data_2D17 # _entry.id 2D17 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D17 pdb_00002d17 10.2210/pdb2d17/pdb RCSB RCSB024860 ? ? WWPDB D_1000024860 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2D18 'Solution structure of loop region of the extended-duplex dimer' unspecified PDB 2D19 'Solution structure of loop region of the kissing-loop dimer' unspecified PDB 2D1A 'Solution structure model of the extended-duplex dimer' unspecified PDB 2D1B 'Solution structure models of the kissing-loop dimer' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D17 _pdbx_database_status.recvd_initial_deposition_date 2005-08-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baba, S.' 1 'Takahashi, K.' 2 'Noguchi, S.' 3 'Takaku, H.' 4 'Koyanagi, Y.' 5 'Yamamoto, N.' 6 'Kawai, G.' 7 # _citation.id primary _citation.title 'Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.' _citation.journal_abbrev 'J.Biochem.(Tokyo)' _citation.journal_volume 138 _citation.page_first 583 _citation.page_last 592 _citation.year 2005 _citation.journal_id_ASTM JOBIAO _citation.country JA _citation.journal_id_ISSN 0021-924X _citation.journal_id_CSD 0418 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16272570 _citation.pdbx_database_id_DOI 10.1093/jb/mvi158 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baba, S.' 1 ? primary 'Takahashi, K.' 2 ? primary 'Noguchi, S.' 3 ? primary 'Takaku, H.' 4 ? primary 'Koyanagi, Y.' 5 ? primary 'Yamamoto, N.' 6 ? primary 'Kawai, G.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*GP*GP*CP*AP*AP*GP*AP*GP*GP*CP*GP*AP*CP*CP*C)-3'" 5174.190 1 ? ? ? ? 2 polymer syn "5'-R(*GP*GP*GP*UP*CP*GP*GP*CP*UP*UP*GP*CP*UP*G)-3'" 4511.691 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CGGCAAGAGGCGACCC CGGCAAGAGGCGACCC A ? 2 polyribonucleotide no no GGGUCGGCUUGCUG GGGUCGGCUUGCUG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 G n 1 4 C n 1 5 A n 1 6 A n 1 7 G n 1 8 A n 1 9 G n 1 10 G n 1 11 C n 1 12 G n 1 13 A n 1 14 C n 1 15 C n 1 16 C n 2 1 G n 2 2 G n 2 3 G n 2 4 U n 2 5 C n 2 6 G n 2 7 G n 2 8 C n 2 9 U n 2 10 U n 2 11 G n 2 12 C n 2 13 U n 2 14 G n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 2D17 2D17 ? ? ? 2 2 PDB 2D17 2D17 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2D17 A 1 ? 16 ? 2D17 1 ? 16 ? 1 16 2 2 2D17 B 1 ? 14 ? 2D17 1 ? 14 ? 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 2 2 1 '1D-HSQC-selected spectrum' 4 3 1 '1D-HSQC-filtered spectrum' 4 4 1 '2D NOESY' 7 5 2 '2D TOCSY' 1 6 2 '2D NOESY' 1 7 2 '2D-w2-filtered NOESY' 3 8 2 '2D-w2-filtered NOESY' 5 9 2 '2D TOCSY' 6 10 2 '2D NOESY' 6 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 ambient 7.0 '50mM NaCl' . K 2 298 ambient 7.0 '50mM NaCl' . K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.5mM 34-mer RNA FRAGMENT; 10mM phosphate buffer, 50 mM NaCl; 100% D2O' '100% D2O' 2 '0.5mM 34-mer RNA FRAGMENT; 10mM phosphate buffer, 50 mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' 3 '0.4mM [G-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50 mM NaCl; 100% D2O' '100% D2O' 4 '0.4mM [G-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50 mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' 5 '0.2mM [A-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50 mM NaCl; 100% D2O' '100% D2O' 6 '1.0mM 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50 mM NaCl; 100% D2O' '100% D2O' 7 '1.0mM 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50 mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DRX Bruker 600 ? # _pdbx_nmr_refine.entry_id 2D17 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;The structures are based on a total of 529 restraints, 345 are NOE-derived distance constraints, 126 dihedral angle restraints, 58 distance restraints from hydrogen bonds. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2D17 _pdbx_nmr_details.text ;Enzymatical synthesized 34-mer RNA corresponding to the stem-bulge-stem region of the HIV-1 dimerization initiation site. Enzymatical synthesized [G-13C/15N] labeled 39-mer RNA corresponding to the HIV-1 dimerization initiation site. Enzymatical synthesized [A-13C/15N] labeled 39-mer RNA corresponding to the HIV-1 dimerization initiation site. Enzymatical synthesized 39-mer RNA corresponding to the HIV-1 dimerization initiation site. ; # _pdbx_nmr_ensemble.entry_id 2D17 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 11 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D17 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing XwinNMR 2.6 BRUKER 1 'data analysis' Felix 97.0 'Molecular Simulations' 2 'structure solution' Discover 97.0 Accelrys 3 refinement Discover 97.0 Accelrys 4 # _exptl.entry_id 2D17 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D17 _struct.title 'Solution RNA structure of stem-bulge-stem region of the HIV-1 dimerization initiation site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2D17 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'DIS, HIV-1, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 1 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 1 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 1 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 13 O2 ? ? A G 2 B U 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 B U 13 N3 ? ? A G 2 B U 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 3 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 3 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 3 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 10 N3 ? ? A A 5 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 10 O4 ? ? A A 5 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 B U 9 N3 ? ? A A 6 B U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 B U 9 O4 ? ? A A 6 B U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 7 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 7 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 7 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N1 ? ? ? 1_555 B G 7 N1 ? ? A A 8 B G 7 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog20 hydrog ? ? A A 8 N6 ? ? ? 1_555 B G 7 O6 ? ? A A 8 B G 7 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 11 N3 ? ? A G 9 A C 11 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 B G 6 O6 ? ? A G 9 B G 6 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 12 O6 ? ? A G 10 A G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 12 N7 ? ? A G 10 A G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 B U 4 O4 ? ? A G 10 B U 4 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 11 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 11 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 11 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 12 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 12 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 12 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 13 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 13 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 13 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 13 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 14 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 14 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 14 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 15 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 15 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 15 