data_2D3V # _entry.id 2D3V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2D3V RCSB RCSB024954 WWPDB D_1000024954 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D3V _pdbx_database_status.recvd_initial_deposition_date 2005-10-03 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shiroishi, M.' 1 'Kajikawa, M.' 2 'Kuroki, K.' 3 'Ose, T.' 4 'Kohda, D.' 5 'Maenaka, K.' 6 # _citation.id primary _citation.title 'Crystal structure of the human monocyte-activating receptor,' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 281 _citation.page_first 19536 _citation.page_last 19544 _citation.year 2006 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16675463 _citation.pdbx_database_id_DOI 10.1074/jbc.M603076200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Shiroishi, M.' 1 primary 'Kajikawa, M.' 2 primary 'Kuroki, K.' 3 primary 'Ose, T.' 4 primary 'Kohda, D.' 5 primary 'Maenaka, K.' 6 # _cell.entry_id 2D3V _cell.length_a 28.080 _cell.length_b 58.645 _cell.length_c 131.619 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2D3V _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1' 22123.561 1 ? ? 'Extracellular domain' ? 2 water nat water 18.015 105 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Leukocyte Ig-like Receptor A5 (LILRA5/LIR9/ILT11)' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GNLSKATLWAEPGSVISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPS(MSE)TEHHAGRYRCY YYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQA LFPVGPVTPSHRW(MSE)LRCYGSRRHILQVWSEPSDLLEIPVS ; _entity_poly.pdbx_seq_one_letter_code_can ;GNLSKATLWAEPGSVISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP AGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPV GPVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIPVS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 LEU n 1 4 SER n 1 5 LYS n 1 6 ALA n 1 7 THR n 1 8 LEU n 1 9 TRP n 1 10 ALA n 1 11 GLU n 1 12 PRO n 1 13 GLY n 1 14 SER n 1 15 VAL n 1 16 ILE n 1 17 SER n 1 18 ARG n 1 19 GLY n 1 20 ASN n 1 21 SER n 1 22 VAL n 1 23 THR n 1 24 ILE n 1 25 ARG n 1 26 CYS n 1 27 GLN n 1 28 GLY n 1 29 THR n 1 30 LEU n 1 31 GLU n 1 32 ALA n 1 33 GLN n 1 34 GLU n 1 35 TYR n 1 36 ARG n 1 37 LEU n 1 38 VAL n 1 39 LYS n 1 40 GLU n 1 41 GLY n 1 42 SER n 1 43 PRO n 1 44 GLU n 1 45 PRO n 1 46 TRP n 1 47 ASP n 1 48 THR n 1 49 GLN n 1 50 ASN n 1 51 PRO n 1 52 LEU n 1 53 GLU n 1 54 PRO n 1 55 LYS n 1 56 ASN n 1 57 LYS n 1 58 ALA n 1 59 ARG n 1 60 PHE n 1 61 SER n 1 62 ILE n 1 63 PRO n 1 64 SER n 1 65 MSE n 1 66 THR n 1 67 GLU n 1 68 HIS n 1 69 HIS n 1 70 ALA n 1 71 GLY n 1 72 ARG n 1 73 TYR n 1 74 ARG n 1 75 CYS n 1 76 TYR n 1 77 TYR n 1 78 TYR n 1 79 SER n 1 80 PRO n 1 81 ALA n 1 82 GLY n 1 83 TRP n 1 84 SER n 1 85 GLU n 1 86 PRO n 1 87 SER n 1 88 ASP n 1 89 PRO n 1 90 LEU n 1 91 GLU n 1 92 LEU n 1 93 VAL n 1 94 VAL n 1 95 THR n 1 96 GLY n 1 97 PHE n 1 98 TYR n 1 99 ASN n 1 100 LYS n 1 101 PRO n 1 102 THR n 1 103 LEU n 1 104 SER n 1 105 ALA n 1 106 LEU n 1 107 PRO n 1 108 SER n 1 109 PRO n 1 110 VAL n 1 111 VAL n 1 112 THR n 1 113 SER n 1 114 GLY n 1 115 GLU n 1 116 ASN n 1 117 VAL n 1 118 THR n 1 119 LEU n 1 120 GLN n 1 121 CYS n 1 122 GLY n 1 123 SER n 1 