HEADER SIGNALING PROTEIN 22-OCT-05 2D4Q TITLE CRYSTAL STRUCTURE OF THE SEC-PH DOMAIN OF THE HUMAN NEUROFIBROMATOSIS TITLE 2 TYPE 1 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROFIBROMIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEC14 HOMOLOGY DOMAIN; COMPND 5 SYNONYM: NEUROFIBROMATOSIS-RELATED PROTEIN NF-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEUROFIBROMIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS CRAL_TRIO, PH, TRITON X-100, BETA HAIRPIN, SEC14, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.D'ANGELO,S.WELTI,F.BONNEAU,K.SCHEFFZEK REVDAT 3 13-MAR-24 2D4Q 1 REMARK REVDAT 2 24-FEB-09 2D4Q 1 VERSN REVDAT 1 07-MAR-06 2D4Q 0 JRNL AUTH I.D'ANGELO,S.WELTI,F.BONNEAU,K.SCHEFFZEK JRNL TITL A NOVEL BIPARTITE PHOSPHOLIPID-BINDING MODULE IN THE JRNL TITL 2 NEUROFIBROMATOSIS TYPE 1 PROTEIN JRNL REF EMBO REP. V. 7 174 2006 JRNL REFN ISSN 1469-221X JRNL PMID 16397625 JRNL DOI 10.1038/SJ.EMBOR.7400602 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.BONNEAU,I.D'ANGELO,S.WELTI,J.YLANNE,G.STIER,K.SCHEFFZEK REMARK 1 TITL EXPRESSION, PURIFICATION AND PRELIMINARY CRYSTALLOGRAPHIC REMARK 1 TITL 2 CHARACTERIZATION OF A NOVEL SEGMENT FROM THE REMARK 1 TITL 3 NEUROFIBROMATOSIS TYPE 1 PROTEIN. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 2364 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15583390 REMARK 1 DOI 10.1107/S0907444904026861 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : REFMAC, CNS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 34716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1722 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 251 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4141 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.00 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.00 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 1.600 REMARK 3 BOND ANGLES (DEGREES) : 0.011 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000024984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL ZERODUR MIRROR, RADII REMARK 200 OF 4.9KM AND 79MM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37204 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA4P2O7, MES, PEG 4000, PH 6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K. NAH2PO, NACL, SODIUM REMARK 280 ACETATE, PH 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.80000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.40000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.20000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.40000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 94.20000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 1680 REMARK 465 GLY B 1681 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B1775 CG CD OE1 OE2 REMARK 470 ARG B1809 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 1560 CB CG