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 16 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 16 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 16 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 16 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 16 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 16 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2D17 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D17 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 G 3 3 3 G G B . n B 2 4 U 4 4 4 U U B . n B 2 5 C 5 5 5 C C B . n B 2 6 G 6 6 6 G G B . n B 2 7 G 7 7 7 G G B . n B 2 8 C 8 8 8 C C B . n B 2 9 U 9 9 9 U U B . n B 2 10 U 10 10 10 U U B . n B 2 11 G 11 11 11 G G B . n B 2 12 C 12 12 12 C C B . n B 2 13 U 13 13 13 U U B . n B 2 14 G 14 14 14 G G B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 5 "O2'" A C 11 ? ? H8 A G 12 ? ? 1.49 2 8 H8 A G 9 ? ? C8 A G 10 ? ? 1.58 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 112.71 108.50 4.21 0.70 N 2 1 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 115.17 108.50 6.67 0.70 N 3 1 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.10 108.50 4.60 0.70 N 4 1 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.53 108.50 5.03 0.70 N 5 1 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 114.27 108.50 5.77 0.70 N 6 1 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 112.79 108.50 4.29 0.70 N 7 1 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 112.80 108.50 4.30 0.70 N 8 1 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.45 108.50 4.95 0.70 N 9 1 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.41 108.50 4.91 0.70 N 10 1 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.66 108.50 5.16 0.70 N 11 2 "O4'" A C 1 ? ? "C1'" A C 1 ? ? N1 A C 1 ? ? 113.08 108.50 4.58 0.70 N 12 2 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 113.50 108.50 5.00 0.70 N 13 2 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.17 108.50 4.67 0.70 N 14 2 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.18 108.50 4.68 0.70 N 15 2 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.54 108.50 5.04 0.70 N 16 2 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 113.42 108.50 4.92 0.70 N 17 2 "O4'" B C 8 ? ? "C1'" B C 8 ? ? N1 B C 8 ? ? 112.87 108.50 4.37 0.70 N 18 2 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 114.36 108.50 5.86 0.70 N 19 2 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.02 108.50 4.52 0.70 N 20 2 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.54 108.50 5.04 0.70 N 21 2 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.70 108.50 5.20 0.70 N 22 3 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 113.16 108.50 4.66 0.70 N 23 3 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.24 108.50 4.74 0.70 N 24 3 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.12 108.50 4.62 0.70 N 25 3 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.37 108.50 4.87 0.70 N 26 3 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 113.26 108.50 4.76 0.70 N 27 3 "O4'" B G 7 ? ? "C1'" B G 7 ? ? N9 B G 7 ? ? 112.74 108.50 4.24 0.70 N 28 3 "O4'" B C 8 ? ? "C1'" B C 8 ? ? N1 B C 8 ? ? 115.14 108.50 6.64 0.70 N 29 3 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.36 108.50 4.86 0.70 N 30 3 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.51 108.50 5.01 0.70 N 31 3 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.44 108.50 4.94 0.70 N 32 4 "O4'" A C 1 ? ? "C1'" A C 1 ? ? N1 A C 1 ? ? 112.76 108.50 4.26 0.70 N 33 4 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.66 108.50 5.16 0.70 N 34 4 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.44 108.50 4.94 0.70 N 35 4 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 114.38 108.50 5.88 0.70 N 36 4 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 112.99 108.50 4.49 0.70 N 37 4 "O4'" B C 8 ? ? "C1'" B C 8 ? ? N1 B C 8 ? ? 