data_2D9P # _entry.id 2D9P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D9P pdb_00002d9p 10.2210/pdb2d9p/pdb RCSB RCSB025160 ? ? WWPDB D_1000025160 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002012034.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D9P _pdbx_database_status.recvd_initial_deposition_date 2005-12-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsuda, K.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title ;Solution structure of RNA binding domain 4 in Polyadenylation binding protein 3 ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuda, K.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Polyadenylate-binding protein 3' _entity.formula_weight 11141.521 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PolyA, -binding protein 3, PABP 3, Testis-specific polyA, -binding protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV ATKPLYVALAQRKEERQSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV ATKPLYVALAQRKEERQSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002012034.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ASP n 1 9 ARG n 1 10 ILE n 1 11 THR n 1 12 ARG n 1 13 TYR n 1 14 GLN n 1 15 VAL n 1 16 VAL n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 VAL n 1 21 LYS n 1 22 ASN n 1 23 LEU n 1 24 ASP n 1 25 ASP n 1 26 GLY n 1 27 ILE n 1 28 ASP n 1 29 ASP n 1 30 GLU n 1 31 ARG n 1 32 LEU n 1 33 ARG n 1 34 LYS n 1 35 ALA n 1 36 PHE n 1 37 SER n 1 38 PRO n 1 39 PHE n 1 40 GLY n 1 41 THR n 1 42 ILE n 1 43 THR n 1 44 SER n 1 45 ALA n 1 46 LYS n 1 47 VAL n 1 48 MET n 1 49 MET n 1 50 GLU n 1 51 GLY n 1 52 GLY n 1 53 ARG n 1 54 SER n 1 55 LYS n 1 56 GLY n 1 57 PHE n 1 58 GLY n 1 59 PHE n 1 60 VAL n 1 61 CYS n 1 62 PHE n 1 63 SER n 1 64 SER n 1 65 PRO n 1 66 GLU n 1 67 GLU n 1 68 ALA n 1 69 THR n 1 70 LYS n 1 71 ALA n 1 72 VAL n 1 73 THR n 1 74 GLU n 1 75 MET n 1 76 ASN n 1 77 GLY n 1 78 ARG n 1 79 ILE n 1 80 VAL n 1 81 ALA n 1 82 THR n 1 83 LYS n 1 84 PRO n 1 85 LEU n 1 86 TYR n 1 87 VAL n 1 88 ALA n 1 89 LEU n 1 90 ALA n 1 91 GLN n 1 92 ARG n 1 93 LYS n 1 94 GLU n 1 95 GLU n 1 96 ARG n 1 97 GLN n 1 98 SER n 1 99 GLY n 1 100 PRO n 1 101 SER n 1 102 SER n 1 103 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene PABP3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050516-01 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PABP3_HUMAN _struct_ref.pdbx_db_accession Q9H361 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV ALAQRKEERQ ; _struct_ref.pdbx_align_begin 286 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D9P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9H361 _struct_ref_seq.db_align_beg 286 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 375 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 286 _struct_ref_seq.pdbx_auth_seq_align_end 375 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D9P GLY A 1 ? UNP Q9H361 ? ? 'cloning artifact' 279 1 1 2D9P SER A 2 ? UNP Q9H361 ? ? 'cloning artifact' 280 2 1 2D9P SER A 3 ? UNP Q9H361 ? ? 