CD CE NZ REMARK 480 GLU A 1561 CG CD OE1 OE2 REMARK 480 GLU A 1562 CG CD OE1 OE2 REMARK 480 LYS A 1564 CG CD CE NZ REMARK 480 LEU A 1566 CD1 CD2 REMARK 480 LYS A 1567 CG CD CE NZ REMARK 480 THR A 1568 OG1 CG2 REMARK 480 LEU A 1569 CG CD1 CD2 REMARK 480 ILE A 1597 CG1 CG2 CD1 REMARK 480 LEU A 1601 CG CD1 CD2 REMARK 480 LEU A 1608 CG CD1 CD2 REMARK 480 LYS A 1611 CG CD CE NZ REMARK 480 LYS A 1640 CE NZ REMARK 480 VAL A 1643 CG1 CG2 REMARK 480 VAL A 1644 CG1 CG2 REMARK 480 GLU A 1673 CG CD OE1 OE2 REMARK 480 LYS A 1680 CG CD CE NZ REMARK 480 LYS A 1683 CB CG CD CE NZ REMARK 480 LYS A 1693 CE NZ REMARK 480 ILE A 1698 CG1 CG2 CD1 REMARK 480 HIS A 1700 CA CB CG ND1 CD2 CE1 NE2 REMARK 480 GLU A 1701 N CG CD OE1 OE2 REMARK 480 LYS A 1728 CG CD CE NZ REMARK 480 LYS A 1731 CG CD CE NZ REMARK 480 GLU A 1769 CG CD OE1 OE2 REMARK 480 LYS B 1560 CG CD CE NZ REMARK 480 GLU B 1561 CB CG CD OE1 OE2 REMARK 480 GLU B 1562 CB CG CD OE1 OE2 REMARK 480 PHE B 1563 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS B 1564 CG CD CE NZ REMARK 480 LYS B 1567 CG CD CE NZ REMARK 480 LYS B 1616 CE NZ REMARK 480 LYS B 1640 CE NZ REMARK 480 PHE B 1642 CE2 CZ REMARK 480 VAL B 1643 CB CG1 CG2 REMARK 480 LYS B 1683 CB CG CD CE NZ REMARK 480 ARG B 1684 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 1693 CG CD CE NZ REMARK 480 GLU B 1696 CG CD OE1 OE2 REMARK 480 GLU B 1714 CG CD OE1 OE2 REMARK 480 LYS B 1717 CG CD CE NZ REMARK 480 LYS B 1728 CG CD CE NZ REMARK 480 LYS B 1731 CG CD CE NZ REMARK 480 GLU B 1775 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 1751 O HOH B 88 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 1667 OE2 GLU B 1667 3455 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A1720 N - CA - C ANGL. DEV. = 20.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1575 114.67 -170.26 REMARK 500 GLN A1596 -15.59 -177.17 REMARK 500 ASN A1598 109.68 -49.81 REMARK 500 TYR A1614 5.16 -66.50 REMARK 500 GLU A1699 114.81 -35.41 REMARK 500 HIS A1700 47.76 33.18 REMARK 500 GLU A1701 61.30 61.95 REMARK 500 GLN A1702 58.82 -119.98 REMARK 500 ALA A1726 -164.44 -172.76 REMARK 500 VAL A1773 -72.77 -84.10 REMARK 500 HIS A1793 146.05 -177.87 REMARK 500 GLU B1561 -78.29 -65.94 REMARK 500 ALA B1575 121.14 -171.41 REMARK 500 THR B1594 -55.77 -27.36 REMARK 500 LYS B1683 29.73 -68.47 REMARK 500 LYS B1704 55.81 -143.21 REMARK 500 ALA B1726 -167.82 -167.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OXN A 701 REMARK 610 OXN B 702 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXN B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 602 DBREF 2D4Q A 1560 1816 UNP P21359 NF1_HUMAN 1581 1837 DBREF 2D4Q B 1560 1816 UNP P21359 NF1_HUMAN 1581 1837 SEQRES 1 A 257 LYS GLU GLU PHE LYS ALA LEU LYS THR LEU SER ILE PHE SEQRES 2 A 257 TYR GLN ALA GLY THR SER LYS ALA GLY ASN PRO ILE PHE SEQRES 3 A 257 TYR TYR VAL ALA ARG ARG