113.46 108.50 4.96 0.70 N 38 4 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.60 108.50 5.10 0.70 N 39 4 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.53 108.50 5.03 0.70 N 40 4 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.44 108.50 4.94 0.70 N 41 5 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 113.69 108.50 5.19 0.70 N 42 5 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.49 108.50 4.99 0.70 N 43 5 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.20 108.50 4.70 0.70 N 44 5 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.60 108.50 5.10 0.70 N 45 5 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 113.63 108.50 5.13 0.70 N 46 5 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.42 108.50 4.92 0.70 N 47 5 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.65 108.50 5.15 0.70 N 48 5 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.66 108.50 5.16 0.70 N 49 6 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 113.18 108.50 4.68 0.70 N 50 6 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 113.29 108.50 4.79 0.70 N 51 6 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.24 108.50 4.74 0.70 N 52 6 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.56 108.50 5.06 0.70 N 53 6 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 114.10 108.50 5.60 0.70 N 54 6 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 113.43 108.50 4.93 0.70 N 55 6 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 114.34 108.50 5.84 0.70 N 56 6 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 112.91 108.50 4.41 0.70 N 57 6 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.44 108.50 4.94 0.70 N 58 6 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.34 108.50 4.84 0.70 N 59 7 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.56 108.50 5.06 0.70 N 60 7 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.40 108.50 4.90 0.70 N 61 7 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.85 108.50 5.35 0.70 N 62 7 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.52 108.50 5.02 0.70 N 63 7 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.44 108.50 4.94 0.70 N 64 7 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.66 108.50 5.16 0.70 N 65 8 "O4'" A C 1 ? ? "C1'" A C 1 ? ? N1 A C 1 ? ? 112.90 108.50 4.40 0.70 N 66 8 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 113.32 108.50 4.82 0.70 N 67 8 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 114.04 108.50 5.54 0.70 N 68 8 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 112.95 108.50 4.45 0.70 N 69 8 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.22 108.50 4.72 0.70 N 70 8 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.55 108.50 5.05 0.70 N 71 8 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 113.53 108.50 5.03 0.70 N 72 8 "O4'" B C 8 ? ? "C1'" B C 8 ? ? N1 B C 8 ? ? 113.16 108.50 4.66 0.70 N 73 8 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 114.31 108.50 5.81 0.70 N 74 8 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.22 108.50 4.72 0.70 N 75 8 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.37 108.50 4.87 0.70 N 76 8 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.48 108.50 4.98 0.70 N 77 9 C2 A G 10 ? ? N3 A G 10 ? ? C4 A G 10 ? ? 114.97 111.90 3.07 0.50 N 78 9 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 115.55 108.50 7.05 0.70 N 79 9 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.24 108.50 4.74 0.70 N 80 9 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.25 108.50 4.75 0.70 N 81 9 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.80 108.50 5.30 0.70 N 82 9 "O4'" B C 8 ? ? "C1'" B C 8 ? ? N1 B C 8 ? ? 