124 ARG n 1 125 LEU n 1 126 ARG n 1 127 PHE n 1 128 ASP n 1 129 ARG n 1 130 PHE n 1 131 ILE n 1 132 LEU n 1 133 THR n 1 134 GLU n 1 135 GLU n 1 136 GLY n 1 137 ASP n 1 138 HIS n 1 139 LYS n 1 140 LEU n 1 141 SER n 1 142 TRP n 1 143 THR n 1 144 LEU n 1 145 ASP n 1 146 SER n 1 147 GLN n 1 148 LEU n 1 149 THR n 1 150 PRO n 1 151 SER n 1 152 GLY n 1 153 GLN n 1 154 PHE n 1 155 GLN n 1 156 ALA n 1 157 LEU n 1 158 PHE n 1 159 PRO n 1 160 VAL n 1 161 GLY n 1 162 PRO n 1 163 VAL n 1 164 THR n 1 165 PRO n 1 166 SER n 1 167 HIS n 1 168 ARG n 1 169 TRP n 1 170 MSE n 1 171 LEU n 1 172 ARG n 1 173 CYS n 1 174 TYR n 1 175 GLY n 1 176 SER n 1 177 ARG n 1 178 ARG n 1 179 HIS n 1 180 ILE n 1 181 LEU n 1 182 GLN n 1 183 VAL n 1 184 TRP n 1 185 SER n 1 186 GLU n 1 187 PRO n 1 188 SER n 1 189 ASP n 1 190 LEU n 1 191 LEU n 1 192 GLU n 1 193 ILE n 1 194 PRO n 1 195 VAL n 1 196 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGMT7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NP_067073 _struct_ref.pdbx_db_accession 32490553 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GNLSKATLWAEPGSVISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP AGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPV GPVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIPVS ; _struct_ref.pdbx_align_begin 42 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D3V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 196 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 32490553 _struct_ref_seq.db_align_beg 42 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 237 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 196 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D3V MSE A 65 ? GB 32490553 MET 106 'MODIFIED RESIDUE' 65 1 1 2D3V MSE A 170 ? GB 32490553 MET 211 'MODIFIED RESIDUE' 170 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2D3V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 49.6 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_details 'Bicine, PEG20000, Dioxane, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97921 1.0 2 0.97956 1.0 3 0.90000 1.0 4 1.0000 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97921, 0.97956, 0.90000, 1.0000' # _reflns.entry_id 2D3V _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.8 _reflns.number_obs 19328 _reflns.number_all ? _reflns.percent_possible_obs 92.1 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 49.2 _reflns_shell.Rmerge_I_obs 0.382 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1011 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2D3V _refine.ls_number_reflns_obs 17645 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.0 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 95.62 _refine.ls_R_factor_obs 0.23547 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23363 _refine.ls_R_factor_R_free 0.26861 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 951 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.908 _refine.B_iso_mean 34.844 _refine.aniso_B[1][1] -1.17 _refine.aniso_B[2][2] 0.40 _refine.aniso_B[3][3] 0.76 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. The structure was refined also with CNS. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.163 _refine.pdbx_overall_ESU_R_Free 0.152 _refine.overall_SU_ML 0.104 _refine.overall_SU_B 3.364 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1436 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 105 _refine_hist.number_atoms_total 1541 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 1481 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.551 1.961 ? 2018 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.272 5.000 ? 176 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.144 22.576 ? 66 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.481 15.000 ? 238 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.864 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.102 0.200 ? 215 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1139 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.200 0.200 ? 563 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.307 0.200 ? 962 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.170 0.200 ? 96 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.169 0.200 ? 37 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.167 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.046 1.500 ? 922 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.701 2.000 ? 1460 'X-RAY DIFFRACTION' ? r_scbond_it 2.307 3.000 ? 652 'X-RAY DIFFRACTION' ? r_scangle_it 3.493 4.500 ? 558 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.848 _refine_ls_shell.d_res_low 1.896 _refine_ls_shell.number_reflns_R_work 910 _refine_ls_shell.R_factor_R_work 0.297 _refine_ls_shell.percent_reflns_obs 67.04 _refine_ls_shell.R_factor_R_free 0.442 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.number_reflns_obs 952 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2D3V _struct.title 'Crystal Structure of Leukocyte Ig-like Receptor A5 (LILRA5/LIR9/ILT11)' _struct.pdbx_descriptor 'leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D3V _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'Immunoglobulin-like fold, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 66 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 70 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 66 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 70 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 75 SG ? ? A CYS 26 A CYS 75 1_555 ? ? ? ? ? ? ? 2.055 ? disulf2 disulf ? ? A CYS 121 SG ? ? ? 1_555 A CYS 173 SG ? ? A CYS 121 A CYS 173 1_555 ? ? ? ? ? ? ? 2.049 ? covale1 covale ? ? A SER 64 C ? ? ? 1_555 A MSE 65 N ? ? A SER 64 A MSE 65 1_555 ? ? ? ? ? ? ? 1.322 ? covale2 covale ? ? A MSE 65 C ? ? ? 1_555 A THR 66 N ? ? A MSE 65 A THR 66 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A TRP 169 C ? ? ? 1_555 A MSE 170 N ? ? A TRP 169 A MSE 170 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A MSE 170 C ? ? ? 1_555 A LEU 171 N ? ? A MSE 170 A LEU 171 1_555 ? ? ? ? ? ? ? 1.331 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 11 A . ? GLU 11 A PRO 12 A ? PRO 12 A 1 9.47 2 ILE 193 A . ? ILE 193 A PRO 194 A ? PRO 194 A 1 19.08 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 4 ? D ? 4 ? E ? 