'cloning artifact' 281 3 1 2D9P GLY A 4 ? UNP Q9H361 ? ? 'cloning artifact' 282 4 1 2D9P SER A 5 ? UNP Q9H361 ? ? 'cloning artifact' 283 5 1 2D9P SER A 6 ? UNP Q9H361 ? ? 'cloning artifact' 284 6 1 2D9P GLY A 7 ? UNP Q9H361 ? ? 'cloning artifact' 285 7 1 2D9P SER A 98 ? UNP Q9H361 ? ? 'cloning artifact' 376 8 1 2D9P GLY A 99 ? UNP Q9H361 ? ? 'cloning artifact' 377 9 1 2D9P PRO A 100 ? UNP Q9H361 ? ? 'cloning artifact' 378 10 1 2D9P SER A 101 ? UNP Q9H361 ? ? 'cloning artifact' 379 11 1 2D9P SER A 102 ? UNP Q9H361 ? ? 'cloning artifact' 380 12 1 2D9P GLY A 103 ? UNP Q9H361 ? ? 'cloning artifact' 381 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH 7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2D9P _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2D9P _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D9P _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9321 'Kobayashi, N.' 4 'structure solution' CYANA 2.0 'Guntert, P.' 5 refinement CYANA 2.0 'Guntert, P.' 6 # _exptl.entry_id 2D9P _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D9P _struct.title 'Solution structure of RNA binding domain 4 in Polyadenylation binding protein 3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D9P _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA binding protein ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 28 ? ALA A 35 ? ASP A 306 ALA A 313 1 ? 8 HELX_P HELX_P2 2 SER A 64 ? ASN A 76 ? SER A 342 ASN A 354 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 42 ? MET A 49 ? ILE A 320 MET A 327 A 2 SER A 54 ? PHE A 62 ? SER A 332 PHE A 340 A 3 LEU A 18 ? LYS A 21 ? LEU A 296 LYS A 299 A 4 TYR A 86 ? LEU A 89 ? TYR A 364 LEU A 367 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 46 ? N LYS A 324 O PHE A 59 ? O PHE A 337 A 2 3 O VAL A 60 ? O VAL A 338 N LEU A 18 ? N LEU A 296 A 3 4 N TYR A 19 ? N TYR A 297 O ALA A 88 ? O ALA A 366 # _database_PDB_matrix.entry_id 2D9P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D9P _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 279 279 GLY GLY A . n A 1 2 SER 2 280 280 SER SER A . n A 1 3 SER 3 281 281 SER SER A . n A 1 4 GLY 4 282 282 GLY GLY A . n A 1 5 SER 5 283 283 SER SER A . n A 1 6 SER 6 284 284 SER SER A . n A 1 7 GLY 7 285 285 GLY GLY A . n A 1 8 ASP 8 286 286 ASP ASP A . n A 1 9 ARG 9 287 287 ARG ARG A . n A 1 10 ILE 10 288 288 ILE ILE A . n A 1 11 THR 11 289 289 THR THR A . n A 1 12 ARG 12 290 290 ARG ARG A . n A 1 13 TYR 13 291 291 TYR TYR A . n A 1 14 GLN 14 292 292 GLN GLN A . n A 1 15 VAL 15 293 293 VAL VAL A . n A 1 16 VAL 16 294 294 VAL VAL A . n A 1 17 ASN 17 295 295 ASN ASN A . n A 1 18 LEU 18 296 296 LEU LEU A . n A 1 19 TYR 19 297 297 TYR TYR A . n A 1 20 VAL 20 298 298 VAL VAL A . n A 1 21 LYS 21 299 299 LYS LYS A . n A 1 22 ASN 22 300 300 ASN ASN A . n A 1 23 LEU 23 301 301 LEU LEU A . n A 1 24 ASP 24 302 302 ASP ASP A . n A 1 25 ASP 25 303 303 ASP ASP A . n A 1 26 GLY 26 304 304 GLY GLY A . n A 1 27 ILE 27 305 305 ILE ILE A . n A 1 28 ASP 28 306 306 ASP ASP A . n A 1 29 ASP 29 307 307 ASP ASP A . n A 1 30 GLU 30 308 308 GLU GLU A . n A 1 31 ARG 31 309 309 ARG ARG A . n A 1 32 LEU 32 310 310 LEU LEU A . n A 1 33 ARG 33 311 311 ARG ARG A . n A 1 34 LYS 34 312 312 LYS LYS A . n A 1 35 ALA 35 313 313 ALA ALA A . n A 1 36 PHE 36 314 314 PHE PHE A . n A 1 37 SER 37 315 315 SER SER A . n A 1 38 PRO 38 316 316 PRO PRO A . n A 1 39 PHE 39 317 317 PHE PHE A . n A 1 40 GLY 40 318 318 GLY GLY A . n A 1 41 THR 41 319 319 THR THR A . n A 1 42 ILE 42 320 320 ILE ILE A . n A 1 43 THR 43 321 321 THR THR A . n A 1 44 SER 44 322 322 SER SER A . n A 1 45 ALA 45 323 323 ALA ALA A . n A 1 46 LYS 46 324 324 LYS LYS A . n A 1 47 VAL 47 325 325 VAL VAL A . n A 1 48 MET 48 326 326 MET MET A . n A 1 49 MET 49 327 327 MET MET A . n A 1 50 GLU 50 328 328 GLU GLU A . n A 1 51 GLY 51 329 329 GLY GLY A . n A 1 52 GLY 52 330 330 GLY GLY A . n A 1 53 ARG 53 331 331 ARG ARG A . n A 1 54 SER 54 332 332 SER SER A . n A 1 55 LYS 55 333 333 LYS LYS A . n A 1 56 GLY 56 334 334 GLY GLY A . n A 1 57 PHE 57 335 335 PHE PHE A . n A 1 58 GLY 58 336 336 GLY GLY A . n A 1 59 PHE 59 337 337 PHE PHE A . n A 1 60 VAL 60 338 338 VAL VAL A . n A 1 61 CYS 61 339 339 CYS CYS A . n A 1 62 PHE 62 340 340 PHE PHE A . n A 1 63 SER 63 341 341 SER SER A . n A 1 64 SER 64 342 342 SER SER A . n A 1 65 PRO 65 343 343 PRO PRO A . n A 1 66 GLU 66 344 344 GLU GLU A . n A 1 67 GLU 67 345 345 GLU GLU A . n A 1 68 ALA 68 346 346 ALA ALA A . n A 1 69 THR 69 347 347 THR THR A . n A 1 70 LYS 70 348 348 LYS LYS A . n A 1 71 ALA 71 349 349 ALA ALA A . n A 1 72 VAL 72 350 350 VAL VAL A . n A 1 73 THR 73 351 351 THR THR A . n A 1 74 GLU 74 352 352 GLU GLU A . n A 1 75 MET 75 353 353 MET MET A . n A 1 76 ASN 76 354 354 ASN ASN A . n A 1 77 GLY 77 355 355 GLY GLY A . n A 1 78 ARG 78 356 356 ARG ARG A . n A 1 79 ILE 79 357 357 ILE ILE A . n A 1 80 VAL 80 358 358 VAL VAL A . n A 1 81 ALA 81 359 359 ALA ALA A . n A 1 82 THR 82 360 360 THR THR A . n A 1 83 LYS 83 361 361 LYS LYS A . n A 1 84 PRO 84 362 362 PRO PRO A . n A 1 85 LEU 85 363 363 LEU LEU A . n A 1 86 TYR 86 364 364 TYR TYR A . n A 1 87 VAL 87 365 365 VAL VAL A . n A 1 88 ALA 88 366 366 ALA ALA A . n A 1 89 LEU 89 367 367 LEU LEU A . n A 1 90 ALA 90 368 368 ALA ALA A . n A 1 91 GLN 91 369 369 GLN GLN A . n A 1 92 ARG 92 370 370 ARG ARG A . n A 1 93 LYS 93 371 371 LYS LYS A . n A 1 94 GLU 94 372 372 GLU GLU A . n A 1 95 GLU 95 373 373 GLU GLU A . n A 1 96 ARG 96 374 374 ARG ARG A . n A 1 97 GLN 97 375 375 GLN GLN A . n A 1 98 SER 98 376 376 SER SER A . n A 1 99 GLY 99 377 377 GLY GLY A . n A 1 100 PRO 100 378 378 PRO PRO A . n A 1 101 SER 101 379 379 SER SER A . n A 1 102 SER 102 380 380 SER SER A . n A 1 103 GLY 103 381 381 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-12 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 287 ? ? 