113.56 108.50 5.06 0.70 N 83 9 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 113.87 108.50 5.37 0.70 N 84 9 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.66 108.50 5.16 0.70 N 85 9 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.50 108.50 5.00 0.70 N 86 9 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.27 108.50 4.77 0.70 N 87 10 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 113.23 108.50 4.73 0.70 N 88 10 C2 A G 7 ? ? N3 A G 7 ? ? C4 A G 7 ? ? 115.07 111.90 3.17 0.50 N 89 10 N3 A G 7 ? ? C4 A G 7 ? ? C5 A G 7 ? ? 125.50 128.60 -3.10 0.50 N 90 10 C8 A G 7 ? ? N9 A G 7 ? ? C4 A G 7 ? ? 103.93 106.40 -2.47 0.40 N 91 10 "O4'" A G 10 ? ? "C1'" A G 10 ? ? N9 A G 10 ? ? 113.33 108.50 4.83 0.70 N 92 10 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 115.84 108.50 7.34 0.70 N 93 10 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.35 108.50 4.85 0.70 N 94 10 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.20 108.50 4.70 0.70 N 95 10 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.91 108.50 5.41 0.70 N 96 10 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 113.05 108.50 4.55 0.70 N 97 10 "O4'" B C 8 ? ? "C1'" B C 8 ? ? N1 B C 8 ? ? 112.84 108.50 4.34 0.70 N 98 10 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 113.28 108.50 4.78 0.70 N 99 10 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.51 108.50 5.01 0.70 N 100 10 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.56 108.50 5.06 0.70 N 101 10 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.45 108.50 4.95 0.70 N 102 11 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 113.42 108.50 4.92 0.70 N 103 11 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.07 108.50 4.57 0.70 N 104 11 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.18 108.50 4.68 0.70 N 105 11 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.12 108.50 4.62 0.70 N 106 11 "O4'" B C 5 ? ? "C1'" B C 5 ? ? N1 B C 5 ? ? 113.18 108.50 4.68 0.70 N 107 11 "O4'" B C 8 ? ? "C1'" B C 8 ? ? N1 B C 8 ? ? 113.88 108.50 5.38 0.70 N 108 11 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 113.30 108.50 4.80 0.70 N 109 11 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.44 108.50 4.94 0.70 N 110 11 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.47 108.50 4.97 0.70 N 111 11 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 113.57 108.50 5.07 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 6 ? ? 0.055 'SIDE CHAIN' 2 1 G A 7 ? ? 0.066 'SIDE CHAIN' 3 1 G A 10 ? ? 0.095 'SIDE CHAIN' 4 1 G B 7 ? ? 0.068 'SIDE CHAIN' 5 2 G A 7 ? ? 0.061 'SIDE CHAIN' 6 2 A A 8 ? ? 0.068 'SIDE CHAIN' 7 2 G A 10 ? ? 0.115 'SIDE CHAIN' 8 2 C A 11 ? ? 0.079 'SIDE CHAIN' 9 3 U B 9 ? ? 0.076 'SIDE CHAIN' 10 4 G A 9 ? ? 0.089 'SIDE CHAIN' 11 4 C B 8 ? ? 0.104 'SIDE CHAIN' 12 5 G A 7 ? ? 0.105 'SIDE CHAIN' 13 5 C A 11 ? ? 0.102 'SIDE CHAIN' 14 5 G A 12 ? ? 0.087 'SIDE CHAIN' 15 5 G B 7 ? ? 0.055 'SIDE CHAIN' 16 6 G A 12 ? ? 0.074 'SIDE CHAIN' 17 6 A A 13 ? ? 0.059 'SIDE CHAIN' 18 6 G B 2 ? ? 0.073 'SIDE CHAIN' 19 8 C A 11 ? ? 0.090 'SIDE CHAIN' 20 8 A A 13 ? ? 0.056 'SIDE CHAIN' 21 8 G B 11 ? ? 0.067 'SIDE CHAIN' 22 9 G A 7 ? ? 0.091 'SIDE CHAIN' 23 10 G A 10 ? ? 0.080 'SIDE CHAIN' 24 11 G A 7 ? ? 0.086 'SIDE CHAIN' 25 11 A A 8 ? ? 0.144 'SIDE CHAIN' 26 11 G A 9 ? ? 0.071 'SIDE CHAIN' 27 11 G A 12 ? ? 0.064 'SIDE CHAIN' 28 11 G B 3 ? ? 0.063 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2D17 'double helix' 2D17 'a-form double helix' 2D17 'parallel strands' 2D17 'mismatched base pair' 2D17 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 14 1_555 0.402 0.081 -0.578 33.659 -38.486 2.890 1 A_C1:G14_B A 1 ? B 14 ? 