS HORIKOSII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHPUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1138 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 151 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1191 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.72000 REMARK 3 B22 (A**2) : -2.72000 REMARK 3 B33 (A**2) : 5.45000 REMARK 3 B12 (A**2) : -0.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.76 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CYY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB024780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901, 0.97940, 0.96000 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22776 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.100 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : 0.34100 REMARK 200 FOR SHELL : 8.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25.5% PEG4000, 0.085M TRIS-HCL, 0.17M REMARK 280 LI2(SO4), 15% GLYCEROL, PH 8.5, MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.90533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.81067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.85800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.76333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 7.95267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 15.90533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 31.81067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.76333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 23.85800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 7.95267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE TWO FOLD AXIS: -X+Y, Y,-Z+1/2. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 23.85800 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2164 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2165 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2197 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2166 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2148 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2094 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2154 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2153 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2167 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2206 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A2003 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2202 O HOH A 2202 7555 1.47 REMARK 500 O HOH A 2133 O HOH A 2133 11555 2.04 REMARK 500 O HOH A 2146 O HOH A 2146 7555 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 29.54 -72.36 REMARK 500 ILE A 30 -60.02 -141.25 REMARK 500 LYS A 53 169.67 179.81 REMARK 500 GLU A 144 107.04 -160.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2146 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH A2157 DISTANCE = 5.21 ANGSTROMS REMARK 525 HOH A2168 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A2192 DISTANCE = 9.48 ANGSTROMS REMARK 525 HOH A2193 DISTANCE = 5.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2046 O REMARK 620 2 HOH A2007 O 122.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 112 O REMARK 620 2 SER A 66 OG 82.4 REMARK 620 3 HOH A2018 O 80.2 80.3 REMARK 620 4 GLY A 64 O 90.5 90.6 167.7 REMARK 620 5 HOH A2098 O 102.0 175.3 98.9 90.8 REMARK 620 6 HOH A2138 O 160.4 79.2 90.0 96.4 96.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2018 O REMARK 620 2 HOH A2029 O 149.4 REMARK 620 3 SER A 66 OG 63.2 88.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2218 O REMARK 620 2 HOH A2054 O 158.7 REMARK 620 3 HOH A2140 O 81.0 117.7 REMARK 620 4 HOH A2217 O 89.1 79.9 147.