4 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 7 ? GLU A 11 ? THR A 7 GLU A 11 A 2 VAL A 22 ? GLN A 27 ? VAL A 22 GLN A 27 A 3 LYS A 57 ? ILE A 62 ? LYS A 57 ILE A 62 B 1 VAL A 15 ? SER A 17 ? VAL A 15 SER A 17 B 2 LEU A 90 ? THR A 95 ? LEU A 90 THR A 95 B 3 GLY A 71 ? SER A 79 ? GLY A 71 SER A 79 B 4 GLU A 34 ? LYS A 39 ? GLU A 34 LYS A 39 B 5 ASP A 47 ? GLN A 49 ? ASP A 47 GLN A 49 C 1 VAL A 15 ? SER A 17 ? VAL A 15 SER A 17 C 2 LEU A 90 ? THR A 95 ? LEU A 90 THR A 95 C 3 GLY A 71 ? SER A 79 ? GLY A 71 SER A 79 C 4 GLY A 82 ? TRP A 83 ? GLY A 82 TRP A 83 D 1 THR A 102 ? SER A 104 ? THR A 102 SER A 104 D 2 THR A 118 ? SER A 123 ? THR A 118 SER A 123 D 3 PHE A 154 ? PRO A 159 ? PHE A 154 PRO A 159 D 4 GLN A 147 ? LEU A 148 ? GLN A 147 LEU A 148 E 1 SER A 141 ? ASP A 145 ? SER A 141 ASP A 145 E 2 ARG A 129 ? GLU A 134 ? ARG A 129 GLU A 134 E 3 TRP A 169 ? ARG A 177 ? TRP A 169 ARG A 177 E 4 ILE A 180 ? TRP A 184 ? ILE A 180 TRP A 184 F 1 SER A 141 ? ASP A 145 ? SER A 141 ASP A 145 F 2 ARG A 129 ? GLU A 134 ? ARG A 129 GLU A 134 F 3 TRP A 169 ? ARG A 177 ? TRP A 169 ARG A 177 F 4 LEU A 191 ? ILE A 193 ? LEU A 191 ILE A 193 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 7 ? N THR A 7 O GLN A 27 ? O GLN A 27 A 2 3 N ILE A 24 ? N ILE A 24 O PHE A 60 ? O PHE A 60 B 1 2 N ILE A 16 ? N ILE A 16 O VAL A 93 ? O VAL A 93 B 2 3 O LEU A 92 ? O LEU A 92 N GLY A 71 ? N GLY A 71 B 3 4 O TYR A 76 ? O TYR A 76 N ARG A 36 ? N ARG A 36 B 4 5 N TYR A 35 ? N TYR A 35 O GLN A 49 ? O GLN A 49 C 1 2 N ILE A 16 ? N ILE A 16 O VAL A 93 ? O VAL A 93 C 2 3 O LEU A 92 ? O LEU A 92 N GLY A 71 ? N GLY A 71 C 3 4 N SER A 79 ? N SER A 79 O GLY A 82 ? O GLY A 82 D 1 2 N SER A 104 ? N SER A 104 O GLN A 120 ? O GLN A 120 D 2 3 N SER A 123 ? N SER A 123 O PHE A 154 ? O PHE A 154 D 3 4 O GLN A 155 ? O GLN A 155 N GLN A 147 ? N GLN A 147 E 1 2 O LEU A 144 ? O LEU A 144 N PHE A 130 ? N PHE A 130 E 2 3 N THR A 133 ? N THR A 133 O ARG A 172 ? O ARG A 172 E 3 4 N ARG A 177 ? N ARG A 177 O ILE A 180 ? O ILE A 180 F 1 2 O LEU A 144 ? O LEU A 144 N PHE A 130 ? N PHE A 130 F 2 3 N THR A 133 ? N THR A 133 O ARG A 172 ? O ARG A 172 F 3 4 N LEU A 171 ? N LEU A 171 O LEU A 191 ? O LEU A 191 # _database_PDB_matrix.entry_id 2D3V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D3V _atom_sites.fract_transf_matrix[1][1] 0.035613 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017052 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007598 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 ASN 2 2 ? ? ? A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 TRP 46 46 46 TRP TRP A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 MSE 65 65 65 MSE MSE A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 CYS 75 75 75 CYS CYS A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 TRP 83 83 83 TRP TRP A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 LEU 106 106 ? ? ? A . n A 1 107 PRO 107 107 ? ? ? A . n A 1 108 SER 108 108 ? ? ? A . n A 1 109 PRO 109 109 ? ? ? A . n A 1 110 VAL 110 110 ? ? ? A . n A 1 111 VAL 111 111 ? ? ? A . n A 1 112 THR 112 112 ? ? ? A . n A 1 113 SER 113 113 ? ? ? A . n A 1 114 GLY 114 114 ? ? ? A . n A 1 115 GLU 115 115 ? ? ? A . n A 1 