35.49 38.15 2 1 GLN A 292 ? ? -59.83 95.71 3 1 PRO A 316 ? ? -47.97 -17.34 4 1 GLU A 328 ? ? -94.67 34.31 5 1 PHE A 335 ? ? -171.32 147.54 6 1 GLU A 352 ? ? -49.94 -19.19 7 1 ASN A 354 ? ? -36.30 111.01 8 1 ALA A 359 ? ? -116.43 -73.09 9 1 THR A 360 ? ? -132.98 -47.62 10 1 TYR A 364 ? ? -68.43 96.82 11 1 SER A 379 ? ? -60.95 91.44 12 2 ASN A 300 ? ? 74.50 37.87 13 2 LEU A 310 ? ? -67.61 -71.12 14 2 PRO A 316 ? ? -48.02 -17.04 15 2 MET A 326 ? ? -68.39 95.58 16 2 GLU A 352 ? ? -39.99 -27.90 17 2 VAL A 358 ? ? -131.95 -40.90 18 2 ALA A 359 ? ? -130.21 -66.82 19 2 THR A 360 ? ? -133.00 -54.52 20 2 LYS A 371 ? ? -161.86 116.70 21 2 PRO A 378 ? ? -45.60 150.37 22 3 ARG A 309 ? ? -35.19 -36.49 23 3 LEU A 310 ? ? -68.05 -75.12 24 3 PHE A 314 ? ? -130.22 -30.41 25 3 PRO A 316 ? ? -47.95 -17.59 26 3 ASN A 354 ? ? -34.25 111.96 27 3 THR A 360 ? ? -131.60 -53.23 28 3 LYS A 371 ? ? -170.25 105.04 29 4 ASP A 302 ? ? -44.79 157.93 30 4 LEU A 310 ? ? -55.42 -74.50 31 4 PRO A 316 ? ? -48.03 -17.88 32 4 PHE A 317 ? ? -100.45 -61.09 33 4 ASN A 354 ? ? -34.02 115.95 34 4 ALA A 359 ? ? -118.55 -72.83 35 4 THR A 360 ? ? -132.14 -51.74 36 4 GLN A 369 ? ? -101.06 78.72 37 4 LYS A 371 ? ? -106.73 -70.84 38 5 SER A 280 ? ? 35.61 44.01 39 5 LEU A 310 ? ? -57.28 -70.53 40 5 PRO A 316 ? ? -47.92 -17.10 41 5 ASN A 354 ? ? -34.89 110.18 42 5 ALA A 359 ? ? -125.11 -70.63 43 5 THR A 360 ? ? -132.03 -52.91 44 5 ALA A 368 ? ? -105.18 -61.41 45 5 GLU A 373 ? ? -44.99 153.59 46 5 PRO A 378 ? ? -46.17 156.48 47 6 SER A 283 ? ? -173.06 147.26 48 6 LEU A 310 ? ? -60.22 -70.29 49 6 PRO A 316 ? ? -48.07 -17.02 50 6 GLU A 328 ? ? -113.37 64.50 51 6 ASN A 354 ? ? -33.96 118.66 52 6 ALA A 359 ? ? -131.27 -69.76 53 6 THR A 360 ? ? -133.68 -51.20 54 6 TYR A 364 ? ? -65.23 97.69 55 7 ILE A 288 ? ? -49.47 100.26 56 7 ASN A 300 ? ? 74.78 39.15 57 7 LEU A 310 ? ? -55.37 -75.08 58 7 PRO A 316 ? ? -48.03 -16.73 59 7 ASN A 354 ? ? -46.10 109.07 60 7 ALA A 359 ? ? -123.00 -74.36 61 8 GLU A 308 ? ? -68.63 -72.23 62 8 ARG A 309 ? ? -36.99 -38.89 63 8 LEU A 310 ? ? -63.32 -70.72 64 8 PRO A 316 ? ? -47.94 -17.05 65 8 GLU A 328 ? ? -96.18 38.79 66 8 ASN A 354 ? ? -34.22 116.23 67 8 ALA A 359 ? ? -120.75 -68.24 68 8 THR A 360 ? ? -130.88 -54.44 69 8 ARG A 374 ? ? -174.93 127.82 70 8 PRO A 378 ? ? -77.99 38.81 71 9 ASP A 302 ? ? -46.35 163.68 72 9 LEU A 310 ? ? -62.38 -71.95 73 9 PRO A 316 ? ? -47.95 -17.06 74 9 GLU A 344 ? ? -39.01 -37.92 75 9 GLU A 352 ? ? -37.44 -29.76 76 9 MET A 353 ? ? -100.24 -61.30 77 9 ASN A 354 ? ? -36.80 101.07 78 9 THR A 360 ? ? -133.76 -52.65 79 9 TYR A 364 ? ? -68.08 88.28 80 9 LYS A 371 ? ? -170.49 131.77 81 9 SER A 376 ? ? -130.92 -56.79 82 10 GLU A 308 ? ? -62.25 -70.25 83 10 LEU A 310 ? ? -60.72 -70.92 84 10 PRO A 316 ? ? -48.00 -17.16 85 10 ASN A 354 ? ? -36.10 110.53 86 10 ALA A 359 ? ? -126.10 -69.23 87 10 THR A 360 ? ? -130.11 -55.25 88 11 GLN A 292 ? ? -62.29 95.77 89 11 LEU A 310 ? ? -50.22 -74.28 90 11 PRO A 316 ? ? -48.00 -17.13 91 11 ASN A 354 ? ? -40.72 105.92 92 11 ALA A 359 ? ? -105.72 -70.44 93 11 THR A 360 ? ? -133.64 -47.41 94 11 PRO A 378 ? ? -45.60 101.89 95 12 LEU A 310 ? ? -67.74 -75.27 96 12 PRO A 316 ? ? -47.89 -17.21 97 12 GLU A 328 ? ? -98.55 -62.01 98 12 GLU A 344 ? ? -35.75 -70.04 99 12 ASN A 354 ? ? -59.22 109.54 100 12 VAL A 358 ? ? -131.97 -54.01 101 12 ALA A 359 ? ? -113.01 -72.72 102 12 THR A 360 ? ? -131.86 -49.08 103 12 LYS A 371 ? ? -172.74 144.40 104 12 GLU A 372 ? ? -166.16 109.14 105 12 ARG A 374 ? ? -174.55 144.77 106 13 GLN A 292 ? ? -48.26 96.81 107 13 LEU A 310 ? ? -61.89 -72.55 108 13 PRO A 316 ? ? -48.03 -16.67 109 13 THR A 347 ? ? -52.04 -74.50 110 13 ASN A 354 ? ? -58.98 97.44 111 13 ALA A 359 ? ? -120.28 -68.97 112 13 THR A 360 ? ? -134.32 -51.25 113 14 LEU A 310 ? ? -53.91 -74.83 114 14 PHE A 314 ? ? -133.72 -32.85 115 14 PRO A 316 ? ? -47.95 -17.17 116 14 GLU A 328 ? ? -107.24 43.41 117 14 ASN A 354 ? ? -39.49 103.98 118 14 ALA A 359 ? ? -126.26 -65.18 119 14 THR A 360 ? ? -134.52 -53.89 120 14 TYR A 364 ? ? -61.38 99.73 121 14 LYS A 371 ? ? -38.46 141.28 122 15 ASP A 302 ? ? -37.52 155.98 123 15 LEU A 310 ? ? -57.36 -71.93 124 15 PRO A 316 ? ? -47.94 -16.69 125 15 VAL A 358 ? ? -132.52 -48.01 126 15 ALA A 359 ? ? -125.80 -68.59 127 15 THR A 360 ? ? -130.79 -53.14 128 16 ASP A 302 ? ? -36.05 132.09 129 16 LEU A 310 ? ? -56.65 -73.77 130 16 PRO A 316 ? ? -47.97 -16.57 131 16 GLU A 352 ? ? -49.08 -18.84 132 16 ASN A 354 ? ? -59.10 96.01 133 16 VAL A 358 ? ? -132.26 -39.46 134 16 ALA A 359 ? ? -133.22 -71.36 135 16 THR A 360 ? ? -128.96 -55.05 136 17 TYR A 291 ? ? -174.85 140.55 137 17 ASP A 302 ? ? -45.92 162.05 138 17 LEU A 310 ? ? -52.23 -75.45 139 17 PRO A 316 ? ? -47.98 -16.63 140 17 MET A 326 ? ? -68.86 86.40 141 17 MET A 353 ? ? -102.19 -62.03 142 17 ASN A 354 ? ? -40.66 107.22 143 17 VAL A 358 ? ? -132.23 -41.06 144 17 ALA A 359 ? ? -126.64 -71.91 145 17 THR A 360 ? ? -131.63 -50.16 146 17 TYR A 364 ? ? -66.34 94.56 147 17 LYS A 371 ? ? -174.07 140.91 148 18 THR A 289 ? ? -92.45 44.49 149 18 LEU A 310 ? ? -53.96 -75.75 150 18 PRO A 316 ? ? -47.92 -16.89 151 18 GLU A 328 ? ? -93.14 -66.43 152 18 ARG A 331 ? ? -168.34 115.00 153 18 SER A 332 ? ? -54.95 104.87 154 18 ALA A 359 ? ? -109.01 -67.85 155 18 THR A 360 ? ? -134.87 -49.06 156 18 ARG A 370 ? ? -172.00 132.28 157 19 ASP A 302 ? ? -46.12 158.03 158 19 PRO A 316 ? ? -48.04 -15.51 159 19 ASN A 354 ? ? -58.14 96.43 160 19 ALA A 359 ? ? -100.79 -75.24 161 19 TYR A 364 ? ? -67.80 81.61 162 19 ARG A 370 ? ? -34.61 102.29 163 19 SER A 376 ? ? -122.49 -60.55 164 19 SER A 379 ? ? -167.00 117.37 165 20 ASP A 286 ? ? -35.30 150.24 166 20 TYR A 291 ? ? 35.43 35.03 167 20 GLN A 292 ? ? 36.31 46.17 168 20 VAL A 293 ? ? -66.61 93.06 169 20 PRO A 316 ? ? -47.99 -17.25 170 20 GLU A 328 ? ? -124.33 -51.47 171 20 ASN A 354 ? ? -35.77 112.38 172 20 VAL A 358 ? ? -131.84 -38.81 173 20 ALA A 359 ? ? -125.65 -72.68 174 20 THR A 360 ? ? -131.71 -52.22 175 20 TYR A 364 ? ? -64.52 97.38 176 20 GLN A 369 ? ? 32.43 47.89 177 20 ARG A 374 ? ? -127.51 -59.11 #