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLN A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001001519.1 RELATED DB: TARGETDB DBREF 2CYY A 1 151 UNP O59188 REG6_PYRHO 1 151 SEQADV 2CYY MSE A 1 UNP O59188 MET 1 MODIFIED RESIDUE SEQADV 2CYY MSE A 67 UNP O59188 MET 67 MODIFIED RESIDUE SEQADV 2CYY MSE A 105 UNP O59188 MET 105 MODIFIED RESIDUE SEQADV 2CYY MSE A 136 UNP O59188 MET 136 MODIFIED RESIDUE SEQRES 1 A 151 MSE ARG VAL PRO LEU ASP GLU ILE ASP LYS LYS ILE ILE SEQRES 2 A 151 LYS ILE LEU GLN ASN ASP GLY LYS ALA PRO LEU ARG GLU SEQRES 3 A 151 ILE SER LYS ILE THR GLY LEU ALA GLU SER THR ILE HIS SEQRES 4 A 151 GLU ARG ILE ARG LYS LEU ARG GLU SER GLY VAL ILE LYS SEQRES 5 A 151 LYS PHE THR ALA ILE ILE ASP PRO GLU ALA LEU GLY TYR SEQRES 6 A 151 SER MSE LEU ALA PHE ILE LEU VAL LYS VAL LYS ALA GLY SEQRES 7 A 151 LYS TYR SER GLU VAL ALA SER ASN LEU ALA LYS TYR PRO SEQRES 8 A 151 GLU ILE VAL GLU VAL TYR GLU THR THR GLY ASP TYR ASP SEQRES 9 A 151 MSE VAL VAL LYS ILE ARG THR LYS ASN SER GLU GLU LEU SEQRES 10 A 151 ASN ASN PHE LEU ASP LEU ILE GLY SER ILE PRO GLY VAL SEQRES 11 A 151 GLU GLY THR HIS THR MSE ILE VAL LEU LYS THR HIS LYS SEQRES 12 A 151 GLU THR THR GLU LEU PRO ILE LYS MODRES 2CYY MSE A 1 MET SELENOMETHIONINE MODRES 2CYY MSE A 67 MET SELENOMETHIONINE MODRES 2CYY MSE A 105 MET SELENOMETHIONINE MODRES 2CYY MSE A 136 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 67 13 HET MSE A 105 8 HET MSE A 136 8 HET CA A2001 1 HET CA A2002 1 HET CA A2003 1 HET CA A2004 1 HET GLN A1001 10 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM GLN GLUTAMINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 CA 4(CA 2+) FORMUL 6 GLN C5 H10 N2 O3 FORMUL 7 HOH *214(H2 O) HELIX 1 1 ASP A 6 ASP A 19 1 14 HELIX 2 2 PRO A 23 GLY A 32 1 10 HELIX 3 3 ALA A 34 GLY A 49 1 16 HELIX 4 4 ASP A 59 GLY A 64 5 6 HELIX 5 5 LYS A 79 LYS A 89 1 11 HELIX 6 6 ASN A 113 SER A 126 1 14 SHEET 1 A 4 ILE A 93 GLU A 98 0 SHEET 2 A 4 MSE A 105 THR A 111 -1 O VAL A 106 N TYR A 97 SHEET 3 A 4 MSE A 67 VAL A 75 -1 N VAL A 73 O MSE A 105 SHEET 4 A 4 VAL A 130 ILE A 137 -1 O HIS A 134 N LEU A 72 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C SER A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N LEU A 68 1555 1555 1.33 LINK C ASP A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N VAL A 106 1555 1555 1.33 LINK C THR A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N ILE A 137 1555 1555 1.33 LINK CA CA A2001 O HOH A2046 1555 1555 2.49 LINK CA CA A2002 O LYS A 112 1555 1555 2.29 LINK CA CA A2002 OG SER A 66 1555 1555 2.68 LINK CA CA A2002 O HOH A2018 1555 1555 2.45 LINK CA CA A2002 O GLY A 64 1555 1555 2.34 LINK CA CA A2002 O HOH A2098 1555 1555 2.49 LINK CA CA A2003 O HOH A2018 1555 1555 3.37 LINK CA CA A2003 O HOH A2029 1555 1555 3.07 LINK CA CA A2003 OG SER A 66 1555 1555 2.91 LINK CA CA A2004 O HOH A2218 1555 1555 2.07 LINK CA CA A2004 O HOH A2054 1555 1555 2.17 LINK CA CA A2004 O HOH A2140 1555 1555 2.66 LINK CA CA A2004 O HOH A2217 1555 1555 2.16 LINK CA CA A2001 O HOH A2007 1555 11555 2.77 LINK CA CA A2002 O HOH A2138 1555 9555 2.34 LINK CA CA A2003 OG SER A 66 1555 9555 2.84 LINK CA CA A2003 O HOH A2018 1555 9555 3.37 LINK CA CA A2003 O HOH A2029 1555 9555 3.06 SITE 1 AC1 3 THR A 146 HOH A2007 HOH A2046 SITE 1 AC2 6 GLY A 64 SER A 66 LYS A 112 HOH A2018 SITE 2 AC2 6 HOH A2098 HOH A2138 SITE 1 AC3 2 SER A 66 HOH A2029 SITE 1 AC4 4 HOH A2054 HOH A2140 HOH A2217 HOH A2218 SITE 1 AC5 11 GLU A 61 SER A 66 LEU A 68 ARG A 110 SITE 2 AC5 11 SER A 114 VAL A 138 LEU A 139 THR A 141 SITE 3 AC5 11 HOH A2020 HOH A2024 HOH A2213 CRYST1 130.573 130.573 47.716 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007659 0.004422 0.000000 0.00000 SCALE2 0.000000 0.008843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020957 0.00000 HETATM 1 N MSE A 1 22.775 40.173 1.527 1.00 33.56 N HETATM 2 CA MSE A 1 23.048 40.333 2.984 1.00 32.97 C HETATM 3 C MSE A 1 22.810 41.783 3.402 1.00 33.08 C HETATM 4 O MSE A 1 23.444 42.699 2.879 1.00 33.33 O HETATM 5 CB MSE A 1 24.489 39.918 3.278 1.00 33.04 C HETATM 6 CG MSE A 1 24.882 39.960 4.737 1.00 33.48 C HETATM 7 SE MSE A 1 26.603 39.116 4.993 1.00 35.77 SE HETATM 8 CE MSE A 1 26.428 38.641 6.859 1.00 31.76 C