116 ASN 116 116 ? ? ? A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 CYS 121 121 121 CYS CYS A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 ARG 124 124 124 ARG ARG A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 PHE 130 130 130 PHE PHE A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 GLY 136 136 ? ? ? A . n A 1 137 ASP 137 137 ? ? ? A . n A 1 138 HIS 138 138 ? ? ? A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 TRP 142 142 142 TRP TRP A . n A 1 143 THR 143 143 143 THR THR A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 PRO 150 150 150 PRO PRO A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 PHE 154 154 154 PHE PHE A . n A 1 155 GLN 155 155 155 GLN GLN A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 PHE 158 158 158 PHE PHE A . n A 1 159 PRO 159 159 159 PRO PRO A . n A 1 160 VAL 160 160 160 VAL VAL A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 PRO 162 162 162 PRO PRO A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 PRO 165 165 165 PRO PRO A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 HIS 167 167 167 HIS HIS A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 TRP 169 169 169 TRP TRP A . n A 1 170 MSE 170 170 170 MSE MSE A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 ARG 172 172 172 ARG ARG A . n A 1 173 CYS 173 173 173 CYS CYS A . n A 1 174 TYR 174 174 174 TYR TYR A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 SER 176 176 176 SER SER A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 HIS 179 179 179 HIS HIS A . n A 1 180 ILE 180 180 180 ILE ILE A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 GLN 182 182 182 GLN GLN A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 SER 185 185 185 SER SER A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 PRO 187 187 187 PRO PRO A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 ASP 189 189 189 ASP ASP A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 PRO 194 194 194 PRO PRO A . n A 1 195 VAL 195 195 195 VAL VAL A . n A 1 196 SER 196 196 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 197 1 HOH HOH A . B 2 HOH 2 198 2 HOH HOH A . B 2 HOH 3 199 3 HOH HOH A . B 2 HOH 4 200 4 HOH HOH A . B 2 HOH 5 201 5 HOH HOH A . B 2 HOH 6 202 6 HOH HOH A . B 2 HOH 7 203 7 HOH HOH A . B 2 HOH 8 204 8 HOH HOH A . B 2 HOH 9 205 9 HOH HOH A . B 2 HOH 10 206 10 HOH HOH A . B 2 HOH 11 207 11 HOH HOH A . B 2 HOH 12 208 12 HOH HOH A . B 2 HOH 13 209 13 HOH HOH A . B 2 HOH 14 210 14 HOH HOH A . B 2 HOH 15 211 15 HOH HOH A . B 2 HOH 16 212 16 HOH HOH A . B 2 HOH 17 213 17 HOH HOH A . B 2 HOH 18 214 18 HOH HOH A . B 2 HOH 19 215 19 HOH HOH A . B 2 HOH 20 216 20 HOH HOH A . B 2 HOH 21 217 21 HOH HOH A . B 2 HOH 22 218 22 HOH HOH A . B 2 HOH 23 219 23 HOH HOH A . B 2 HOH 24 220 24 HOH HOH A . B 2 HOH 25 221 25 HOH HOH A . B 2 HOH 26 222 26 HOH HOH A . B 2 HOH 27 223 27 HOH HOH A . B 2 HOH 28 224 28 HOH HOH A . B 2 HOH 29 225 29 HOH HOH A . B 2 HOH 30 226 30 HOH HOH A . B 2 HOH 31 227 31 HOH HOH A . B 2 HOH 32 228 32 HOH HOH A . B 2 HOH 33 229 33 HOH HOH A . B 2 HOH 34 230 34 HOH HOH A . B 2 HOH 35 231 35 HOH HOH A . B 2 HOH 36 232 36 HOH HOH A . B 2 HOH 37 233 37 HOH HOH A . B 2 HOH 