PHE LYS THR GLY GLN ILE ASN SEQRES 4 A 257 GLY ASP LEU LEU ILE TYR HIS VAL LEU LEU THR LEU LYS SEQRES 5 A 257 PRO TYR TYR ALA LYS PRO TYR GLU ILE VAL VAL ASP LEU SEQRES 6 A 257 THR HIS THR GLY PRO SER ASN ARG PHE LYS THR ASP PHE SEQRES 7 A 257 LEU SER LYS TRP PHE VAL VAL PHE PRO GLY PHE ALA TYR SEQRES 8 A 257 ASP ASN VAL SER ALA VAL TYR ILE TYR ASN CYS ASN SER SEQRES 9 A 257 TRP VAL ARG GLU TYR THR LYS TYR HIS GLU ARG LEU LEU SEQRES 10 A 257 THR GLY LEU LYS GLY SER LYS ARG LEU VAL PHE ILE ASP SEQRES 11 A 257 CYS PRO GLY LYS LEU ALA GLU HIS ILE GLU HIS GLU GLN SEQRES 12 A 257 GLN LYS LEU PRO ALA ALA THR LEU ALA LEU GLU GLU ASP SEQRES 13 A 257 LEU LYS VAL PHE HIS ASN ALA LEU LYS LEU ALA HIS LYS SEQRES 14 A 257 ASP THR LYS VAL SER ILE LYS VAL GLY SER THR ALA VAL SEQRES 15 A 257 GLN VAL THR SER ALA GLU ARG THR LYS VAL LEU GLY GLN SEQRES 16 A 257 SER VAL PHE LEU ASN ASP ILE TYR TYR ALA SER GLU ILE SEQRES 17 A 257 GLU GLU ILE CYS LEU VAL ASP GLU ASN GLN PHE THR LEU SEQRES 18 A 257 THR ILE ALA ASN GLN GLY THR PRO LEU THR PHE MET HIS SEQRES 19 A 257 GLN GLU CYS GLU ALA ILE VAL GLN SER ILE ILE HIS ILE SEQRES 20 A 257 ARG THR ARG TRP GLU LEU SER GLN PRO ASP SEQRES 1 B 257 LYS GLU GLU PHE LYS ALA LEU LYS THR LEU SER ILE PHE SEQRES 2 B 257 TYR GLN ALA GLY THR SER LYS ALA GLY ASN PRO ILE PHE SEQRES 3 B 257 TYR TYR VAL ALA ARG ARG PHE LYS THR GLY GLN ILE ASN SEQRES 4 B 257 GLY ASP LEU LEU ILE TYR HIS VAL LEU LEU THR LEU LYS SEQRES 5 B 257 PRO TYR TYR ALA LYS PRO TYR GLU ILE VAL VAL ASP LEU SEQRES 6 B 257 THR HIS THR GLY PRO SER ASN ARG PHE LYS THR ASP PHE SEQRES 7 B 257 LEU SER LYS TRP PHE VAL VAL PHE PRO GLY PHE ALA TYR SEQRES 8 B 257 ASP ASN VAL SER ALA VAL TYR ILE TYR ASN CYS ASN SER SEQRES 9 B 257 TRP VAL ARG GLU TYR THR LYS TYR HIS GLU ARG LEU LEU SEQRES 10 B 257 THR GLY LEU LYS GLY SER LYS ARG LEU VAL PHE ILE ASP SEQRES 11 B 257 CYS PRO GLY LYS LEU ALA GLU HIS ILE GLU HIS GLU GLN SEQRES 12 B 257 GLN LYS LEU PRO ALA ALA THR LEU ALA LEU GLU GLU ASP SEQRES 13 B 257 LEU LYS VAL PHE HIS ASN ALA LEU LYS LEU ALA HIS LYS SEQRES 14 B 257 ASP THR LYS VAL SER ILE LYS VAL GLY SER THR ALA VAL SEQRES 15 B 257 GLN VAL THR SER ALA GLU ARG THR LYS VAL LEU GLY GLN SEQRES 16 B 257 SER VAL PHE LEU ASN ASP ILE TYR TYR ALA SER GLU ILE SEQRES 17 B 257 GLU GLU ILE CYS LEU VAL ASP GLU ASN GLN PHE THR LEU SEQRES 18 B 257 THR ILE ALA ASN GLN GLY THR PRO LEU THR PHE MET HIS SEQRES 19 B 257 GLN GLU CYS GLU ALA ILE VAL GLN SER ILE ILE HIS ILE SEQRES 20 B 257 ARG THR ARG TRP GLU LEU SER GLN PRO ASP HET OXN A 701 24 HET OXN B 702 24 HET POP B 601 9 HET POP B 602 9 HETNAM OXN OXTOXYNOL-10 HETNAM POP PYROPHOSPHATE 2- HETSYN OXN ALPHA-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENYL]-OMEGA- HETSYN 2 OXN HYDROXYPOLY(OXY-1,2-ETHANEDIYL); TRITON X-100 FORMUL 3 OXN 2(C34 H62 O11) FORMUL 5 POP 2(H2 O7 P2 2-) FORMUL 7 HOH *113(H2 O) HELIX 1 1 PHE A 1563 SER A 1570 1 8 HELIX 2 2 ARG A 1590 PHE A 1592 5 3 HELIX 3 3 ASN A 1598 LYS A 1611 1 14 HELIX 4 4 GLY A 1628 ARG A 1632 5 5 HELIX 5 5 LYS A 1634 TRP A 1641 1 8 HELIX 6 6 PRO A 1646 ASN A 1652 1 7 HELIX 7 7 ASN A 1662 HIS A 1672 1 11 HELIX 8 8 HIS A 1672 THR A 1677 1 6 HELIX 9 9 GLY A 1678 LYS A 1680 5 3 HELIX 10 10 CYS A 1690 GLU A 1696 1 7 HELIX 11 11 HIS A 1697 GLN A 1702 5 6 HELIX 12 12 PRO A 1706 LEU A 1712 1 7 HELIX 13 13 GLU A 1795 LEU A 1812 1 18 HELIX 14 14 LYS B 1560 SER B 1570 1 11 HELIX 15 15 ARG B 1590 PHE B 1592 5 3 HELIX 16 16 ASN B 1598 LYS B 1611 1 14 HELIX 17 17 GLY B 1628 ARG B 1632 5 5 HELIX 18 18 LYS B 1634 PHE B 1645 1 12 HELIX 19 19 PRO B 1646 ASN B 1652 1 7 HELIX 20 20 ASN B 1662 HIS B 1672 1 11 HELIX 21 21 HIS B 1672 THR B 1677 1 6 HELIX 22 22 GLY B 1692 HIS B 1697 5 6 HELIX 23 23 GLU B 1699 GLN B 1703 5 5 HELIX 24 24 PRO B 1706 LEU B 1712 1 7 HELIX 25 25 GLU B 1795 LEU B 1812 1 18 SHEET 1 A 5 PHE A1572 THR A1577 0 SHEET 2 A 5 PRO A1583 VAL A1588 -1 O TYR A1586 N TYR A1573 SHEET 3 A 5 TYR A1618 ASP A1623 1 O VAL A1621 N PHE A1585 SHEET 4 A 5 VAL A1653 TYR A1659 1 O TYR A1657 N VAL A1622 SHEET 5 A 5 LEU A1685 ILE A1688 1 O VAL A1686 N VAL A1656 SHEET 1 B 7 ASN A1759 TYR A1763 0 SHEET 2 B 7 ALA A1740 SER A1745 -1 N VAL A1743 O ASP A1760 SHEET 3 B 7 THR A1730 VAL A1736 -1 N LYS A1735 O GLN A1742 SHEET 4 B 7 LYS A1717 LYS A1724 -1 N PHE A1719 O ILE A1734 SHEET 5 B 7 LEU A1789 MET A1792 -1 O MET A1792 N LEU A1723 SHEET 6 B 7 GLN A1777 ILE A1782 -1 N LEU A1780 O LEU A1789 SHEET 7 B 7 ILE A1767 ASP A1774 -1 N CYS A1771 O THR A1779 SHEET 1 C 2 THR A1749 VAL A1751 0 SHEET 2 C 2 GLN A1754 VAL A1756 -1 O VAL A1756 N THR A1749 SHEET 1 D 5 PHE B1572 THR B1577 0 SHEET 2 D 5 PRO B1583 VAL B1588 -1 O TYR B1586 N TYR B1573 SHEET 3 D 5 TYR B1618 ASP B1623 1 O VAL B1621 N PHE B1585 SHEET 4 D 5 VAL B1653 TYR B1659 1 O TYR B1657 N VAL B1622 SHEET 5 D 5 LEU B1685 ILE B1688 1 O VAL B1686 N VAL B1656 SHEET 1 E 7 ASN B1759 TYR B1763 0 SHEET 2 E 7 ALA B1740 SER B1745 -1 N VAL B1741 O TYR B1762 SHEET 3 E 7 THR B1730 VAL B1736 -1 N LYS B1735 O GLN B1742 SHEET 4 E 7 LYS B1717 LEU B1725 -1 N LYS B1724 O THR B1730 SHEET 5 E 7 LEU B1789 MET B1792 -1 O THR B1790 N LEU B1725 SHEET 6 E 7 GLN B1777 ILE B1782 -1 N PHE B1778 O PHE B1791 SHEET 7 E 7 ILE B1767 ASP B1774 -1 N CYS B1771 O THR B1779 SHEET 1 F 2 THR B1749 LYS B1750 0 SHEET 2 F 2 SER B1755 VAL B1756 -1 O VAL B1756 N THR B1749 SITE 1 AC1 5 ILE A1620 PHE A1633 TRP A1641 PHE A1645 SITE 2 AC1 5 TYR A1668 SITE 1 AC2 4 TYR B1587 VAL B1622 PHE B1633 TYR B1668 SITE 1 AC3 4 ARG A1666 LYS A1670 ARG B1666 LYS B1670 SITE 1 AC4 10 ARG A1632 LYS A1634 THR A1635 TYR A1671 SITE 2 AC4 10 HIS A1672 ARG B1632 LYS B1634 THR B1635 SITE 3 AC4 10 TYR B1671 HIS B1672 CRYST1 113.500 113.500 125.600 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007962 0.00000