19 1 1 A G 2 1_555 B U 13 1_555 -1.589 -0.345 0.247 -4.299 -15.573 0.275 2 A_G2:U13_B A 2 ? B 13 ? 28 1 1 A G 3 1_555 B C 12 1_555 0.331 0.025 0.114 -2.194 -19.653 -0.637 3 A_G3:C12_B A 3 ? B 12 ? 19 1 1 A C 4 1_555 B G 11 1_555 0.122 0.000 0.075 1.476 -19.091 -1.092 4 A_C4:G11_B A 4 ? B 11 ? 19 1 1 A A 5 1_555 B U 10 1_555 -0.292 -0.096 0.393 -4.505 -14.552 -5.979 5 A_A5:U10_B A 5 ? B 10 ? 20 1 1 A A 6 1_555 B U 9 1_555 -0.399 -0.170 0.657 -5.090 -22.081 -3.636 6 A_A6:U9_B A 6 ? B 9 ? 20 1 1 A G 7 1_555 B C 8 1_555 0.263 0.002 0.315 -15.788 -26.103 -8.962 7 A_G7:C8_B A 7 ? B 8 ? 19 1 1 A A 8 1_555 B G 7 1_555 -0.762 1.516 0.498 -10.320 -17.123 -20.076 8 A_A8:G7_B A 8 ? B 7 ? 8 1 1 A G 9 1_555 B G 6 1_555 1.921 2.024 -0.192 -15.781 -17.888 -48.424 9 A_G9:G6_B A 9 ? B 6 ? ? ? 1 A G 12 1_555 B C 5 1_555 -0.922 -0.373 0.713 9.938 -16.990 -5.429 10 A_G12:C5_B A 12 ? B 5 ? 19 1 1 A A 13 1_555 B U 4 1_555 -0.382 -0.145 0.461 7.355 -25.161 -7.409 11 A_A13:U4_B A 13 ? B 4 ? 20 1 1 A C 14 1_555 B G 3 1_555 0.604 -0.150 0.374 0.215 -24.004 -1.578 12 A_C14:G3_B A 14 ? B 3 ? 19 1 1 A C 15 1_555 B G 2 1_555 -0.260 -0.050 0.424 -0.368 -20.515 -3.669 13 A_C15:G2_B A 15 ? B 2 ? 19 1 1 A C 16 1_555 B G 1 1_555 0.554 -0.174 0.478 -2.457 -17.578 -4.937 14 A_C16:G1_B A 16 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 14 1_555 A G 2 1_555 B U 13 1_555 -0.277 -1.973 3.475 -14.946 30.682 29.533 -4.988 -0.806 1.093 45.216 22.026 44.844 1 AA_C1G2:U13G14_BB A 1 ? B 14 ? A 2 ? B 13 ? 1 A G 2 1_555 B U 13 1_555 A G 3 1_555 B C 12 1_555 -0.359 -1.345 3.120 0.402 3.967 39.096 -2.441 0.579 2.971 5.909 -0.599 39.291 2 AA_G2G3:C12U13_BB A 2 ? B 13 ? A 3 ? B 12 ? 1 A G 3 1_555 B C 12 1_555 A C 4 1_555 B G 11 1_555 0.151 -1.862 2.968 1.418 1.365 30.592 -3.763 -0.035 2.888 2.583 -2.684 30.654 3 AA_G3C4:G11C12_BB A 3 ? B 12 ? A 4 ? B 11 ? 1 A C 4 1_555 B G 11 1_555 A A 5 1_555 B U 10 1_555 0.108 -2.055 2.992 -0.946 14.489 29.642 -5.541 -0.316 1.813 26.418 1.725 32.935 4 AA_C4A5:U10G11_BB A 4 ? B 11 ? A 5 ? B 10 ? 1 A A 5 1_555 B U 10 1_555 A A 6 1_555 B U 9 1_555 -0.122 -2.059 2.979 0.048 1.613 33.442 -3.812 0.219 2.879 2.801 -0.083 33.480 5 AA_A5A6:U9U10_BB A 5 ? B 10 ? A 6 ? B 9 ? 1 A A 6 1_555 B U 9 1_555 A G 7 1_555 B C 8 1_555 -0.546 -1.488 3.335 4.454 1.953 42.601 -2.231 1.191 3.197 2.678 -6.107 42.865 6 AA_A6G7:C8U9_BB A 6 ? B 9 ? A 7 ? B 8 ? 1 A G 7 1_555 B C 8 1_555 A A 8 1_555 B G 7 1_555 -0.705 -1.878 2.718 -1.338 2.902 29.597 -4.147 1.146 2.555 5.661 2.609 29.765 7 AA_G7A8:G7C8_BB A 7 ? B 8 ? A 8 ? B 7 ? 1 A A 8 1_555 B G 7 1_555 A G 9 1_555 B G 6 1_555 -1.311 -2.035 3.212 5.178 5.327 43.889 -3.142 2.174 2.795 7.066 -6.870 44.482 8 AA_A8G9:G6G7_BB A 8 ? B 7 ? A 9 ? B 6 ? 1 A G 9 1_555 B G 6 1_555 A G 12 1_555 B C 5 1_555 -1.567 -2.826 3.093 9.832 -0.438 50.176 -3.250 2.436 2.782 -0.511 -11.467 51.070 9 AA_G9G12:C5G6_BB A 9 ? B 6 ? A 12 ? B 5 ? 1 A G 12 1_555 B C 5 1_555 A A 13 1_555 B U 4 1_555 -0.169 -1.532 3.059 -0.090 4.614 38.141 -2.851 0.247 2.861 7.029 0.137 38.409 10 AA_G12A13:U4C5_BB A 12 ? B 5 ? A 13 ? B 4 ? 1 A A 13 1_555 B U 4 1_555 A C 14 1_555 B G 3 1_555 0.404 -1.563 3.208 2.560 5.236 37.503 -3.042 -0.309 2.991 8.084 -3.953 37.937 11 AA_A13C14:G3U4_BB A 13 ? B 4 ? A 14 ? B 3 ? 1 A C 14 1_555 B G 3 1_555 A C 15 1_555 B G 2 1_555 0.059 -1.719 2.930 1.568 8.452 30.153 -4.502 0.136 2.373 15.846 -2.939 31.327 12 AA_C14C15:G2G3_BB A 14 ? B 3 ? A 15 ? B 2 ? 1 A C 15 1_555 B G 2 1_555 A C 16 1_555 B G 1 1_555 0.295 -1.504 3.108 1.795 4.859 37.088 -2.933 -0.243 2.905 7.594 -2.805 37.435 13 AA_C15C16:G1G2_BB A 15 ? B 2 ? A 16 ? B 1 ? #