38 234 38 HOH HOH A . B 2 HOH 39 235 39 HOH HOH A . B 2 HOH 40 236 40 HOH HOH A . B 2 HOH 41 237 41 HOH HOH A . B 2 HOH 42 238 42 HOH HOH A . B 2 HOH 43 239 43 HOH HOH A . B 2 HOH 44 240 44 HOH HOH A . B 2 HOH 45 241 45 HOH HOH A . B 2 HOH 46 242 46 HOH HOH A . B 2 HOH 47 243 47 HOH HOH A . B 2 HOH 48 244 48 HOH HOH A . B 2 HOH 49 245 49 HOH HOH A . B 2 HOH 50 246 50 HOH HOH A . B 2 HOH 51 247 51 HOH HOH A . B 2 HOH 52 248 52 HOH HOH A . B 2 HOH 53 249 53 HOH HOH A . B 2 HOH 54 250 54 HOH HOH A . B 2 HOH 55 251 55 HOH HOH A . B 2 HOH 56 252 56 HOH HOH A . B 2 HOH 57 253 57 HOH HOH A . B 2 HOH 58 254 58 HOH HOH A . B 2 HOH 59 255 59 HOH HOH A . B 2 HOH 60 256 60 HOH HOH A . B 2 HOH 61 257 61 HOH HOH A . B 2 HOH 62 258 62 HOH HOH A . B 2 HOH 63 259 63 HOH HOH A . B 2 HOH 64 260 64 HOH HOH A . B 2 HOH 65 261 65 HOH HOH A . B 2 HOH 66 262 66 HOH HOH A . B 2 HOH 67 263 67 HOH HOH A . B 2 HOH 68 264 68 HOH HOH A . B 2 HOH 69 265 69 HOH HOH A . B 2 HOH 70 266 70 HOH HOH A . B 2 HOH 71 267 71 HOH HOH A . B 2 HOH 72 268 72 HOH HOH A . B 2 HOH 73 269 73 HOH HOH A . B 2 HOH 74 270 74 HOH HOH A . B 2 HOH 75 271 75 HOH HOH A . B 2 HOH 76 272 76 HOH HOH A . B 2 HOH 77 273 77 HOH HOH A . B 2 HOH 78 274 78 HOH HOH A . B 2 HOH 79 275 79 HOH HOH A . B 2 HOH 80 276 80 HOH HOH A . B 2 HOH 81 277 81 HOH HOH A . B 2 HOH 82 278 82 HOH HOH A . B 2 HOH 83 279 83 HOH HOH A . B 2 HOH 84 280 84 HOH HOH A . B 2 HOH 85 281 85 HOH HOH A . B 2 HOH 86 282 86 HOH HOH A . B 2 HOH 87 283 87 HOH HOH A . B 2 HOH 88 284 88 HOH HOH A . B 2 HOH 89 285 89 HOH HOH A . B 2 HOH 90 286 90 HOH HOH A . B 2 HOH 91 287 91 HOH HOH A . B 2 HOH 92 288 92 HOH HOH A . B 2 HOH 93 289 93 HOH HOH A . B 2 HOH 94 290 94 HOH HOH A . B 2 HOH 95 291 95 HOH HOH A . B 2 HOH 96 292 96 HOH HOH A . B 2 HOH 97 293 97 HOH HOH A . B 2 HOH 98 294 98 HOH HOH A . B 2 HOH 99 295 99 HOH HOH A . B 2 HOH 100 296 100 HOH HOH A . B 2 HOH 101 297 101 HOH HOH A . B 2 HOH 102 298 102 HOH HOH A . B 2 HOH 103 299 103 HOH HOH A . B 2 HOH 104 300 104 HOH HOH A . B 2 HOH 105 301 105 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 65 A MSE 65 ? MET SELENOMETHIONINE 2 A MSE 170 A MSE 170 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-06 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SOLVE phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 220 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 300 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.93 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 53 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 51.28 _pdbx_validate_torsion.psi -121.35 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A ASN 2 ? A ASN 2 3 1 Y 1 A LEU 106 ? A LEU 106 4 1 Y 1 A PRO 107 ? A PRO 107 5 1 Y 1 A SER 108 ? A SER 108 6 1 Y 1 A PRO 109 ? A PRO 109 7 1 Y 1 A VAL 110 ? A VAL 110 8 1 Y 1 A VAL 111 ? A VAL 111 9 1 Y 1 A THR 112 ? A THR 112 10 1 Y 1 A SER 113 ? A SER 113 11 1 Y 1 A GLY 114 ? A GLY 114 12 1 Y 1 A GLU 115 ? A GLU 115 13 1 Y 1 A ASN 116 ? A ASN 116 14 1 Y 1 A GLY 136 ? A GLY 136 15 1 Y 1 A ASP 137 ? A ASP 137 16 1 Y 1 A HIS 138 ? A HIS 138 17 1 Y 1 A SER 196 ? A SER 196 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #